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ONTOLOGY REPORT - ANNOTATIONS


Term:tetrapyrrole metabolic process
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Accession:GO:0033013 term browser browse the term
Definition:The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
Synonyms:exact_synonym: tetrapyrrole metabolism



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tetrapyrrole metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISO
ISS
(PMID:23792964)
GO_REF:0000024
RGD
UniProt
PMID:23792964 GO_REF:0000024 NCBI chr 9:76,668,554...76,677,263
Ensembl chr 9:76,668,554...76,676,924
JBrowse link
bilirubin conjugation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 TAS RGD PMID:11829457 RGD:70480 NCBI chr 9:88,801,344...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
cobalamin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cubn cubilin IMP RGD PMID:14576052 RGD:8554807 NCBI chr17:76,385,046...76,593,133
Ensembl chr17:76,385,060...76,593,231
JBrowse link
cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd4 ATP binding cassette subfamily D member 4 involved_in ISO (PMID:22922874), (PMID:33845046) RGD PMID:22922874 PMID:33845046 NCBI chr 6:104,246,459...104,260,965
Ensembl chr 6:104,246,468...104,280,276
JBrowse link
G Amn amnion associated transmembrane protein involved_in ISO (PMID:14576052) RGD PMID:14576052 NCBI chr 6:130,311,372...130,318,815
Ensembl chr 6:130,311,372...130,318,815
JBrowse link
G Cubn cubilin involved_in IEA
ISO
GO_REF:0000107
(PMID:14576052)
Ensembl
RGD
PMID:14576052 GO_REF:0000107 NCBI chr17:76,385,046...76,593,133
Ensembl chr17:76,385,060...76,593,231
JBrowse link
G Mmaa metabolism of cobalamin associated A involved_in ISO (PMID:31056463) RGD PMID:31056463 NCBI chr19:28,619,060...28,649,319
Ensembl chr19:28,619,087...28,649,319
JBrowse link
G Mmab metabolism of cobalamin associated B involved_in ISO (PMID:12514191) RGD PMID:12514191 NCBI chr12:42,159,109...42,172,518
Ensembl chr12:42,159,089...42,172,490
JBrowse link
G Mmachc metabolism of cobalamin associated C involved_in ISO
IBA
(PMID:19700356), (PMID:22642810), (PMID:23825108)
GO_REF:0000033
RGD
GO_Central
PMID:19700356 PMID:22642810 PMID:23825108 GO_REF:0000033 NCBI chr 5:130,166,056...130,172,735
Ensembl chr 5:130,166,451...130,172,601
JBrowse link
G Mmadhc metabolism of cobalamin associated D involved_in IEA
ISO
ISS
GO_REF:0000002
GO_REF:0000107
(PMID:22156578), (PMID:24722857)
GO_REF:0000024
InterPro
Ensembl
RGD
UniProt
PMID:22156578 PMID:24722857 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:34,708,649...34,726,554
Ensembl chr 3:34,708,649...34,726,771
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IEA
ISO
GO_REF:0000107
MGI:2180496 (PMID:11158293)
(PMID:23825108)
Ensembl
RGD
PMID:11158293 PMID:23825108 GO_REF:0000107 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISO (PMID:17369066) RGD PMID:17369066 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425
JBrowse link
heme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in ISO (PMID:14050799), (PMID:5393940) RGD PMID:5393940 PMID:14050799 NCBI chr 5:75,961,993...75,972,334
Ensembl chr 5:75,961,993...75,972,474
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA
ISO
GO_REF:0000107
MGI:4440831 (PMID:33307066)
Ensembl
RGD
PMID:33307066 GO_REF:0000107 NCBI chr 8:106,876,514...106,889,917
Ensembl chr 8:106,876,514...106,889,917
JBrowse link
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:12928484)
GO_REF:0000033
UniProtKB:Q12887 (PMID:12928484)
