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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-DNA complex
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Accession:GO:0032993 term browser browse the term
Definition:A macromolecular complex containing both protein and DNA molecules.
Comment:Note that this term is intended to classify complexes that have DNA as one of the members of the complex, that is, the complex does not exist if DNA is not present. Protein complexes that interact with DNA e.g. transcription factor complexes should not be classified here.


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protein-DNA complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf6b activating transcription factor 6 beta part_of ISO (PMID:11256944) RGD PMID:11256944 NCBI chr20:4,090,921...4,098,920
Ensembl chr20:4,090,921...4,098,894
JBrowse link
G Cdc5l cell division cycle 5-like IDA RGD PMID:11694351 RGD:10047049 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 part_of ISO (MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:5317044 NCBI chr 4:157,898,503...157,931,632
Ensembl chr 4:157,899,391...157,931,541
JBrowse link
G Ctnnb1 catenin beta 1 part_of ISO
IEA
ISS
(PMID:10825188)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:10825188 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 part_of ISO
IEA
(PMID:15322075)
GO_REF:0000107
RGD
Ensembl
PMID:15322075 GO_REF:0000107 NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201
JBrowse link
G Ep300 E1A binding protein p300 part_of IDA
IPI
PMID:10362258 RGD
ARUK-UCL
PMID:19765194 PMID:10362258 RGD:2316171, RGD:13506263 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Esr2 estrogen receptor 2 IDA RGD PMID:10342845 RGD:8694156 NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 part_of ISO (MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:3768605 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit part_of ISO (PMID:10704222) RGD PMID:10704222 NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036
JBrowse link
G Gata1 GATA binding protein 1 part_of ISO (PMID:12609092) RGD PMID:12609092 NCBI chr  X:14,529,706...14,537,530
Ensembl chr  X:14,529,702...14,537,530
JBrowse link
G Gtf2b general transcription factor IIB part_of ISS
ISO
GO_REF:0000024
(PMID:10619841), (PMID:29158257), (PMID:8413225), (PMID:8515820), (PMID:8516312)
UniProt
RGD
PMID:8413225 PMID:8515820 PMID:8516312 PMID:10619841 PMID:29158257 GO_REF:0000024 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
JBrowse link
G Hhex hematopoietically expressed homeobox part_of ISO (PMID:18755198) RGD PMID:18755198 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Hmga2 high mobility group AT-hook 2 part_of ISO
ISS
(PMID:19465398)
GO_REF:0000024
RGD
UniProt
PMID:19465398 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IDA RGD PMID:9553145 RGD:2303817 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
JBrowse link
G Hoxa11 homeobox A11 part_of ISO (MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:3768605 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 part_of ISO (MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:5317044 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Jund JunD proto-oncogene, AP-1 transcription factor subunit part_of IDA PMID:10523647 ParkinsonsUK-UCL PMID:10523647 RGD:10047214 NCBI chr16:18,734,121...18,735,799
Ensembl chr16:18,734,122...18,735,799
JBrowse link
G Jup junction plakoglobin part_of ISO (PMID:14661054) RGD PMID:14661054 NCBI chr10:85,300,438...85,327,378
Ensembl chr10:85,300,440...85,327,057
JBrowse link
G Kcnip3 potassium voltage-gated channel interacting protein 3 part_of IDA
ISO
(MGI:5882899|PMID:15746104) RGD PMID:15746104 PMID:18191896 MGI:5882899, RGD:7207199 NCBI chr 3:114,677,027...114,742,923
Ensembl chr 3:114,677,030...114,743,556
JBrowse link
G Kdm5a lysine demethylase 5A part_of ISO (MGI:3789777|PMID:18483221) RGD PMID:18483221 MGI:3789777 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 part_of ISO
IEA
(PMID:10825188)
GO_REF:0000107
RGD
Ensembl
PMID:10825188 GO_REF:0000107 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Max MYC associated factor X part_of ISO (PMID:16171389), (PMID:9399572) RGD PMID:9399572 PMID:16171389 NCBI chr 6:95,636,857...95,662,204
Ensembl chr 6:95,636,858...95,662,137
JBrowse link
G Med1 mediator complex subunit 1 IDA RGD PMID:10037764 RGD:5134969 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Myog myogenin part_of IDA PMID:14751541 UniProt PMID:14751541 RGD:8553747 NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
