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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-DNA complex
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Accession:GO:0032993 term browser browse the term
Definition:A macromolecular complex containing both protein and DNA molecules.
Comment:Note that this term is intended to classify complexes that have DNA as one of the members of the complex, that is, the complex does not exist if DNA is not present. Protein complexes that interact with DNA e.g. transcription factor complexes should not be classified here.


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protein-DNA complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf6b activating transcription factor 6 beta ISO (PMID:11256944) RGD PMID:11256944 NCBI chr20:4,414,283...4,422,283
Ensembl chr20:4,414,276...4,422,283
JBrowse link
G Cdc5l cell division cycle 5-like IDA RGD PMID:11694351 RGD:10047049 NCBI chr 9:17,949,764...17,988,514
Ensembl chr 9:17,949,764...17,988,509
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO (MGI:MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:MGI:5317044 NCBI chr 4:157,612,531...157,645,660
Ensembl chr 4:157,612,536...157,645,659
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
ISS
(PMID:10825188)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:10825188 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 ISO
IEA
(PMID:15322075)
GO_REF:0000107
RGD
Ensembl
PMID:15322075 GO_REF:0000107 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084
JBrowse link
G Ep300 E1A binding protein p300 IDA
IPI
PMID:10362258 RGD
ARUK-UCL
PMID:19765194, PMID:10362258 RGD:2316171, RGD:13506263 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Esr2 estrogen receptor 2 IDA RGD PMID:10342845 RGD:8694156 NCBI chr 6:99,163,953...99,214,711
Ensembl chr 6:99,164,357...99,214,251
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO
IEA
(MGI:MGI:3768605|PMID:17785448)
GO_REF:0000107
RGD
Ensembl
PMID:17785448 GO_REF:0000107, MGI:MGI:3768605 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO (PMID:10704222) RGD PMID:10704222 NCBI chr 6:109,300,433...109,303,299
Ensembl chr 6:109,300,433...109,303,299
JBrowse link
G Gata1 GATA binding protein 1 ISO (PMID:12609092) RGD PMID:12609092 NCBI chr  X:15,273,937...15,281,759
Ensembl chr  X:15,378,789...15,382,066
JBrowse link
G Gtf2b general transcription factor IIB ISS
ISO
GO_REF:0000024
(PMID:10619841), (PMID:29158257), (PMID:8413225), (PMID:8515820), (PMID:8516312)
UniProt
RGD
PMID:8413225, PMID:8515820, PMID:8516312, PMID:10619841, PMID:29158257 GO_REF:0000024 NCBI chr 2:248,709,433...248,727,741
Ensembl chr 2:248,715,281...248,727,741
JBrowse link
G Hhex hematopoietically expressed homeobox ISO (PMID:18755198) RGD PMID:18755198 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:19465398)
GO_REF:0000024
RGD
UniProt
PMID:19465398 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IDA RGD PMID:9553145 RGD:2303817 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Hoxa11 homeobox A11 ISO (MGI:MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:MGI:3768605 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:MGI:5317044 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Jund JunD proto-oncogene, AP-1 transcription factor subunit IDA PMID:10523647 ParkinsonsUK-UCL PMID:10523647 RGD:10047214 NCBI chr16:20,485,028...20,486,707
Ensembl chr16:20,485,029...20,486,707
JBrowse link
G Jup junction plakoglobin ISO (PMID:14661054) RGD PMID:14661054 NCBI chr10:88,280,517...88,307,451
Ensembl chr10:88,279,632...88,307,412
JBrowse link
G Kcnip3 potassium voltage-gated channel interacting protein 3 IDA
ISO
(MGI:MGI:5882899|PMID:15746104) RGD PMID:15746104, PMID:18191896 MGI:MGI:5882899, RGD:7207199 NCBI chr 3:120,023,062...120,087,650
Ensembl chr 3:120,023,917...120,087,136
JBrowse link
G Kdm5a lysine demethylase 5A ISO (MGI:MGI:3789777|PMID:18483221) RGD PMID:18483221 MGI:MGI:3789777 NCBI chr 4:152,892,388...152,972,196
Ensembl chr 4:152,892,388...152,972,201
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO
IEA
(PMID:10825188)
GO_REF:0000107
RGD
Ensembl
PMID:10825188 GO_REF:0000107 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Max MYC associated factor X ISO (PMID:16171389), (PMID:9399572) RGD PMID:9399572, PMID:16171389 NCBI chr 6:99,984,260...100,011,460
Ensembl chr 6:99,984,260...100,011,388
JBrowse link
G Med1 mediator complex subunit 1 IDA RGD PMID:10037764 RGD:5134969 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Myog myogenin IDA PMID:14751541 UniProt PMID:14751541 RGD:8553747 NCBI chr13:51,126,459...51,129,048
Ensembl chr13:51,126,459...51,129,048
JBrowse link
G Nfe2 nuclear factor, erythroid 2 ISO (PMID:12609092) RGD PMID:12609092 NCBI chr 7:144,872,739...144,880,092
Ensembl chr 7:144,872,747...144,880,092
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 ISO (MGI:MGI:2677605|PMID:14517290) RGD PMID:14517290 MGI:MGI:2677605 NCBI chr 3:62,497,568...62,525,146
Ensembl chr 3:62,497,571...62,524,996
JBrowse link
G Nfya nuclear transcription factor Y subunit alpha ISO
IEA
(PMID:11256944)
GO_REF:0000107
RGD
Ensembl
PMID:11256944 GO_REF:0000107 NCBI chr 9:14,551,752...14,577,002