(PMID:16103131), (PMID:16782876)
RGD
GO_Central
PMID:12928484 PMID:16103131 PMID:16782876 GO_REF:0000033 NCBI chr10:48,630,993...48,742,805
Ensembl chr10:48,630,676...48,746,667
JBrowse link
G Cox15 cytochrome c oxidase assembly homolog COX15 involved_in ISO
IBA
UniProtKB:Q7KZN9-1 (PMID:12474143)
GO_REF:0000033
RGD
GO_Central
PMID:12474143 GO_REF:0000033 NCBI chr 1:242,605,588...242,622,279
Ensembl chr 1:242,605,588...242,622,261
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IEA
ISO
GO_REF:0000107
(PMID:8407975)
Ensembl
RGD
PMID:8407975 GO_REF:0000107 NCBI chr11:41,936,585...41,946,568
Ensembl chr11:41,936,591...41,946,746
JBrowse link
G Fech ferrochelatase involved_in ISO MGI:1858114 (PMID:15677551) RGD PMID:15677551 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA
ISO
GO_REF:0000107
MGI:2182340 (PMID:8563760)
Ensembl
RGD
PMID:8563760 GO_REF:0000107 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in ISO (PMID:3346226) RGD PMID:3346226 NCBI chr13:83,697,661...83,701,998
Ensembl chr13:83,664,891...83,701,805
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA
ISO
GO_REF:0000107
MGI:2687172 (PMID:17360334)
Ensembl
RGD
PMID:17360334 GO_REF:0000107 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
G Uros uroporphyrinogen III synthase involved_in ISO MGI:3776884 (PMID:16532394) RGD PMID:16532394 NCBI chr 1:188,490,832...188,513,659
Ensembl chr 1:188,490,323...188,512,249
JBrowse link
heme B biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 NOT|involved_in ISO (PMID:22655043) RGD PMID:22655043 NCBI chr 9:76,668,554...76,677,263
Ensembl chr 9:76,668,554...76,676,924
JBrowse link
G Alad aminolevulinate dehydratase involved_in ISO (PMID:14050799), (PMID:5393940) RGD PMID:5393940 PMID:14050799 NCBI chr 5:75,961,993...75,972,334
Ensembl chr 5:75,961,993...75,972,474
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA
ISO
GO_REF:0000107
MGI:4440831 (PMID:33307066)
Ensembl
RGD
PMID:33307066 GO_REF:0000107 NCBI chr 8:106,876,514...106,889,917
Ensembl chr 8:106,876,514...106,889,917
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IEA
ISO
GO_REF:0000107
(PMID:8407975)
Ensembl
RGD
PMID:8407975 GO_REF:0000107 NCBI chr11:41,936,585...41,946,568
Ensembl chr11:41,936,591...41,946,746
JBrowse link
G Fech ferrochelatase involved_in ISO MGI:1858114 (PMID:15677551) RGD PMID:15677551 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA
ISO
GO_REF:0000107
MGI:2182340 (PMID:8563760)
Ensembl
RGD
PMID:8563760 GO_REF:0000107 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in ISO (PMID:3346226) RGD PMID:3346226 NCBI chr13:83,697,661...83,701,998
Ensembl chr13:83,664,891...83,701,805
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA
ISO
GO_REF:0000107
MGI:2687172 (PMID:17360334)
Ensembl
RGD
PMID:17360334 GO_REF:0000107 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
G Uros uroporphyrinogen III synthase involved_in ISO MGI:3776884 (PMID:16532394) RGD PMID:16532394 NCBI chr 1:188,490,832...188,513,659
Ensembl chr 1:188,490,323...188,512,249
JBrowse link
heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb10 ATP binding cassette subfamily B member 10 involved_in ISO (MGI:5648801|PMID:24421385) RGD PMID:24421385 MGI:5648801 NCBI chr19:51,952,655...51,982,910
Ensembl chr19:51,952,681...51,982,753
JBrowse link
G Alad aminolevulinate dehydratase acts_upstream_of_or_within
involved_in
IDA
ISO
ISS
IBA
(PMID:14050799), (PMID:4959158), (PMID:4981581)
GO_REF:0000024
(PMID:11032836)