JBrowse link
G Nfe2 nuclear factor, erythroid 2 part_of ISO (PMID:12609092) RGD PMID:12609092 NCBI chr 7:134,382,758...134,395,364
Ensembl chr 7:134,382,761...134,390,108
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 part_of ISO (MGI:2677605|PMID:14517290) RGD PMID:14517290 MGI:2677605 NCBI chr 3:60,594,239...60,621,785
Ensembl chr 3:60,594,242...60,621,737
JBrowse link
G Nfya nuclear transcription factor Y subunit alpha part_of ISO
IEA
(PMID:11256944)
GO_REF:0000107
RGD
Ensembl
PMID:11256944 GO_REF:0000107 NCBI chr 9:12,587,437...12,613,911
Ensembl chr 9:12,586,259...12,613,898
JBrowse link
G Nfyb nuclear transcription factor Y subunit beta part_of ISO (PMID:11256944) RGD PMID:11256944 NCBI chr 7:20,964,988...20,980,569
Ensembl chr 7:20,964,993...20,980,565
JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma part_of ISO (PMID:11256944) RGD PMID:11256944 NCBI chr 5:134,336,802...134,405,372
Ensembl chr 5:134,336,808...134,405,377
JBrowse link
G Nkx2-5 NK2 homeobox 5 part_of ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22849347)
UniProt
Ensembl
RGD
PMID:22849347 GO_REF:0000024 GO_REF:0000107 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
JBrowse link
G Npm1 nucleophosmin 1 part_of ISO (PMID:19160485) RGD PMID:19160485 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator part_of ISO (PMID:11056169) RGD PMID:11056169 NCBI chr 1:181,213,292...181,215,327 JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 part_of ISO (PMID:22504299) RGD PMID:22504299 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Pax2 paired box 2 part_of ISS
ISO
GO_REF:0000024
(MGI:3768605|PMID:17785448)
UniProt
RGD
PMID:17785448 GO_REF:0000024 MGI:3768605 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Polr2h RNA polymerase II, I and III subunit H part_of ISO (PMID:16632472) RGD PMID:16632472 NCBI chr11:80,192,017...80,197,468
Ensembl chr11:80,192,032...80,197,515
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit part_of ISO (PMID:22504299) RGD PMID:22504299 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein part_of ISO (PMID:12370410) RGD PMID:12370410 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region IDA RGD PMID:10773077 RGD:2306426 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353
JBrowse link
G Sox12 SRY-box transcription factor 12 part_of ISO (MGI:3803393|PMID:18505825) RGD PMID:18505825 MGI:3803393 NCBI chr 3:140,859,499...140,860,518
Ensembl chr 3:140,856,579...140,860,975
JBrowse link
G Sp1 Sp1 transcription factor part_of IDA
IPI
PMID:10362258 RGD
ARUK-UCL
PMID:19765194 PMID:10362258 RGD:2316171, RGD:13506263 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
JBrowse link
G Sp3 Sp3 transcription factor part_of IPI PMID:10362258 ARUK-UCL PMID:10362258 RGD:13506263 NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342
JBrowse link
G St18 ST18 C2H2C-type zinc finger transcription factor part_of ISO
IEA
(PMID:18676404)
GO_REF:0000107
RGD
Ensembl
PMID:18676404 GO_REF:0000107 NCBI chr 5:12,582,493...12,914,221
Ensembl chr 5:12,584,110...12,671,790
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit part_of ISO (MGI:3789777|PMID:18483221) RGD PMID:18483221 MGI:3789777 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738
JBrowse link
G Tbx5 T-box transcription factor 5 part_of ISO
IEA
ISS
(PMID:26926761)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26926761 GO_REF:0000024 GO_REF:0000107 NCBI chr12:36,686,344...36,739,253
Ensembl chr12:36,688,014...36,734,885
JBrowse link
G Tcf7l2 transcription factor 7 like 2 part_of ISO (PMID:14661054) RGD PMID:14661054 NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
JBrowse link
G Tead4 TEA domain transcription factor 4 part_of ISO (MGI:5426342|PMID:22529382) RGD PMID:22529382 MGI:5426342 NCBI chr 4:161,474,122...161,572,837
Ensembl chr 4:161,497,851...161,572,323
JBrowse link
G Top1 DNA topoisomerase I part_of IEA
ISO
GO_REF:0000107
(PMID:10497031)
Ensembl
RGD
PMID:10497031 GO_REF:0000107 NCBI chr 3:149,293,658...149,375,405
Ensembl chr 3:149,293,403...149,376,623
JBrowse link
G Trex1 three prime repair exonuclease 1 part_of ISO (MGI:5637600|PMID:25848017) RGD PMID:25848017 MGI:5637600 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 part_of ISO (PMID:22504299) RGD PMID:22504299 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 part_of ISO (PMID:22504299) RGD PMID:22504299 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 part_of ISO (PMID:19160485) RGD PMID:19160485 NCBI chr 5:153,753,508...153,774,613