Ensembl chr 9:14,551,758...14,576,967
JBrowse link
G Nfyb nuclear transcription factor Y subunit beta ISO (PMID:11256944) RGD PMID:11256944 NCBI chr 7:27,081,667...27,097,481
Ensembl chr 7:27,081,667...27,097,479
JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma ISO (PMID:11256944) RGD PMID:11256944 NCBI chr 5:139,687,442...139,760,154
Ensembl chr 5:139,687,448...139,749,050
JBrowse link
G Nkx2-5 NK2 homeobox 5 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22849347)
Ensembl
UniProt
RGD
PMID:22849347 GO_REF:0000024, GO_REF:0000107 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Npm1 nucleophosmin 1 ISO (PMID:19160485) RGD PMID:19160485 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator ISO (PMID:11056169) RGD PMID:11056169 NCBI chr 1:194,767,484...194,769,519
Ensembl chr 1:194,767,474...194,769,524
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 ISO (PMID:22504299) RGD PMID:22504299 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:3768605|PMID:17785448)
GO_REF:0000024
RGD
UniProt
PMID:17785448 GO_REF:0000024, MGI:MGI:3768605 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Polr2h RNA polymerase II, I and III subunit H ISO (PMID:16632472) RGD PMID:16632472 NCBI chr11:83,877,760...83,882,208
Ensembl chr11:83,878,006...83,882,117
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO (PMID:22504299) RGD PMID:22504299 NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein ISO (PMID:12370410) RGD PMID:12370410 NCBI chr 4:152,429,826...152,451,875
Ensembl chr 4:152,430,187...152,451,609
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region IDA RGD PMID:10773077 RGD:2306426 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
G Sox12 SRY-box transcription factor 12 ISO (MGI:MGI:3803393|PMID:18505825) RGD PMID:18505825 MGI:MGI:3803393 NCBI chr 3:147,864,374...147,865,393
Ensembl chr 3:147,864,374...147,865,393
JBrowse link
G Sp1 Sp1 transcription factor IDA
IPI
PMID:10362258 RGD
ARUK-UCL
PMID:19765194, PMID:10362258 RGD:2316171, RGD:13506263 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Sp3 Sp3 transcription factor IPI PMID:10362258 ARUK-UCL PMID:10362258 RGD:13506263 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692
JBrowse link
G St18 ST18 C2H2C-type zinc finger transcription factor IEA
ISO
GO_REF:0000107
(PMID:18676404)
Ensembl
RGD
PMID:18676404 GO_REF:0000107 NCBI chr 5:12,437,617...12,787,223
Ensembl chr 5:12,437,525...12,563,429
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit ISO
IEA
(MGI:MGI:3789777|PMID:18483221)
GO_REF:0000107
RGD
Ensembl
PMID:18483221 GO_REF:0000107, MGI:MGI:3789777 NCBI chr10:67,325,101...67,371,588
Ensembl chr10:67,325,347...67,369,668
JBrowse link
G Tbx5 T-box transcription factor 5 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26926761)
Ensembl
UniProt
RGD
PMID:26926761 GO_REF:0000024, GO_REF:0000107 NCBI chr12:42,059,688...42,148,226
Ensembl chr12:42,097,626...42,148,146
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO (PMID:14661054) RGD PMID:14661054 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
G Tead4 TEA domain transcription factor 4 ISO (MGI:MGI:5426342|PMID:22529382) RGD PMID:22529382 MGI:MGI:5426342 NCBI chr 4:161,542,566...161,619,848
Ensembl chr 4:161,540,130...161,587,222
JBrowse link
G Top1 DNA topoisomerase I IEA
ISO
GO_REF:0000107
(PMID:10497031)
Ensembl
RGD
PMID:10497031 GO_REF:0000107 NCBI chr 3:156,635,688...156,717,686
Ensembl chr 3:156,642,464...156,717,686
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:MGI:5637600|PMID:25848017) RGD PMID:25848017 MGI:MGI:5637600 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 ISO (PMID:22504299) RGD PMID:22504299 NCBI chr 9:79,659,275...79,748,050
Ensembl chr 9:79,659,251...79,748,078
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 ISO (PMID:22504299) RGD PMID:22504299 NCBI chr 7:123,259,881...123,280,613
Ensembl chr 7:123,259,761...123,280,612
JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 ISO (PMID:19160485) RGD PMID:19160485 NCBI chr 5:159,993,799...160,014,899
Ensembl chr 5:159,993,799...160,014,895
JBrowse link
alpha DNA polymerase:primase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit IDA
ISO
IBA
ISS
IEA
IC
(PMID:2175912), (PMID:22465957)
PMID:21873635
GO_REF:0000024
GO_REF:0000107
(MGI:MGI:1203906|PMID:9584195)
RGD
UniProt
Ensembl
PMID:2175912, PMID:9584195, PMID:22465957, PMID:7670930, PMID:21873635, PMID:7503737 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1203906, RGD:1580605, RGD:13792537, RGD:2307013 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit TAS
ISO
IBA
IEA
IC
(PMID:22465957)
PMID:21873635
GO_REF:0000107
(MGI:MGI:1203906|PMID:9584195)
RGD
Ensembl
PMID:9584195, PMID:22465957, PMID:11536367, PMID:21873635, PMID:7503737 GO_REF:0000107, MGI:MGI:1203906, RGD:633584, RGD:13792537, RGD:2307013 NCBI chr 1:221,297,417...221,321,601
Ensembl chr 1:221,273,538...221,321,570
JBrowse link
G Prim1 DNA primase subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:2,435,524...2,451,169
Ensembl chr 7:2,435,553...2,451,165
JBrowse link
G Prim2 DNA primase subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:38,535,435...38,745,058