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:4959158 PMID:4981581 PMID:11032836 PMID:14050799 PMID:1764448 GO_REF:0000024 GO_REF:0000033, RGD:1599020 NCBI chr 5:75,961,993...75,972,334
Ensembl chr 5:75,961,993...75,972,474
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:106,876,514...106,889,917
Ensembl chr 8:106,876,514...106,889,917
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 involved_in ISO
IBA
ISS
(MGI:3694153|PMID:9446639)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:9446639 GO_REF:0000024 GO_REF:0000033 MGI:3694153 NCBI chr  X:19,463,146...19,486,526
Ensembl chr  X:19,463,171...19,486,519
JBrowse link
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO
IBA
ISS
(PMID:23135403)
GO_REF:0000033
(MGI:5447588|PMID:23135403)
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:23135403 GO_REF:0000024 GO_REF:0000033 MGI:5447588 NCBI chr 5:144,738,950...144,742,668
Ensembl chr 5:144,738,950...144,742,668
JBrowse link
G Cpox coproporphyrinogen oxidase acts_upstream_of_or_within IDA
ISO
(PMID:8407975) RGD PMID:8407975 PMID:3955059 RGD:1600961 NCBI chr11:41,936,585...41,946,568
Ensembl chr11:41,936,591...41,946,746
JBrowse link
G Fech ferrochelatase acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
MGI:1858114|MGI:2384729 (PMID:15496139), (PMID:16306232), (PMID:16503645), (PMID:8611576), (PMID:9989256)
GO_REF:0000033
(PMID:27599036)
RGD
GO_Central
PMID:8611576 PMID:9989256 PMID:15496139 PMID:16306232 PMID:16503645 More... GO_REF:0000033, RGD:1600961 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
G Fxn frataxin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:221,874,007...221,897,543
Ensembl chr 1:221,872,420...221,897,540
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in ISO
IBA
(PMID:18936296)
GO_REF:0000033
RGD
GO_Central
PMID:18936296 GO_REF:0000033 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO MGI:2384429 (PMID:10617683) RGD PMID:10617683 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
JBrowse link
G Pgrmc1 progesterone receptor membrane component 1 involved_in ISO
ISS
(PMID:27599036)
GO_REF:0000024
RGD
UniProt
PMID:27599036 GO_REF:0000024 NCBI chr  X:115,832,865...115,841,060
Ensembl chr  X:115,832,884...115,888,682
JBrowse link
G Ppox protoporphyrinogen oxidase acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
(PMID:3346226)
GO_REF:0000033
(PMID:7713909)
RGD
GO_Central
PMID:3346226 PMID:7713909 PMID:3955059 GO_REF:0000033, RGD:1600961 NCBI chr13:83,697,661...83,701,998
Ensembl chr13:83,664,891...83,701,805
JBrowse link
G Slc11a2 solute carrier family 11 member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856400 (PMID:11739192)
Ensembl
RGD
PMID:11739192 GO_REF:0000107 NCBI chr 7:131,503,076...131,540,246
Ensembl chr 7:131,503,081...131,540,145
JBrowse link
G Slc25a39 solute carrier family 25, member 39 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:87,362,494...87,367,358
Ensembl chr10:87,362,490...87,367,260
JBrowse link
G Tmem14c transmembrane protein 14C involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:23,733,769...23,739,906
Ensembl chr17:23,733,894...23,753,320
JBrowse link
G Tmem14cl1 transmembrane protein 14C like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:100,656,576...100,657,086
Ensembl chr13:100,656,593...100,657,445
JBrowse link
G Urod uroporphyrinogen decarboxylase acts_upstream_of_or_within
involved_in
NAS
ISO
IBA
IC
MGI:2687172 (PMID:17360334)
GO_REF:0000033
RGD
GO_Central
PMID:17360334 PMID:3658690 PMID:15736160 GO_REF:0000033, RGD:70052, RGD:2301379 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