Ensembl chr 5:153,753,569...153,774,609
JBrowse link
alpha DNA polymerase:primase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit part_of IDA
ISO
IBA
IEA
ISS
IC
(PMID:2175912), (PMID:22465957), (PMID:26975377), (PMID:8026492)
(MGI:1203906|PMID:9584195), (MGI:6478526|PMID:8026492)
PMID:21873635
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:2175912 PMID:8026492 PMID:9584195 PMID:22465957 PMID:26975377 More... GO_REF:0000024 GO_REF:0000107 MGI:1203906 MGI:6478526, RGD:1580605, RGD:13792537, RGD:2307013 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit part_of TAS
ISS
ISO
IEA
IBA
IC
GO_REF:0000024
(PMID:22465957), (PMID:26975377), (PMID:8026492)
(MGI:1203906|PMID:9584195), (MGI:6478526|PMID:8026492)
GO_REF:0000107
PMID:21873635
UniProt
RGD
Ensembl
PMID:8026492 PMID:9584195 PMID:22465957 PMID:26975377 PMID:11536367 More... GO_REF:0000024 GO_REF:0000107 MGI:1203906 MGI:6478526, RGD:633584, RGD:13792537, RGD:2307013 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
JBrowse link
G Prim1 DNA primase subunit 1 part_of IBA
ISO
PMID:21873635
(PMID:26975377), (PMID:8026492)
(MGI:6478526|PMID:8026492)
RGD PMID:8026492 PMID:26975377 PMID:21873635 MGI:6478526, RGD:13792537 NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526
JBrowse link
G Prim2 DNA primase subunit 2 part_of IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:26975377), (PMID:8026492)
(MGI:6478526|PMID:8026492)
UniProt
RGD
PMID:8026492 PMID:26975377 PMID:21873635 GO_REF:0000024 MGI:6478526, RGD:13792537 NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030
JBrowse link
CMG complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins4 GINS complex subunit 4 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr13:39,826,745...39,851,937
Ensembl chr13:39,826,763...39,851,960
JBrowse link
CST complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctc1 CST telomere replication complex component 1 part_of IBA
ISO
PMID:21873635
(PMID:19854130), (PMID:22763445)
(MGI:4441108|PMID:19854130)
RGD PMID:19854130 PMID:22763445 PMID:21873635 MGI:4441108, RGD:13792537 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298
JBrowse link
G Stn1 STN1 subunit of CST complex part_of IEA
ISO
GO_REF:0000107
(MGI:4441108|PMID:19854130)
(PMID:19854130), (PMID:22763445)
Ensembl
RGD
PMID:19854130 PMID:22763445 GO_REF:0000107 MGI:4441108 NCBI chr 1:246,391,311...246,429,844
Ensembl chr 1:246,395,613...246,429,531
JBrowse link
G Ten1 TEN1 subunit of CST complex part_of IBA
ISO
PMID:21873635
(MGI:4441108|PMID:19854130)
(PMID:19854130), (PMID:22763445)
RGD PMID:19854130 PMID:22763445 PMID:21873635 MGI:4441108, RGD:13792537 NCBI chr10:101,431,328...101,455,105
Ensembl chr10:101,431,328...101,453,052
JBrowse link
delta DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit part_of IC
IEA
ISO
IBA
IDA
GO_REF:0000107
(MGI:6383350|PMID:11595739)
PMID:21873635
(PMID:11595739), (PMID:22465957)
Ensembl
RGD
PMID:11595739 PMID:22465957 PMID:7503737 PMID:21873635 PMID:10541966 GO_REF:0000107 MGI:6383350, RGD:2307013, RGD:13792537, RGD:729526 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit part_of IC
ISO
IBA
IDA
(MGI:6383350|PMID:11595739)
PMID:21873635
(PMID:11595739), (PMID:22465957)
RGD PMID:11595739 PMID:22465957 PMID:7503737 PMID:21873635 PMID:10541966 MGI:6383350, RGD:2307013, RGD:13792537, RGD:729526 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit part_of IC
ISO
IBA
(MGI:6383350|PMID:11595739)
PMID:21873635
(PMID:11595739), (PMID:22465957)
RGD PMID:11595739 PMID:22465957 PMID:7503737 PMID:21873635 MGI:6383350, RGD:2307013, RGD:13792537 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit part_of IC
IBA
PMID:21873635 RGD
GO_Central
PMID:7503737 PMID:21873635 RGD:2307013, RGD:13792537 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
DNA recombinase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rag1 recombination activating 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:87,917,061...87,928,158
Ensembl chr 3:87,917,004...87,928,291
JBrowse link
G Rag2 recombination activating 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:87,902,373...87,910,227
Ensembl chr 3:87,902,238...87,911,066
JBrowse link
DNA replication factor A complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC095390.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Bcas2 BCAS2, pre-mRNA processing factor colocalizes_with
part_of
ISO
IEA
(PMID:24332808)
GO_REF:0000107
RGD
Ensembl
PMID:24332808 GO_REF:0000107 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389
JBrowse link