Ensembl chr 9:38,536,920...38,745,099
JBrowse link
CMG complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins4 GINS complex subunit 4 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr16:73,584,412...73,596,808
Ensembl chr16:73,584,521...73,596,793
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr13:45,042,882...45,068,073
Ensembl chr13:45,042,882...45,068,077
JBrowse link
CST complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctc1 CST telomere replication complex component 1 ISO
IBA
(MGI:MGI:4441108|PMID:19854130)
(PMID:19854130), (PMID:22763445)
PMID:21873635
RGD PMID:19854130, PMID:22763445, PMID:21873635 MGI:MGI:4441108, RGD:13792537 NCBI chr10:55,596,172...55,616,873
Ensembl chr10:55,596,148...55,616,889
JBrowse link
G Stn1 STN1 subunit of CST complex IEA
ISO
GO_REF:0000107
(PMID:19854130), (PMID:22763445)
(MGI:MGI:4441108|PMID:19854130)
Ensembl
RGD
PMID:19854130, PMID:22763445 GO_REF:0000107, MGI:MGI:4441108 NCBI chr 1:267,281,786...267,315,714
Ensembl chr 1:267,281,764...267,315,729
JBrowse link
G Ten1 TEN1 subunit of CST complex ISO
IBA
(MGI:MGI:4441108|PMID:19854130)
PMID:21873635
(PMID:19854130), (PMID:22763445)
RGD PMID:19854130, PMID:22763445, PMID:21873635 MGI:MGI:4441108, RGD:13792537 NCBI chr10:105,073,077...105,095,094
Ensembl chr10:105,073,077...105,095,094
JBrowse link
delta DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit IC
ISO
IEA
IBA
IDA
(MGI:MGI:6383350|PMID:11595739)
GO_REF:0000107
(PMID:11595739), (PMID:22465957)
PMID:21873635
RGD
Ensembl
PMID:11595739, PMID:22465957, PMID:7503737, PMID:21873635, PMID:10541966 GO_REF:0000107, MGI:MGI:6383350, RGD:2307013, RGD:13792537, RGD:729526 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit IC
ISO
IBA
IDA
(MGI:MGI:6383350|PMID:11595739)
(PMID:11595739), (PMID:22465957)
PMID:21873635
RGD PMID:11595739, PMID:22465957, PMID:7503737, PMID:21873635, PMID:10541966 MGI:MGI:6383350, RGD:2307013, RGD:13792537, RGD:729526 NCBI chr14:86,111,416...86,117,578
Ensembl chr14:86,111,294...86,117,578
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit IC
ISO
IBA
(MGI:MGI:6383350|PMID:11595739)
(PMID:11595739), (PMID:22465957)
PMID:21873635
RGD PMID:11595739, PMID:22465957, PMID:7503737, PMID:21873635 MGI:MGI:6383350, RGD:2307013, RGD:13792537 NCBI chr 1:165,085,142...165,122,385
Ensembl chr 1:165,083,622...165,123,455
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit IC
IBA
PMID:21873635 RGD
GO_Central
PMID:7503737, PMID:21873635 RGD:2307013, RGD:13792537 NCBI chr 1:219,480,841...219,483,244
Ensembl chr 1:219,481,575...219,483,241
JBrowse link
DNA recombinase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rag1 recombination activating 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:91,206,394...91,217,491
Ensembl chr 3:91,206,394...91,217,491
JBrowse link
G Rag2 recombination activating 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:91,191,837...91,200,134
Ensembl chr 3:91,191,837...91,200,134
JBrowse link
DNA replication factor A complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC095390.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:51,965,417...51,965,779 JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor colocalizes_with ISO (PMID:24332808) RGD PMID:24332808 NCBI chr 2:205,662,633...205,670,514
Ensembl chr 2:205,662,588...205,670,511
JBrowse link
G Cdc5l cell division cycle 5-like colocalizes_with ISO
ISS
(PMID:24332808)
GO_REF:0000024
RGD
UniProt
PMID:24332808 GO_REF:0000024 NCBI chr 9:17,949,764...17,988,514
Ensembl chr 9:17,949,764...17,988,509
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease colocalizes_with ISO (PMID:7700386) RGD PMID:7700386 NCBI chr 9:50,928,847...50,970,962
Ensembl chr 9:50,925,619...50,970,955
JBrowse link
G Helb DNA helicase B colocalizes_with ISO (PMID:26774285) RGD PMID:26774285 NCBI chr 7:64,860,641...64,888,146
Ensembl chr 7:64,860,666...64,887,448
JBrowse link
G LOC100362927 replication protein A3-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:51,965,390...51,965,816 JBrowse link
G Plrg1 pleiotropic regulator 1 colocalizes_with ISO
IBA
ISS
(PMID:24332808)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24332808, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:182,040,338...182,056,669
Ensembl chr 2:182,040,318...182,056,673
JBrowse link
G Prpf19 pre-mRNA processing factor 19 colocalizes_with ISO
ISS
(PMID:24332808)
GO_REF:0000024
RGD
UniProt
PMID:24332808 GO_REF:0000024 NCBI chr 1:226,947,065...226,958,147
Ensembl chr 1:226,947,105...226,958,144
JBrowse link
G Rpa1 replication protein A1 IDA
IBA
ISO
PMID:21873635
UniProtKB:P15927 (PMID:11927569), (PMID:16135809), (PMID:27723717), (PMID:27723720)
RGD PMID:11927569, PMID:16135809, PMID:27723717, PMID:27723720, PMID:8463251, PMID:21873635, PMID:7503737 RGD:2307012, RGD:13792537, RGD:2307013 NCBI chr10:62,140,419...62,191,518
Ensembl chr10:62,140,419...62,191,512
JBrowse link
G Rpa2 replication protein A2 IDA
IBA
ISO
PMID:21873635
UniProtKB:P27694 (PMID:11927569), (PMID:16135809), (PMID:2406247), (PMID:27723717), (PMID:27723720)
RGD PMID:2406247, PMID:11927569, PMID:16135809, PMID:27723717, PMID:27723720, PMID:8463251, PMID:21873635, PMID:7503737 RGD:2307012, RGD:13792537, RGD:2307013 NCBI chr 5:150,957,041...150,967,597