G Uros uroporphyrinogen III synthase involved_in ISO (PMID:3805019) RGD PMID:3805019 NCBI chr 1:188,490,832...188,513,659
Ensembl chr 1:188,490,323...188,512,249
JBrowse link
heme catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blvra biliverdin reductase A involved_in ISO
IEA
(PMID:10858451)
GO_REF:0000104
RGD
UniProt
PMID:10858451 GO_REF:0000104 NCBI chr 3:114,340,778...114,366,048
Ensembl chr 3:114,340,838...114,366,033
JBrowse link
G Blvrb biliverdin reductase B involved_in ISO (PMID:10858451), (PMID:7929092) RGD PMID:7929092 PMID:10858451 NCBI chr 1:82,738,646...82,756,312
Ensembl chr 1:82,738,695...82,770,375
JBrowse link
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of_or_within
IDA
IBA
ISO
IEA
GO_REF:0000033
MGI:1914989 (PMID:31571584)
GO_REF:0000107
(PMID:17915953)
GO_Central
RGD
Ensembl
PMID:17915953 PMID:31571584 PMID:15226268 GO_REF:0000033 GO_REF:0000107, RGD:1547877 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Hmox2 heme oxygenase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:10,797,076...10,831,178
Ensembl chr10:10,797,055...10,831,148
JBrowse link
G Hmox2-ps1 heme oxygenase (decycling) 2, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:200,299,951...200,302,161 JBrowse link
heme metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISO
ISS
(PMID:33007128)
GO_REF:0000024
RGD
UniProt
PMID:33007128 GO_REF:0000024 NCBI chr 9:76,668,554...76,677,263
Ensembl chr 9:76,668,554...76,676,924
JBrowse link
G Bdh2 3-hydroxybutyrate dehydrogenase 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:223,702,410...223,723,076
Ensembl chr 2:223,702,412...223,723,072
JBrowse link
G Fech ferrochelatase TAS RGD PMID:9113083 RGD:1598930 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO (PMID:16183037) RGD PMID:16183037 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Hpx hemopexin involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2447193 (PMID:18556779)
GO_Central
RGD
PMID:18556779 GO_REF:0000033 NCBI chr 1:159,932,819...159,940,327
Ensembl chr 1:159,932,755...159,940,328
JBrowse link
G Slc48a1 solute carrier family 48 member 1 involved_in IEA
ISO
GO_REF:0000107
MGI:6711492 (PMID:31571584)
Ensembl
RGD
PMID:31571584 GO_REF:0000107 NCBI chr 7:128,915,136...128,923,929
Ensembl chr 7:128,915,195...128,923,024
JBrowse link
G Urod uroporphyrinogen decarboxylase acts_upstream_of_or_within ISO MGI:2687172 (PMID:11134514) RGD PMID:11134514 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
heme O biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in ISO (PMID:14050799), (PMID:5393940) RGD PMID:5393940 PMID:14050799 NCBI chr 5:75,961,993...75,972,334
Ensembl chr 5:75,961,993...75,972,474
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA
ISO
GO_REF:0000107
MGI:4440831 (PMID:33307066)
Ensembl
RGD
PMID:33307066 GO_REF:0000107 NCBI chr 8:106,876,514...106,889,917
Ensembl chr 8:106,876,514...106,889,917
JBrowse link
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 involved_in ISO UniProtKB:Q12887 (PMID:12928484) RGD PMID:12928484 NCBI chr10:48,630,993...48,742,805
Ensembl chr10:48,630,676...48,746,667
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IEA
ISO
GO_REF:0000107
(PMID:8407975)
Ensembl
RGD
PMID:8407975 GO_REF:0000107 NCBI chr11:41,936,585...41,946,568
Ensembl chr11:41,936,591...41,946,746
JBrowse link
G Fech ferrochelatase involved_in ISO MGI:1858114 (PMID:15677551) RGD PMID:15677551 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA
ISO
GO_REF:0000107
MGI:2182340 (PMID:8563760)
Ensembl