G Cdc5l cell division cycle 5-like colocalizes_with ISO
ISS
(PMID:24332808)
GO_REF:0000024
RGD
UniProt
PMID:24332808 GO_REF:0000024 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease colocalizes_with ISO (PMID:7700386) RGD PMID:7700386 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Helb DNA helicase B colocalizes_with
part_of
ISO
IEA
(PMID:26774285)
GO_REF:0000107
RGD
Ensembl
PMID:26774285 GO_REF:0000107 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
JBrowse link
G LOC100362927 replication protein A3-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
JBrowse link
G Plrg1 pleiotropic regulator 1 colocalizes_with ISO
ISS
(PMID:24332808)
GO_REF:0000024
RGD
UniProt
PMID:24332808 GO_REF:0000024 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522
JBrowse link
G Prpf19 pre-mRNA processing factor 19 colocalizes_with ISO
ISS
(PMID:24332808)
GO_REF:0000024
RGD
UniProt
PMID:24332808 GO_REF:0000024 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Rpa1 replication protein A1 part_of IDA
ISO
IBA
UniProtKB:P15927 (PMID:11927569), (PMID:16135809), (PMID:27723717), (PMID:27723720)
PMID:21873635
RGD PMID:11927569 PMID:16135809 PMID:27723717 PMID:27723720 PMID:8463251 More... RGD:2307012, RGD:13792537, RGD:2307013 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 part_of IDA
ISO
IBA
UniProtKB:P27694 (PMID:11927569), (PMID:16135809), (PMID:2406247), (PMID:27723717), (PMID:27723720)
PMID:21873635
RGD PMID:2406247 PMID:11927569 PMID:16135809 PMID:27723717 PMID:27723720 More... RGD:2307012, RGD:13792537, RGD:2307013 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 part_of IDA
IBA
ISO
PMID:21873635
(PMID:11927569)
RGD PMID:11927569 PMID:7503737 PMID:21873635 RGD:2307013, RGD:13792537 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 colocalizes_with ISS
ISO
GO_REF:0000024
(PMID:19793862), (PMID:19793863)
UniProt
RGD
PMID:19793862 PMID:19793863 GO_REF:0000024 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146
JBrowse link
G Tonsl tonsoku-like, DNA repair protein colocalizes_with ISO
ISS
(PMID:21055983)
GO_REF:0000024
RGD
UniProt
PMID:21055983 GO_REF:0000024 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor colocalizes_with
part_of
ISO
IEA
(PMID:7700386)
GO_REF:0000107
RGD
Ensembl
PMID:7700386 GO_REF:0000107 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
DNA replication preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619
JBrowse link
G Orc3 origin recognition complex, subunit 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:49,123,758...49,181,552
Ensembl chr 5:49,126,955...49,181,633
JBrowse link
GINS complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins1 GINS complex subunit 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936
JBrowse link
G Gins2 GINS complex subunit 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:48,626,770...48,639,523
Ensembl chr19:48,626,770...48,639,339
JBrowse link
G Gins3 GINS complex subunit 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:9,420,085...9,428,621
Ensembl chr19:9,420,086...9,428,687
JBrowse link
G Gins4 GINS complex subunit 4 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273
JBrowse link
nuclear pre-replicative complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Orc3 origin recognition complex, subunit 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:49,123,758...49,181,552
Ensembl chr 5:49,126,955...49,181,633
JBrowse link
G Wdr18 WD repeat domain 18 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:9,740,245...9,748,041
Ensembl chr 7:9,739,604...9,748,070
JBrowse link
nuclear telomere cap complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor part_of ISO (PMID:16880378)
(MGI:3829120|PMID:18185984)
RGD PMID:16880378 PMID:18185984 MGI:3829120 NCBI chr19:33,586,739...33,589,481
Ensembl chr19:33,586,745...33,589,461
JBrowse link
G Pot1 protection of telomeres 1 part_of ISO
IBA
(PMID:16880378)
(MGI:3692019|PMID:17053789)
PMID:21873635
RGD PMID:16880378 PMID:17053789 PMID:21873635 MGI:3692019, RGD:13792537 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042
JBrowse link
G Pot1b protection of telomeres 1B part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:9,670,355...9,728,624
Ensembl chr 9:9,670,362...9,728,532
JBrowse link
G Terf1 telomeric repeat binding factor 1 part_of IBA
ISO
PMID:21873635
(MGI:77658|PMID:7502076)
(PMID:16880378)
RGD PMID:7502076 PMID:16880378 PMID:21873635 MGI:77658, RGD:13792537 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340
JBrowse link