Ensembl chr 5:150,957,001...150,968,269
JBrowse link
G Rpa3 replication protein A3 IDA
IBA
ISO
PMID:21873635
(PMID:11927569)
RGD PMID:11927569, PMID:7503737, PMID:21873635 RGD:2307013, RGD:13792537 NCBI chr 4:34,279,320...34,282,351
Ensembl chr 4:34,279,320...34,282,351
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 colocalizes_with ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:19793862), (PMID:19793863)
UniProt
RGD
PMID:19793862, PMID:19793863, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:79,943,775...79,990,230
Ensembl chr 9:79,944,132...79,990,229
JBrowse link
G Tonsl tonsoku-like, DNA repair protein colocalizes_with ISO
ISS
(PMID:21055983)
GO_REF:0000024
RGD
UniProt
PMID:21055983 GO_REF:0000024 NCBI chr 7:117,688,397...117,703,139
Ensembl chr 7:117,688,397...117,703,094
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor colocalizes_with ISO (PMID:7700386) RGD PMID:7700386 NCBI chr 5:61,749,767...61,793,641
Ensembl chr 5:61,749,767...61,792,928
JBrowse link
DNA replication preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:86,328,785...86,354,099
Ensembl chr11:86,329,012...86,358,453
JBrowse link
G Orc3 origin recognition complex, subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:50,019,159...50,075,533
Ensembl chr 5:50,020,815...50,075,454
JBrowse link
GINS complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins1 GINS complex subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:146,695,366...146,716,787
Ensembl chr 3:146,695,344...146,716,816
JBrowse link
G Gins2 GINS complex subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:54,151,048...54,163,701
Ensembl chr19:54,151,048...54,163,608
JBrowse link
G Gins4 GINS complex subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:73,584,412...73,596,808
Ensembl chr16:73,584,521...73,596,793
JBrowse link
nuclear nucleosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpa centromere protein A ISO (PMID:27499292) RGD PMID:27499292 NCBI chr 6:27,072,259...27,080,863
Ensembl chr 6:27,072,166...27,080,856
JBrowse link
G H1f4 H1.4 linker histone, cluster member IDA PMID:9109385 CAFA PMID:9109385 RGD:12793017 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H2afb3 H2A histone family, member B3 ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:88,602,135...88,602,485
Ensembl chr  X:88,602,135...88,602,485
JBrowse link
G H2bc1 H2B clustered histone 1 ISO (MGI:MGI:5897488|PMID:28366643) RGD PMID:28366643 MGI:MGI:5897488 NCBI chr17:43,423,111...43,423,580
Ensembl chr17:43,423,111...43,423,580
JBrowse link
G H3c1 H3 clustered histone 1 ISO (PMID:20498094) RGD PMID:20498094 NCBI chr17:43,616,206...43,616,735
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G H3f3a H3 histone family member 3A ISO (PMID:19633671) RGD PMID:19633671 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO (PMID:19633671) RGD PMID:19633671 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G H3f4 H3.4 histone ISO (PMID:20498094) RGD PMID:20498094 NCBI chr10:45,304,696...45,305,106 JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 ISO (PMID:20498094) RGD PMID:20498094 NCBI chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
JBrowse link
G Hist1h3b histone cluster 1, H3b ISO (PMID:20498094) RGD PMID:20498094 NCBI chr17:44,760,023...44,764,058
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B ISO (PMID:20498094) RGD PMID:20498094 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m ISO (PMID:20498094) RGD PMID:20498094 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h4 histone cluster 2, H4 ISO (PMID:20498094) RGD PMID:20498094 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A ISO (PMID:20498094) RGD PMID:20498094 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Irf4 interferon regulatory factor 4 ISO (MGI:MGI:3615721|PMID:16428437) RGD PMID:16428437 MGI:MGI:3615721 NCBI chr17:34,886,746...34,905,191
Ensembl chr17:34,886,739...34,905,117
JBrowse link
G LOC100912290 histone H4-like ISO (PMID:20498094) RGD PMID:20498094 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC102548682 histone H4-like ISO (PMID:20498094) RGD PMID:20498094 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102549173 histone H3.2-like ISO (PMID:20819935) RGD PMID:20819935 NCBI chr17:43,626,081...43,626,568
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102551184 histone H4-like ISO (PMID:20498094) RGD PMID:20498094 NCBI chr17:43,770,198...43,821,579 JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 ISO (PMID:20498094) RGD PMID:20498094 NCBI chr17:43,794,397...43,795,493 JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISO
ISS
(PMID:20871592)
GO_REF:0000024
RGD
UniProt
PMID:20871592 GO_REF:0000024 NCBI chr15:36,918,843...36,946,712
Ensembl chr15:36,918,843...36,946,708
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 ISO (PMID:20498094) RGD PMID:20498094 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
G Tcf3 transcription factor 3 ISO (MGI:MGI:3615721|PMID:16428437) RGD PMID:16428437 MGI:MGI:3615721 NCBI chr 7:12,146,642...12,168,400
Ensembl chr 7:12,144,162...12,168,410
JBrowse link
