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ONTOLOGY REPORT - ANNOTATIONS


Term:collagen metabolic process
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Accession:GO:0032963 term browser browse the term
Definition:The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).
Synonyms:exact_synonym: collagen metabolism


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collagen metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain ISO MGI:1856327 (MGI:5468210|PMID:22910579) RGD PMID:22910579 MGI:5468210 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEA
ISO
GO_REF:0000107
(MGI:3772289|PMID:18037992)
Ensembl
RGD
PMID:18037992 GO_REF:0000107, MGI:3772289 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Id1 inhibitor of DNA binding 1, HLH protein ISO MGI:2679939 (MGI:3759000|PMID:17717145) RGD PMID:17717145 MGI:3759000 NCBI chr 3:148,214,623...148,216,715
Ensembl chr 3:148,215,540...148,216,718
JBrowse link
G P2rx7 purinergic receptor P2X 7 ISO MGI:2386080 (MGI:3796378|PMID:16969386) RGD PMID:16969386 MGI:3796378 NCBI chr12:39,353,613...39,396,042
Ensembl chr12:39,353,613...39,396,042
JBrowse link
G P3h1 prolyl 3-hydroxylase 1 IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 5:138,279,597...138,294,280
Ensembl chr 5:138,279,506...138,294,262
JBrowse link
G P3h2 prolyl 3-hydroxylase 2 IDA
IBA
ISS
ISO
IEA
PMID:21757687
PMID:21873635
GO_REF:0000024
(PMID:18487197)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:18487197, PMID:21757687, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:8553392, RGD:13792537 NCBI chr11:78,028,885...78,169,746
Ensembl chr11:78,029,038...78,169,648
JBrowse link
G P3h3 prolyl 3-hydroxylase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,359,331...157,375,186
Ensembl chr 4:157,359,332...157,372,861
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 ISO (MGI:5804716|PMID:27435297) RGD PMID:27435297 MGI:5804716 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
G Prkcd protein kinase C, delta IMP RGD PMID:17728702 RGD:1642520 NCBI chr16:6,655,131...6,675,746
Ensembl chr16:6,655,120...6,675,746
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 IEA
ISO
GO_REF:0000107
MGI:1856877 (MGI:5468210|PMID:22910579)
Ensembl
RGD
PMID:22910579 GO_REF:0000107, MGI:5468210 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO RNAcentral:URS000039ED8D_10090 (MGI:5688831|PMID:22960625) RGD PMID:22960625 MGI:5688831 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
G Tns2 tensin 2 ISO MGI:2447990 (MGI:3761416|PMID:10823724) RGD PMID:10823724 MGI:3761416 NCBI chr 7:143,702,623...143,720,995
Ensembl chr 7:143,707,237...143,720,595
JBrowse link
G Tnxb tenascin XB ISO (PMID:15102077) RGD PMID:15102077
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog IEA
ISO
GO_REF:0000107
MGI:3699244|MGI:5816979 (MGI:5804716|PMID:27435297)
(PMID:27435297)
Ensembl
RGD
PMID:27435297 GO_REF:0000107, MGI:5804716 NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated ISO (PMID:27435297)
MGI:3699244|MGI:5770088 (MGI:5804716|PMID:27435297)
RGD PMID:27435297 MGI:5804716 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
collagen biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts3 ADAM metallopeptidase with thrombospondin type 1, motif 3 ISO (PMID:11408482) RGD PMID:11408482 NCBI chr14:19,866,278...20,072,896
Ensembl chr14:19,866,408...20,070,994
JBrowse link
G Arg1 arginase 1 IMP RGD PMID:20107769 RGD:4143276 NCBI chr 1:21,525,421...21,537,872
Ensembl chr 1:21,525,421...21,537,863
JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO (PMID:15095409) RGD PMID:15095409 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col5a1 collagen type V alpha 1 chain IEA
ISO
GO_REF:0000107
(PMID:11278977), (PMID:15095409)
Ensembl
RGD
PMID:11278977, PMID:15095409 GO_REF:0000107 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G P3h3 prolyl 3-hydroxylase 3 ISO (MGI:5888787|PMID:28115524) RGD PMID:28115524 MGI:5888787 NCBI chr 4:157,359,331...157,375,186
Ensembl chr 4:157,359,332...157,372,861
JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 ISS
ISO
GO_REF:0000024
(MGI:5779580|PMID:27119146)
UniProt
RGD
PMID:27119146 GO_REF:0000024, MGI:5779580 NCBI chr10:88,318,231...88,325,326
Ensembl chr10:88,318,817...88,325,326
JBrowse link
G Rcn3 reticulocalbin 3 IEA
ISO
ISS
GO_REF:0000107
(PMID:28939891)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:28939891 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:101,076,971...101,086,198
Ensembl chr 1:101,076,898...101,086,198
JBrowse link
G Serpinh1 serpin family H member 1 IEA
ISO
GO_REF:0000107
MGI:2385994 (MGI:1890100|PMID:10995453)
Ensembl
RGD
PMID:10995453 GO_REF:0000107, MGI:1890100 NCBI chr 1:164,301,010...164,308,306
Ensembl chr 1:164,301,010...164,308,317
JBrowse link
G Tram2 translocation associated membrane protein 2 ISO (PMID:14749390) RGD PMID:14749390 NCBI chr 9:27,117,861...27,192,166
Ensembl chr 9:27,117,869...27,192,135
JBrowse link
collagen catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07069011.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:5,199,426...5,202,360 JBrowse link
G Adam15 ADAM metallopeptidase domain 15 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:188,661,831...188,672,337
Ensembl chr 2:188,661,699...188,672,247
JBrowse link
G Ctsb cathepsin B ISO
IEA
(PMID:22952693)
GO_REF:0000107
RGD
Ensembl
PMID:22952693 GO_REF:0000107 NCBI chr15:46,316,741...46,337,613
Ensembl chr15:46,316,741...46,337,612
JBrowse link
G Ctsk cathepsin K ISO (PMID:19834056), (PMID:22952693)
MGI:2182131 (MGI:4397742|PMID:19834056)
RGD PMID:19834056, PMID:22952693 MGI:4397742 NCBI chr 2:196,655,469...196,666,447
Ensembl chr 2:196,655,469...196,666,446
JBrowse link
G Ctsl cathepsin L ISO
ISS
(PMID:10716919), (PMID:22952693)
(MGI:6437015|PMID:10716919)
GO_REF:0000024
RGD
UniProt
PMID:10716919, PMID:22952693 GO_REF:0000024, MGI:6437015 NCBI chr17:1,873,105...1,879,266
Ensembl chr17:1,872,848...1,879,279
JBrowse link
G Ctss cathepsin S ISO
IEA
(PMID:22952693)
GO_REF:0000107
RGD
Ensembl
PMID:22952693 GO_REF:0000107 NCBI chr 2:197,655,780...197,679,768
Ensembl chr 2:197,655,786...197,679,458
JBrowse link
G LOC103694864 matrix metalloproteinase-28-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC103694874 stromelysin-3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Mmp1 matrix metallopeptidase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:5,703,206...5,723,593
Ensembl chr 8:5,703,206...5,723,591
JBrowse link
G Mmp10 matrix metallopeptidase 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,734,348...5,742,243
Ensembl chr 8:5,734,348...5,742,243
JBrowse link
G Mmp11 matrix metallopeptidase 11 IBA
ISO
PMID:21873635
(MGI:3822602|PMID:18622425)
RGD PMID:18622425, PMID:21873635 MGI:3822602, RGD:13792537 NCBI chr20:13,670,051...13,678,834
Ensembl chr20:13,670,066...13,678,089
JBrowse link
G Mmp12 matrix metallopeptidase 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,594,717...5,616,494
Ensembl chr 8:5,606,592...5,616,493
JBrowse link
G Mmp13 matrix metallopeptidase 13 IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:3513736|PMID:15563592), (MGI:3771509|PMID:17987127)
PMID:21873635