G Terf2 telomeric repeat binding factor 2 part_of ISO (PMID:15181449), (PMID:16880378) RGD PMID:15181449 PMID:16880378 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819
JBrowse link
G Tinf2 TERF1 interacting nuclear factor 2 part_of ISO (PMID:16880378) RGD PMID:16880378 NCBI chr15:29,170,663...29,178,015
Ensembl chr15:29,170,652...29,176,984
JBrowse link
nucleosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012583.2 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G AABR07022134.1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G AABR07027811.2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043
G AABR07040686.1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr  X:100,270,675...100,270,878 JBrowse link
G AABR07044065.1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr19:50,114,362...50,114,880 JBrowse link
G AABR07062859.1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043
G AC119603.1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:150,281,849...150,282,259 JBrowse link
G Cenpa centromere protein A part_of ISO (PMID:27499292) RGD PMID:27499292 NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675
JBrowse link
G Glyr1 glyoxylate reductase 1 homolog part_of ISO
ISS
(PMID:23260659)
GO_REF:0000024
RGD
UniProt
PMID:23260659 GO_REF:0000024 NCBI chr10:10,532,036...10,567,639
Ensembl chr10:10,532,154...10,567,637
JBrowse link
G H1f0 H1.0 linker histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,391,106...41,392,611 JBrowse link
G H1f4 H1.4 linker histone, cluster member part_of IDA PMID:9109385 CAFA PMID:9109385 RGD:12793017 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f8 H1.8 linker histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H2ab3 H2A.B variant histone 3 part_of ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:82,362,633...82,362,983
Ensembl chr  X:82,362,633...82,362,983
JBrowse link
G H2ac1 H2A clustered histone 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,171,384...41,171,776
Ensembl chr17:41,135,489...41,172,022
JBrowse link
G H2ac12 H2A clustered histone 12 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,486,315...42,486,880 JBrowse link
G H2ac20 H2A clustered histone 20 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:183,779,879...183,780,324 JBrowse link
G H2ac21 H2A clustered histone 21 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:183,779,385...183,779,777 JBrowse link
G H2ac4 H2A clustered histone 4 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,799,953...42,800,345
Ensembl chr17:42,799,652...42,800,381
JBrowse link
G H2aj H2A.J histone part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:169,675,718...169,676,202
Ensembl chr 4:169,675,752...169,677,006
JBrowse link
G H2ap H2A.P histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:12,907,962...12,908,516 JBrowse link
G H2ax H2A.X variant histone part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:44,671,927...44,673,257
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G H2az1 H2A.Z variant histone 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:226,355,769...226,357,878
Ensembl chr 2:226,355,708...226,358,485
JBrowse link
G H2az2 H2A.Z variant histone 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:81,293,299...81,312,209
Ensembl chr14:81,293,299...81,312,144
JBrowse link
G H2bc1 H2B clustered histone 1 part_of ISS
ISO
GO_REF:0000024
(MGI:3702345|PMID:17261847), (MGI:5502464|PMID:23884607), (MGI:5897488|PMID:28366643)
(PMID:24699735)
UniProt
RGD
PMID:17261847 PMID:23884607 PMID:24699735 PMID:28366643 GO_REF:0000024 MGI:3702345 MGI:5502464 MGI:5897488 NCBI chr17:41,172,041...41,172,510 JBrowse link
G H2bc12 H2B clustered histone 12 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,485,746...42,486,126 JBrowse link
G H2bc9 H2B clustered histone 9 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,470,593...42,478,605 JBrowse link
G H2bu1 H2B.U histone 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:43,732,737...43,733,484
Ensembl chr10:43,732,864...43,736,277
JBrowse link
G H3c1 H3 clustered histone 1 part_of ISO
IEA
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
GO_REF:0000043
RGD
UniProt
PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 GO_REF:0000043 NCBI chr17:41,367,824...41,368,902 JBrowse link
G H3c13 H3 clustered histone 13 part_of ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr17:41,529,860...41,532,577 JBrowse link