G Tnp1 transition protein 1 ISO
ISS
(MGI:MGI:5897488|PMID:28366643)
GO_REF:0000024
RGD
UniProt
PMID:28366643 GO_REF:0000024, MGI:MGI:5897488 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446
JBrowse link
G Tnp2 transition protein 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5897488|PMID:28366643)
Ensembl
UniProt
RGD
PMID:28366643 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5897488 NCBI chr10:4,953,898...4,954,626
Ensembl chr10:4,953,879...4,954,624
JBrowse link
nuclear pre-replicative complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:86,328,785...86,354,099
Ensembl chr11:86,329,012...86,358,453
JBrowse link
G Orc3 origin recognition complex, subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:50,019,159...50,075,533
Ensembl chr 5:50,020,815...50,075,454
JBrowse link
G Wdr18 WD repeat domain 18 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:12,561,318...12,569,120
Ensembl chr 7:12,561,324...12,569,143
JBrowse link
nuclear telomere cap complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor ISO
IBA
(MGI:MGI:3829120|PMID:18185984)
PMID:21873635
(PMID:16880378)
RGD PMID:16880378, PMID:18185984, PMID:21873635 MGI:MGI:3829120, RGD:13792537 NCBI chr19:37,665,289...37,668,043
Ensembl chr19:37,665,296...37,667,987
JBrowse link
G Pot1 protection of telomeres 1 ISO
IBA
(PMID:16880378)
PMID:21873635
(MGI:MGI:3692019|PMID:17053789)
RGD PMID:16880378, PMID:17053789, PMID:21873635 MGI:MGI:3692019, RGD:13792537 NCBI chr 4:51,888,632...51,946,764
Ensembl chr 4:51,888,634...51,946,715
JBrowse link
G Pot1b protection of telomeres 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:7,845,697...7,902,270
Ensembl chr 9:7,845,845...7,891,514
JBrowse link
G Terf1 telomeric repeat binding factor 1 ISO
IBA
(PMID:16880378)
PMID:21873635
(MGI:MGI:77658|PMID:7502076)
RGD PMID:7502076, PMID:16880378, PMID:21873635 MGI:MGI:77658, RGD:13792537 NCBI chr 5:2,853,455...2,882,731
Ensembl chr 5:2,853,459...2,882,668
JBrowse link
G Terf2 telomeric repeat binding factor 2 ISO (PMID:15181449), (PMID:16880378) RGD PMID:15181449, PMID:16880378 NCBI chr19:39,271,992...39,301,506
Ensembl chr19:39,272,499...39,300,893
JBrowse link
G Tinf2 TERF1 interacting nuclear factor 2 ISO (PMID:16880378) RGD PMID:16880378 NCBI chr15:34,358,697...34,365,085
Ensembl chr15:34,360,974...34,364,081
JBrowse link
nucleosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012583.2 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:198,418,691...198,424,443 JBrowse link
G AABR07022134.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr13:109,490,362...109,490,772 JBrowse link
G AABR07027811.2 IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr17:44,760,056...44,760,466 JBrowse link
G AABR07040686.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr  X:107,584,653...107,585,312 JBrowse link
G AABR07044065.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr19:54,872,353...54,872,969 JBrowse link
G AABR07062859.1 IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 6:11,859,630...11,860,001 JBrowse link
G AC119603.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:157,854,667...157,855,077 JBrowse link
G Glyr1 glyoxylate reductase 1 homolog ISO
ISS
(PMID:23260659)
GO_REF:0000024
RGD
UniProt
PMID:23260659 GO_REF:0000024 NCBI chr10:10,725,830...10,759,471
Ensembl chr10:10,725,819...10,761,279
JBrowse link
G H1f0 H1 histone family, member 0 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H1f1 H1.1 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,614,101...43,614,844
Ensembl chr17:43,614,101...43,614,844
JBrowse link
G H1f10 H1.10 linker histone IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:119,889,016...119,892,661
Ensembl chr 4:119,889,371...119,889,949
JBrowse link
G H1f2 H1.2 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f5 H1.5 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H1f6 H1.6 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,675,190...43,675,934
Ensembl chr17:43,675,190...43,675,934
JBrowse link
G H1f8 H1.8 linker histone IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G H2ac1 H2A clustered histone 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,422,454...43,422,846
Ensembl chr17:43,422,454...43,422,846
JBrowse link
G H2ac12 H2A clustered histone 12 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,527,990...44,528,557
Ensembl chr17:44,528,125...44,528,511
JBrowse link
G H2ac20 H2A clustered histone 20 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:198,360,271...198,360,735
Ensembl chr 2:198,360,301...198,360,678
JBrowse link
G H2ac21 H2A clustered histone 21 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:198,359,754...198,360,146
Ensembl chr 2:198,359,754...198,360,146
JBrowse link
G H2aj H2A.J histone IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:170,766,900...170,767,384
Ensembl chr 4:170,766,900...170,767,382
JBrowse link
G H2ax H2A.X variant histone IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:48,665,652...48,666,981
Ensembl chr 8:48,665,652...48,666,981
JBrowse link
G H2az1 H2A.Z variant histone 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:243,105,224...243,107,333
Ensembl chr 2:243,105,674...243,106,956