RGD
PMID:8563760 GO_REF:0000107 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in ISO (PMID:3346226) RGD PMID:3346226 NCBI chr13:83,697,661...83,701,998
Ensembl chr13:83,664,891...83,701,805
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA
ISO
GO_REF:0000107
MGI:2687172 (PMID:17360334)
Ensembl
RGD
PMID:17360334 GO_REF:0000107 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
G Uros uroporphyrinogen III synthase involved_in ISO MGI:3776884 (PMID:16532394) RGD PMID:16532394 NCBI chr 1:188,490,832...188,513,659
Ensembl chr 1:188,490,323...188,512,249
JBrowse link
heme oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 involved_in ISO
IBA
IEA
(PMID:17915953)
GO_REF:0000033
GO_REF:0000104
RGD
GO_Central
UniProt
PMID:17915953 GO_REF:0000033 GO_REF:0000104 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Hmox2 heme oxygenase 2 involved_in TAS
IBA
IEA
GO_REF:0000033
GO_REF:0000002
GO_Central
InterPro
RGD
PMID:12114211 GO_REF:0000002 GO_REF:0000033, RGD:625638 NCBI chr10:10,797,076...10,831,178
Ensembl chr10:10,797,055...10,831,148
JBrowse link
G Hmox2-ps1 heme oxygenase (decycling) 2, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:200,299,951...200,302,161 JBrowse link
porphyrin-containing compound biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISO (PMID:17006453) RGD PMID:17006453 NCBI chr 9:76,668,554...76,677,263
Ensembl chr 9:76,668,554...76,676,924
JBrowse link
G Ank1 ankyrin 1 acts_upstream_of_or_within ISO MGI:1856298 (PMID:658175) RGD PMID:658175 NCBI chr16:68,876,294...69,054,963
Ensembl chr16:68,877,504...69,054,759
JBrowse link
G Fech ferrochelatase acts_upstream_of_or_within ISO MGI:2384729 (PMID:12149233) RGD PMID:12149233 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
G Hmbs hydroxymethylbilane synthase IDA uroporphyrin I
Urophorphyrin I
Uroporphyrinogen
Uroporphyrin I
RGD PMID:11786116 PMID:3963818 PMID:3702597 PMID:994723 PMID:6694518 More... RGD:26923962, RGD:4144803, RGD:4144820, RGD:25440497, RGD:25330343, RGD:25440495, RGD:25394584, RGD:25394583, RGD:26923963, RGD:2301707, RGD:4144783 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IDA
ISO
(PMID:7713909) RGD PMID:7713909 PMID:3663105 RGD:1599180 NCBI chr13:83,697,661...83,701,998
Ensembl chr13:83,664,891...83,701,805
JBrowse link
G Rsad1 radical S-adenosyl methionine domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:79,485,253...79,499,616
Ensembl chr10:79,489,909...79,499,573
JBrowse link
G Slc11a2 solute carrier family 11 member 2 acts_upstream_of_or_within ISO MGI:1856400 (PMID:658175) RGD PMID:658175 NCBI chr 7:131,503,076...131,540,246
Ensembl chr 7:131,503,081...131,540,145
JBrowse link
G Spta1 spectrin, alpha, erythrocytic 1 acts_upstream_of_or_within ISO MGI:1856181|MGI:1856377 (PMID:658175) RGD PMID:658175 NCBI chr13:86,203,504...86,279,371
Ensembl chr13:86,203,504...86,279,371
JBrowse link
G Sptb spectrin, beta, erythrocytic acts_upstream_of_or_within ISO MGI:1856378 (PMID:658175) RGD PMID:658175 NCBI chr 6:95,310,342...95,437,221
Ensembl chr 6:95,310,326...95,437,118
JBrowse link
G Urod uroporphyrinogen decarboxylase IDA RGD PMID:12381387 RGD:4144825 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
G Uros uroporphyrinogen III synthase acts_upstream_of_or_within ISO MGI:3620007 (PMID:7607680) RGD PMID:7607680 MGI:3620006 NCBI chr 1:188,490,832...188,513,659
Ensembl chr 1:188,490,323...188,512,249
JBrowse link