G H3f3a H3.3 histone A part_of ISO (PMID:19633671), (PMID:21636898), (PMID:25615412) RGD PMID:19633671 PMID:21636898 PMID:25615412 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B part_of ISO (PMID:19633671), (PMID:21636898), (PMID:25615412) RGD PMID:19633671 PMID:21636898 PMID:25615412 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G H3f3c H3 histone family member 3C part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:86,501,094...86,502,133
Ensembl chr 7:86,501,071...86,502,140
JBrowse link
G H3f4 H3.4 histone part_of ISO (PMID:20498094), (PMID:25615412) RGD PMID:20498094 PMID:25615412 NCBI chr10:43,740,797...43,741,207 JBrowse link
G H4c3 H4 clustered histone 3 part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4f16 H4 histone 16 part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4f3 H1.3 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 part_of ISO (PMID:12920187) RGD PMID:12920187 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Hist1h2ac histone cluster 1 H2A family member C part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,478,803...42,484,078 JBrowse link
G Hist1h2af histone cluster 1 H2A family member F part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,379,404...41,379,796
Ensembl chr17:41,379,404...41,379,796
JBrowse link
G Hist1h2ah histone cluster 1 H2A family member H part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,384,521...41,385,018 JBrowse link
G Hist1h2ai histone cluster 1, H2ai part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,718,310...42,718,772 JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 part_of ISO
IEA
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
GO_REF:0000043
RGD
UniProt
PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 GO_REF:0000043 NCBI chr17:41,568,666...41,569,076
Ensembl chr17:41,568,471...41,569,109
JBrowse link
G hist1h2ail2 histone cluster 1, H2ai-like2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,753,166...42,753,625 JBrowse link
G Hist1h2an histone cluster 1, H2an part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,534,653...41,535,259
Ensembl chr17:41,534,691...41,539,869
JBrowse link
G Hist1h2ao histone cluster 1, H2ao part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,704,740...42,705,130 JBrowse link
G Hist1h2bc histone cluster 1, H2bc part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,692,335...42,696,860 JBrowse link
G Hist1h2bd histone cluster 1 H2B family member D part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,792,887...42,793,268 JBrowse link
G Hist1h2bg histone cluster 1, H2bg part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,571,278...41,571,658
Ensembl chr17:41,571,210...41,571,896
JBrowse link
G Hist1h2bl histone cluster 1 H2B family member l part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,708,646...42,709,435 JBrowse link
G Hist1h2bo histone cluster 1 H2B family member o part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,716,433...42,718,046
Ensembl chr17:42,673,067...42,718,095
JBrowse link
G Hist1h2bq histone cluster 1 H2B family member Q part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,432,100...41,441,487
Ensembl chr17:41,429,164...41,442,153
JBrowse link
G Hist1h3b histone cluster 1, H3b part_of ISO
IEA
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
GO_REF:0000043
RGD
UniProt
PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 GO_REF:0000043 NCBI chr17:42,722,805...42,723,925 JBrowse link
G Hist1h4b histone cluster 1 H4 family member B part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:42,698,054...42,698,365
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h2aa2 histone cluster 2 H2A family member A2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:183,801,369...183,801,987 JBrowse link
G Hist2h2aa3 histone cluster 2 H2A family member A3 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:183,808,398...183,808,922 JBrowse link
G Hist2h2be histone cluster 2 H2B family member E part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:183,780,449...183,783,030 JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 part_of ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,837,311...183,837,721
Ensembl chr 2:183,837,303...183,837,752
JBrowse link
G Hist2h4 histone cluster 2, H4 part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G Hist3h2a histone cluster 3, H2a part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:43,733,702...43,735,254
Ensembl chr10:43,733,668...43,744,874
JBrowse link
G Hist3h2ba histone cluster 3, H2ba part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:43,725,836...43,726,465
Ensembl chr10:43,724,930...43,727,107