JBrowse link
G H2az2 H2A.Z variant histone 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:86,687,782...86,706,639
Ensembl chr14:86,687,782...86,706,626
JBrowse link
G H2bc1 H2B clustered histone 1 ISO
ISS
(PMID:24699735)
(MGI:MGI:3702345|PMID:17261847), (MGI:MGI:5502464|PMID:23884607)
GO_REF:0000024
RGD
UniProt
PMID:17261847, PMID:23884607, PMID:24699735 GO_REF:0000024, MGI:MGI:3702345, MGI:MGI:5502464 NCBI chr17:43,423,111...43,423,580
Ensembl chr17:43,423,111...43,423,580
JBrowse link
G H2bc12 H2B clustered histone 12 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,527,421...44,527,801
Ensembl chr17:44,527,421...44,527,801
JBrowse link
G H2bc9 H2B clustered histone 9 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,519,815...44,520,269
Ensembl chr17:44,519,860...44,520,240
JBrowse link
G H2bu1 H2B.U histone 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:45,296,638...45,297,385
Ensembl chr10:45,296,638...45,297,385
JBrowse link
G H3c1 H3 clustered histone 1 ISO
IEA
(PMID:21636898), (PMID:24699735), (PMID:25615412)
GO_REF:0000043
RGD
UniProt
PMID:21636898, PMID:24699735, PMID:25615412 GO_REF:0000043 NCBI chr17:43,616,206...43,616,735
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G H3c13 H3 clustered histone 13 ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr17:43,776,018...43,776,779
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G H3f3a H3 histone family member 3A ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G H3f4 H3.4 histone ISO (PMID:25615412) RGD PMID:25615412 NCBI chr10:45,304,696...45,305,106 JBrowse link
G H4f3 H1.3 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 ISO (PMID:12920187) RGD PMID:12920187 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Hist1h2ac histone cluster 1 H2A family member C IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,520,484...44,521,142
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2af histone cluster 1 H2A family member F IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,627,237...43,627,629
Ensembl chr17:43,627,237...43,627,629
JBrowse link
G Hist1h2ah histone cluster 1 H2A family member H IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,632,354...43,632,851
Ensembl chr17:44,747,796...44,748,188
Ensembl chr17:44,747,796...44,748,188
JBrowse link
G Hist1h2ai histone cluster 1, H2ai IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,758,412...44,759,675
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 ISO
IEA
(PMID:21636898), (PMID:24699735), (PMID:25615412)
GO_REF:0000043
RGD
UniProt
PMID:21636898, PMID:24699735, PMID:25615412 GO_REF:0000043 NCBI chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
JBrowse link
G hist1h2ail2 histone cluster 1, H2ai-like2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,794,087...44,794,563
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2ak histone cluster 1, H2ak IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,840,990...44,841,382
Ensembl chr17:44,840,990...44,841,382
JBrowse link
G Hist1h2an histone cluster 1, H2an IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,779,174...43,779,775
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2ao histone cluster 1, H2ao IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,744,534...44,744,931
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist1h2bc histone cluster 1, H2bc IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,736,184...44,738,393
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G Hist1h2bd histone cluster 1 H2B family member D IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,833,924...44,834,305
Ensembl chr17:44,833,924...44,834,305
JBrowse link
G Hist1h2bg histone cluster 1, H2bg IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,817,316...43,817,717
Ensembl chr17:43,817,378...43,817,720
JBrowse link
G Hist1h2bl histone cluster 1 H2B family member l IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,748,445...44,748,910
Ensembl chr17:44,748,482...44,748,862
JBrowse link
G Hist1h2bo histone cluster 1 H2B family member o IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,756,557...44,758,170
Ensembl chr17:44,756,555...44,793,927
JBrowse link
G Hist1h2bq histone cluster 1 H2B family member Q IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,679,925...43,689,311
Ensembl chr17:43,679,925...43,689,311
JBrowse link
G Hist1h3b histone cluster 1, H3b ISO
IEA
(PMID:21636898), (PMID:24699735), (PMID:25615412)
GO_REF:0000043
RGD
UniProt
PMID:21636898, PMID:24699735, PMID:25615412 GO_REF:0000043 NCBI chr17:44,760,023...44,764,058
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B ISO (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m ISO (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:21636898, PMID:24699735, PMID:25615412 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h2aa2 histone cluster 2 H2A family member A2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:198,381,678...198,382,247
Ensembl chr 2:198,388,809...198,389,201
Ensembl chr 2:198,388,809...198,389,201
JBrowse link
G Hist2h2aa3 histone cluster 2 H2A family member A3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:198,388,766...198,389,293