porphyrin-containing compound catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Urod uroporphyrinogen decarboxylase involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:11069625), (PMID:11719352), (PMID:14633982), (PMID:21668429)
UniProt
Ensembl
RGD
PMID:11069625 PMID:11719352 PMID:14633982 PMID:21668429 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
porphyrin-containing compound metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:5898211|PMID:27507172)
(PMID:27507172), (PMID:33007128)
UniProt
RGD
PMID:27507172 PMID:33007128 GO_REF:0000024 MGI:5898211 NCBI chr 9:76,668,554...76,677,263
Ensembl chr 9:76,668,554...76,676,924
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IDA Uroporphyrinogen oxidation, generating hydrogen peroxide RGD PMID:12907239 RGD:2306674 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2182351 (PMID:11274970), (PMID:9461503)
Ensembl
RGD
PMID:9461503 PMID:11274970 GO_REF:0000107 NCBI chr 8:58,075,367...58,082,255
Ensembl chr 8:58,075,367...58,082,312
JBrowse link
G Hmbs hydroxymethylbilane synthase IDA Porphobilinogen
Uroporphyrinogen
RGD PMID:11786116 PMID:3963818 PMID:3702597 PMID:593266 PMID:994723 More... RGD:26923962, RGD:4144803, RGD:4144820, RGD:26884337, RGD:25440497, RGD:25440495, RGD:25394584, RGD:25394583, RGD:26923963, RGD:2301707, RGD:4144783 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Slc11a2 solute carrier family 11 member 2 acts_upstream_of_or_within ISO MGI:1856400 (PMID:4404581) RGD PMID:4404581 NCBI chr 7:131,503,076...131,540,246
Ensembl chr 7:131,503,081...131,540,145
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in ISO (PMID:12071824) RGD PMID:12071824 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
positive regulation of cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clybl citramalyl-CoA lyase involved_in ISO
IEA
(MGI:5926841|PMID:29056341)
GO_REF:0000107
RGD
Ensembl
PMID:29056341 GO_REF:0000107 MGI:5926841 NCBI chr15:99,283,644...99,505,697
Ensembl chr15:99,283,650...99,505,695
JBrowse link
positive regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb7 ATP binding cassette subfamily B member 7 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:30765471)
(MGI:6695684|PMID:30765471)
UniProt
Ensembl
RGD
PMID:30765471 GO_REF:0000024 GO_REF:0000107 MGI:6695684 NCBI chr  X:69,295,598...69,436,775
Ensembl chr  X:69,295,552...69,436,858
JBrowse link
G Slc6a9 solute carrier family 6 member 9 involved_in ISO (MGI:6450351|PMID:28495915) RGD PMID:28495915 MGI:6450351 NCBI chr 5:131,374,562...131,408,733
Ensembl chr 5:131,374,542...131,408,728
JBrowse link
protoporphyrinogen IX biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:75,961,993...75,972,334
Ensembl chr 5:75,961,993...75,972,474
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:106,876,514...106,889,917
Ensembl chr 8:106,876,514...106,889,917
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr  X:19,463,146...19,486,526
Ensembl chr  X:19,463,171...19,486,519
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000041
GO_Central
UniProt
RGD
PMID:3814086 GO_REF:0000033 GO_REF:0000041, RGD:4145128 NCBI chr11:41,936,585...41,946,568
Ensembl chr11:41,936,591...41,946,746
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Ireb2 iron responsive element binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2181660 (PMID:15831703)
Ensembl
RGD
PMID:15831703 GO_REF:0000107 NCBI chr 8:55,228,080...55,311,613
Ensembl chr 8:55,228,085...55,311,611
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr13:83,697,661...83,701,998
Ensembl chr13:83,664,891...83,701,805
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:188,490,832...188,513,659