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:150,435,781...150,463,004
Ensembl chr 5:150,433,740...150,463,000
JBrowse link
G Irf4 interferon regulatory factor 4 part_of ISO (MGI:3615721|PMID:16428437) RGD PMID:16428437 MGI:3615721 NCBI chr17:33,721,800...33,742,570
Ensembl chr17:33,721,811...33,740,070
JBrowse link
G Kat6a lysine acetyltransferase 6A part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606
JBrowse link
G Kat6b lysine acetyltransferase 6B part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316
JBrowse link
G Kdm1b lysine demethylase 1B part_of ISO (PMID:23260659) RGD PMID:23260659 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
JBrowse link
G LOC100363125 rCG42854-like part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:12,905,312...12,905,916 JBrowse link
G LOC100364835 histone cluster 1, H2bd-like part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,520,767...41,521,240 JBrowse link
G LOC100365043 histone cluster 1, H2bd-like part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,561,549...41,563,239
Ensembl chr17:41,562,508...41,562,963
JBrowse link
G LOC100910200 histone H2B type 1-C/E/G-like part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,751,843...42,752,935 JBrowse link
G LOC100910554 histone H2A type 1-like part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,696,845...42,697,423
Ensembl chr17:42,696,791...42,697,295
JBrowse link
G LOC100912290 histone H4-like part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC102548682 histone H4-like part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,368,743...41,426,735 JBrowse link
G LOC102549061 histone H2B type 1-N-like part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,380,058...41,380,685 JBrowse link
G LOC102551184 histone H4-like part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,526,192...41,575,488 JBrowse link
G LOC103690190 histone H2A type 1-E part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,707,863...42,708,420 JBrowse link
G LOC103693372 histone H3.3-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:18,453,946...18,454,347 JBrowse link
G LOC680063 similar to histone 2a part_of IEA GO_REF:0000043 UniProt GO_REF:0000043
G LOC684444 similar to HIStone family member (his-41) part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:30,387,094...30,387,613
Ensembl chr 2:30,386,982...30,387,633
JBrowse link
G LOC684773 similar to histone 2a part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,532,630...41,533,464 JBrowse link
G LOC684797 similar to Histone H2B 291B part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,534,055...41,534,478 JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC690126 hypothetical protein LOC690126 part_of ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,797,721...183,800,653 JBrowse link
G Macroh2a1 macroH2A.1 histone part_of IDA
IEA
GO_REF:0000104 UniProt PMID:1529340 GO_REF:0000104, RGD:728409 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 part_of ISO
ISS
(PMID:20871592)
GO_REF:0000024
RGD
UniProt
PMID:20871592 GO_REF:0000024 NCBI chr15:30,800,546...30,828,415 JBrowse link
G Prm1 protamine 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,871,909...4,872,155 JBrowse link
G Prm2 protamine 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,876,398...4,876,834
Ensembl chr10:4,873,372...4,877,026
JBrowse link
G Prm3 protamine 3 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,877,471...4,877,985
Ensembl chr10:4,877,471...4,877,985
JBrowse link
G RGD1562306 similar to H2A histone family, member Z part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:6,362,973...6,363,359 JBrowse link
G RGD1562378 histone H4 variant H4-v.1 part_of ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G RGD1564447 similar to Zgc:56193 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:42,494,007...42,495,112
Ensembl chr 9:42,494,353...42,494,763
JBrowse link
G RGD1564548 similar to H3 histone, family 3B part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:100,253,160...100,257,870 JBrowse link
G Shprh SNF2 histone linker PHD RING helicase part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,528,827...5,602,537
Ensembl chr 1:5,528,888...5,602,527
JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 part_of ISO (MGI:3528541|PMID:15632077) RGD PMID:15632077 MGI:3528541 NCBI chr 2:6,767,015...6,874,428
Ensembl chr 2:6,767,015...6,867,149
JBrowse link
G Sphk2 sphingosine kinase 2 part_of ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:96,180,872...96,188,592