Ensembl chr 2:198,388,809...198,389,201
Ensembl chr 2:198,388,809...198,389,201
JBrowse link
G Hist2h2be histone cluster 2 H2B family member E IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:198,360,837...198,363,399
Ensembl chr 2:198,360,998...198,361,378
JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr 2:198,390,024...198,418,075
Ensembl chr 2:198,417,619...198,418,029
JBrowse link
G Hist2h4 histone cluster 2, H4 ISO (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A ISO (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist3h2a histone cluster 3, H2a IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:45,297,603...45,299,155 JBrowse link
G Hist3h2ba histone cluster 3, H2ba IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:45,289,741...45,290,370
Ensembl chr10:45,289,741...45,290,370
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:156,581,732...156,609,059
Ensembl chr 5:156,581,732...156,609,059
JBrowse link
G Hypm huntingtin interacting protein M IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:13,989,401...13,989,955
Ensembl chr  X:13,989,401...13,989,955
JBrowse link
G Kat6a lysine acetyltransferase 6A IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:73,942,669...74,020,750
Ensembl chr16:73,943,455...74,023,005
JBrowse link
G Kat6b lysine acetyltransferase 6B IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,811,933...2,966,833
Ensembl chr15:2,813,537...2,966,576
JBrowse link
G Kdm1b lysine demethylase 1B ISO (PMID:23260659) RGD PMID:23260659 NCBI chr17:17,987,972...18,028,808
Ensembl chr17:17,987,972...18,028,808
JBrowse link
G LOC100363125 rCG42854-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:13,991,860...13,992,606
Ensembl chr  X:13,992,064...13,992,429
JBrowse link
G LOC100364835 histone cluster 1, H2bd-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,764,654...43,765,101
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC100365043 histone cluster 1, H2bd-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,808,617...43,817,817
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC100910200 histone H2B type 1-C/E/G-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,792,982...44,793,896
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC100910554 histone H2A type 1-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,738,552...44,739,195
Ensembl chr17:44,738,643...44,739,035
JBrowse link
G LOC100912290 histone H4-like ISO (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC102548682 histone H4-like ISO (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102549061 histone H2B type 1-N-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,627,872...43,628,518
Ensembl chr17:43,627,930...43,628,310
JBrowse link
G LOC102551184 histone H4-like ISO (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,770,198...43,821,579 JBrowse link
G LOC103690002 histone H2A.J IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:170,148,955...170,149,479
Ensembl chr 4:170,149,029...170,149,418
JBrowse link
G LOC103690190 histone H2A type 1-E IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:44,747,686...44,748,229
Ensembl chr17:44,747,796...44,748,188
Ensembl chr17:44,747,796...44,748,188
JBrowse link
G LOC103693372 histone H3.3-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:19,575,474...19,577,887
Ensembl chr15:19,575,513...19,575,914
JBrowse link
G LOC680063 similar to histone 2a IEA GO_REF:0000043 UniProt GO_REF:0000043
G LOC684444 similar to HIStone family member (his-41) IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:29,247,748...29,248,259
Ensembl chr 2:29,247,803...29,248,174
JBrowse link
G LOC684773 similar to histone 2a IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,777,353...43,777,827
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G LOC684797 similar to Histone H2B 291B IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:43,778,481...43,778,990
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 ISO (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,794,397...43,795,493 JBrowse link
G LOC690126 hypothetical protein LOC690126 ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr 2:198,379,864...198,381,026
Ensembl chr 2:198,380,426...198,380,836
JBrowse link
G Macroh2a1 macroH2A.1 histone IDA
IEA
GO_REF:0000104 UniProt PMID:1529340 GO_REF:0000104, RGD:728409 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
G Prm1 protamine 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,945,995...4,946,241
Ensembl chr10:4,945,911...4,946,397
JBrowse link
G Prm2 protamine 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,950,484...4,950,920
Ensembl chr10:4,950,484...4,950,920
JBrowse link
G Prm3 protamine 3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,951,557...4,952,071
Ensembl chr10:4,951,557...4,952,071
JBrowse link
G RGD1562306 similar to H2A histone family, member Z IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:11,859,622...11,860,016 JBrowse link
G RGD1562378 histone H4 variant H4-v.1 ISO (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
G RGD1564447 similar to Zgc:56193 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:46,951,420...46,951,862