Ensembl chr 1:188,490,323...188,512,249
JBrowse link
protoporphyrinogen IX metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1353448|MGI:95513 (PMID:15931390)
Ensembl
RGD
PMID:15931390 GO_REF:0000107 NCBI chr12:10,710,771...10,744,597
Ensembl chr12:10,705,874...10,744,573
JBrowse link
G Fech ferrochelatase involved_in
acts_upstream_of_or_within
ISO (PMID:15123683)
MGI:1353448|MGI:95513 (PMID:15931390)
RGD PMID:15123683 PMID:15931390 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
G Ppox protoporphyrinogen oxidase IDA RGD PMID:3663105 RGD:1599180 NCBI chr13:83,697,661...83,701,998
Ensembl chr13:83,664,891...83,701,805
JBrowse link
regulation of cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clybl citramalyl-CoA lyase involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:29056341)
(MGI:5926841|PMID:29056341)
UniProt
GO_Central
RGD
PMID:29056341 GO_REF:0000024 GO_REF:0000033 MGI:5926841 NCBI chr15:99,283,644...99,505,697
Ensembl chr15:99,283,650...99,505,695
JBrowse link
regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srrd SRR1 domain containing involved_in ISO (MGI:6282940|PMID:28802827) RGD PMID:28802827 MGI:6282940 NCBI chr12:44,294,675...44,300,287
Ensembl chr12:44,294,271...44,300,287
JBrowse link
G Tmem14a transmembrane protein 14A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:23,640,594...23,652,379
Ensembl chr 9:23,733,039...23,734,463
Ensembl chr 9:23,733,039...23,734,463
JBrowse link
G Tmem14c transmembrane protein 14C involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:4351741 (PMID:25157825)
GO_Central
RGD
PMID:25157825 GO_REF:0000033 NCBI chr17:23,733,769...23,739,906
Ensembl chr17:23,733,894...23,753,320
JBrowse link
G Tmem14cl1 transmembrane protein 14C like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:100,656,576...100,657,086
Ensembl chr13:100,656,593...100,657,445
JBrowse link
tetrapyrrole biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmbs hydroxymethylbilane synthase IDA
IMP
RGD PMID:9344466 PMID:18760440 PMID:6712591 PMID:12127573 RGD:2301695, RGD:2301858, RGD:2301704, RGD:2301691 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
uroporphyrinogen III biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uros uroporphyrinogen III synthase involved_in IDA
IBA
ISO
GO_REF:0000033
(PMID:18004775), (PMID:3174619), (PMID:3805019)
GO_Central
RGD
PMID:3174619 PMID:3805019 PMID:18004775 PMID:17763925 GO_REF:0000033, RGD:4144811 NCBI chr 1:188,490,832...188,513,659
Ensembl chr 1:188,490,323...188,512,249
JBrowse link
uroporphyrinogen III metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Urod uroporphyrinogen decarboxylase IDA converts uroporphyrinogen to coproporphyrinogen via hepta-, hexa- and penta-carboxyporphyrinogen RGD PMID:15736160 RGD:2301379 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11455
      organonitrogen compound metabolic process 5663
        tetrapyrrole metabolic process 52
          cobalamin metabolic process + 10
          corrin metabolic process + 0
          negative regulation of tetrapyrrole metabolic process + 0
          nickel-tetrapyrrole coenzyme metabolic process + 0
          phytochromobilin metabolic process + 0
          porphyrin-containing compound metabolic process + 42
          positive regulation of tetrapyrrole metabolic process + 3
          regulation of tetrapyrrole metabolic process + 7
          tetrapyrrole biosynthetic process + 30
          tetrapyrrole catabolic process + 8
paths to the root