Ensembl chr 1:96,180,887...96,188,391
JBrowse link
G Tcf3 transcription factor 3 part_of ISO (MGI:3615721|PMID:16428437) RGD PMID:16428437 MGI:3615721 NCBI chr 7:9,280,571...9,302,315
Ensembl chr 7:9,280,571...9,302,314
JBrowse link
G Tnp1 transition protein 1 part_of ISS
ISO
IBA
GO_REF:0000024
(MGI:5897488|PMID:28366643)
PMID:21873635
(PMID:12743712)
UniProt
RGD
PMID:12743712 PMID:28366643 PMID:21873635 GO_REF:0000024 MGI:5897488, RGD:13792537 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274
JBrowse link
G Tnp2 transition protein 2 part_of IEA
ISO
ISS
GO_REF:0000107
(MGI:5897488|PMID:28366643)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:28366643 GO_REF:0000024 GO_REF:0000107 MGI:5897488 NCBI chr10:4,879,812...4,880,540
Ensembl chr10:4,879,812...4,880,538
JBrowse link
replisome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Donson DNA replication fork stabilization factor DONSON part_of ISO (PMID:28191891) RGD PMID:28191891 NCBI chr11:30,911,616...30,933,150
Ensembl chr11:30,923,239...30,932,889
JBrowse link
shelterin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor part_of ISO
IBA
(PMID:15383534), (PMID:21852327), (PMID:23685356)
PMID:21873635
RGD PMID:15383534 PMID:21852327 PMID:23685356 PMID:21873635 RGD:13792537 NCBI chr19:33,586,739...33,589,481
Ensembl chr19:33,586,745...33,589,461
JBrowse link
G Pot1 protection of telomeres 1 part_of ISO (PMID:15383534), (PMID:21852327), (PMID:23685356) RGD PMID:15383534 PMID:21852327 PMID:23685356 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042
JBrowse link
G Terb1 telomere repeat binding bouquet formation protein 1 part_of ISO (MGI:5704279|PMID:26548954) RGD PMID:26548954 MGI:5704279 NCBI chr19:473,720...528,069
Ensembl chr19:473,218...528,084
JBrowse link
G Terf1 telomeric repeat binding factor 1 part_of ISO (PMID:15383534), (PMID:21852327), (PMID:23685356) RGD PMID:15383534 PMID:21852327 PMID:23685356 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340
JBrowse link
G Terf2 telomeric repeat binding factor 2 part_of ISO
IBA
(PMID:15383534), (PMID:21852327), (PMID:23685356)
PMID:21873635
RGD PMID:15383534 PMID:21852327 PMID:23685356 PMID:21873635 RGD:13792537 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819
JBrowse link
G Terf2ip TERF2 interacting protein part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:39,976,965...39,984,055
Ensembl chr19:39,976,906...39,984,064
JBrowse link
G Tinf2 TERF1 interacting nuclear factor 2 part_of ISO
IBA
(PMID:15383534), (PMID:21852327), (PMID:23685356)
PMID:21873635
RGD PMID:15383534 PMID:21852327 PMID:23685356 PMID:21873635 RGD:13792537 NCBI chr15:29,170,663...29,178,015
Ensembl chr15:29,170,652...29,176,984
JBrowse link
transcription preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:132,034,380...132,081,296
Ensembl chr 6:132,037,272...132,081,278
JBrowse link
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Esr1 estrogen receptor 1 part_of ISO
IEA
(PMID:9841876)
GO_REF:0000107
RGD
Ensembl
PMID:9841876 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 part_of ISO (PMID:8224850) RGD PMID:8224850 NCBI chr 6:110,488,891...110,521,059
Ensembl chr 6:110,488,931...110,521,511
JBrowse link
G Gtf2b general transcription factor IIB part_of IEA
ISO
IBA
GO_REF:0000107
(PMID:9841876)
PMID:21873635
Ensembl
RGD
PMID:9841876 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
JBrowse link
G Gtf2e1 general transcription factor IIE subunit 1 part_of ISO (PMID:9841876) RGD PMID:9841876 NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 part_of ISO
IEA
(PMID:9841876)
GO_REF:0000107
RGD
Ensembl
PMID:9841876 GO_REF:0000107 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr12:32,009,010...32,025,484
Ensembl chr12:32,009,014...32,025,497
JBrowse link
G Tbp TATA box binding protein part_of ISO (PMID:9841876) RGD PMID:9841876 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20010
    protein-containing complex 6011
      protein-DNA complex 208
        DNA recombinase complex 2
        DNA replication preinitiation complex + 7
        HU-DNA complex 0
        IHF-DNA complex 0
        SeqA-DNA complex 0
        enhanceosome 0
        invertasome 0
        nucleosome + 105
        nucleotide-excision repair, preincision complex 0
        pre-replicative complex + 2
        primosome complex + 0
        protein-DNA ISRE complex 0
        replisome + 23
        retroviral intasome 0
        telomere cap complex + 11
        telomere-telomerase complex 0
        transcription preinitiation complex 10
paths to the root