Ensembl chr 9:46,951,437...46,951,847
JBrowse link
G RGD1564548 similar to H3 histone, family 3B IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:109,411,189...109,412,189
Ensembl chr 7:109,411,475...109,411,885
JBrowse link
G Shprh SNF2 histone linker PHD RING helicase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,240,139...5,313,064
Ensembl chr 1:5,240,180...5,313,054
JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 ISO (MGI:MGI:3528541|PMID:15632077) RGD PMID:15632077 MGI:MGI:3528541 NCBI chr 2:4,095,126...4,195,819
Ensembl chr 2:4,095,129...4,195,810
JBrowse link
G Sphk2 sphingosine kinase 2 ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
G Tnp1 transition protein 1 ISO
IBA
ISS
(PMID:12743712)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:12743712, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446
JBrowse link
replisome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Donson DNA replication fork stabilization factor DONSON ISO (PMID:28191891) RGD PMID:28191891 NCBI chr11:31,834,608...31,847,751
Ensembl chr11:31,837,839...31,847,490
JBrowse link
shelterin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor ISO
IBA
(PMID:15383534), (PMID:21852327), (PMID:23685356)
PMID:21873635
RGD PMID:15383534, PMID:21852327, PMID:23685356, PMID:21873635 RGD:13792537 NCBI chr19:37,665,289...37,668,043
Ensembl chr19:37,665,296...37,667,987
JBrowse link
G Pot1 protection of telomeres 1 ISO (PMID:15383534), (PMID:21852327), (PMID:23685356) RGD PMID:15383534, PMID:21852327, PMID:23685356 NCBI chr 4:51,888,632...51,946,764
Ensembl chr 4:51,888,634...51,946,715
JBrowse link
G Terb1 telomere repeat binding bouquet formation protein 1 colocalizes_with ISO
IBA
(MGI:MGI:5704279|PMID:26548954)
PMID:21873635
RGD PMID:26548954, PMID:21873635 MGI:MGI:5704279, RGD:13792537 NCBI chr19:682,013...736,358
Ensembl chr19:682,065...736,315
JBrowse link
G Terf1 telomeric repeat binding factor 1 ISO (PMID:15383534), (PMID:21852327), (PMID:23685356) RGD PMID:15383534, PMID:21852327, PMID:23685356 NCBI chr 5:2,853,455...2,882,731
Ensembl chr 5:2,853,459...2,882,668
JBrowse link
G Terf2 telomeric repeat binding factor 2 ISO
IBA
(PMID:15383534), (PMID:21852327), (PMID:23685356)
PMID:21873635
RGD PMID:15383534, PMID:21852327, PMID:23685356, PMID:21873635 RGD:13792537 NCBI chr19:39,271,992...39,301,506
Ensembl chr19:39,272,499...39,300,893
JBrowse link
G Terf2ip TERF2 interacting protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:44,231,317...44,238,406
Ensembl chr19:44,231,251...44,238,404
JBrowse link
G Tinf2 TERF1 interacting nuclear factor 2 ISO
IBA
(PMID:15383534), (PMID:21852327), (PMID:23685356)
PMID:21873635
RGD PMID:15383534, PMID:21852327, PMID:23685356, PMID:21873635 RGD:13792537 NCBI chr15:34,358,697...34,365,085
Ensembl chr15:34,360,974...34,364,081
JBrowse link
transcription preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:69,089,955...69,094,678
Ensembl chr16:69,089,955...69,094,680
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:25,037,668...25,068,380
Ensembl chr18:25,037,625...25,068,389
JBrowse link
G Esr1 estrogen receptor 1 IEA
ISO
GO_REF:0000107
(PMID:9841876)
Ensembl
RGD
PMID:9841876 GO_REF:0000107 NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796
JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 ISO
IEA
(PMID:8224850)
GO_REF:0000107
RGD
Ensembl
PMID:8224850 GO_REF:0000107 NCBI chr 6:115,321,110...115,352,659
Ensembl chr 6:115,320,467...115,352,681
JBrowse link
G Gtf2b general transcription factor IIB IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:9841876)
Ensembl
RGD
PMID:9841876, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:248,709,433...248,727,741
Ensembl chr 2:248,715,281...248,727,741
JBrowse link
G Gtf2e1 general transcription factor IIE subunit 1 ISO (PMID:9841876) RGD PMID:9841876 NCBI chr11:66,078,786...66,111,394
Ensembl chr11:66,078,820...66,110,848
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IEA
ISO
GO_REF:0000107
(PMID:9841876)
Ensembl
RGD
PMID:9841876 GO_REF:0000107 NCBI chr15:57,942,057...58,068,892
Ensembl chr15:57,942,059...58,068,892
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr12:37,427,556...37,444,027
Ensembl chr12:37,427,546...37,444,282
JBrowse link
G Tbp TATA box binding protein ISO (PMID:9841876) RGD PMID:9841876 NCBI chr 1:57,491,381...57,509,335
Ensembl chr 1:57,491,643...57,508,449
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20609
    protein-containing complex 6093
      protein-DNA complex 205
        DNA recombinase complex 2
        DNA replication preinitiation complex + 6
        HU-DNA complex 0
        IHF-DNA complex 0
        SeqA-DNA complex 0
        enhanceosome 0
        invertasome 0
        nucleosome + 104
        nucleotide-excision repair, preincision complex 0
        pre-replicative complex + 3
        primosome complex + 0
        protein-DNA ISRE complex 0
        replisome + 23
        retroviral intasome 0
        telomere cap complex + 11
        telomere-telomerase complex 0
        transcription preinitiation complex 9
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.