(PMID:8576151), (PMID:9065415)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:8576151, PMID:9065415, PMID:15563592, PMID:17987127, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:3513736, MGI:3771509, RGD:13792537 NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
JBrowse link
G Mmp14 matrix metallopeptidase 14 IBA
ISO
PMID:21873635
MGI:1276107 (MGI:3771253|PMID:18022611)
RGD PMID:18022611, PMID:21873635 MGI:3771253, RGD:13792537 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
JBrowse link
G Mmp15 matrix metallopeptidase 15 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:10,079,881...10,101,380
Ensembl chr19:10,079,765...10,101,451
JBrowse link
G Mmp16 matrix metallopeptidase 16 IEA
ISO
IBA
GO_REF:0000107
MGI:2445723 (MGI:3771253|PMID:18022611)
PMID:21873635
Ensembl
RGD
PMID:18022611, PMID:21873635 GO_REF:0000107, MGI:3771253, RGD:13792537 NCBI chr 5:31,568,344...31,818,368
Ensembl chr 5:31,568,419...31,810,484
JBrowse link
G Mmp17 matrix metallopeptidase 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:30,353,874...30,356,526
NCBI chr12:30,701,900...30,728,683
Ensembl chr12:30,702,571...30,728,655
JBrowse link
G Mmp19 matrix metallopeptidase 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:3,216,392...3,224,202
Ensembl chr 7:3,216,497...3,224,201
JBrowse link
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,622,657...5,688,762
Ensembl chr 8:5,623,198...5,631,014
JBrowse link
G Mmp2 matrix metallopeptidase 2 IDA
ISO
IBA
IEA
MGI:2386252 (MGI:3710444|PMID:17440987)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:17440987, PMID:22410640, PMID:21873635 GO_REF:0000107, MGI:3710444, RGD:7207278, RGD:13792537 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Mmp20 matrix metallopeptidase 20 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,823,147...5,875,555
Ensembl chr 8:5,833,359...5,875,232
JBrowse link
G Mmp21 matrix metallopeptidase 21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:205,745,119...205,750,786
Ensembl chr 1:205,745,119...205,750,786
JBrowse link
G Mmp23 matrix metallopeptidase 23 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:173,078,811...173,082,834
Ensembl chr 5:173,078,590...173,081,839
JBrowse link
G Mmp24 matrix metallopeptidase 24 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:151,307,309...151,355,401
Ensembl chr 3:151,310,598...151,355,401
JBrowse link
G Mmp27 matrix metallopeptidase 27 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,790,019...5,799,938
Ensembl chr 8:5,790,034...5,800,342
JBrowse link
G Mmp28 matrix metallopeptidase 28 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:70,660,691...70,681,672
Ensembl chr10:70,660,691...70,681,672
JBrowse link
G Mmp3 matrix metallopeptidase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,676,608...5,698,579
Ensembl chr 8:5,676,665...5,698,579
JBrowse link
G Mmp7 matrix metallopeptidase 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,893,253...5,900,965
Ensembl chr 8:5,893,249...5,901,049
JBrowse link
G Mmp8 matrix metallopeptidase 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,768,808...5,777,741
Ensembl chr 8:5,768,811...5,778,702
JBrowse link
G Mmp9 matrix metallopeptidase 9 IDA
ISO
IEA
IBA
(MGI:1096214|PMID:9291580)
GO_REF:0000043
PMID:21873635
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:9291580, PMID:22410640, PMID:21873635 GO_REF:0000043, GO_REF:0000107, MGI:1096214, RGD:7207278, RGD:13792537 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Mrc2 mannose receptor, C type 2 IEA
ISO
GO_REF:0000107
(PMID:12972549)
Ensembl
RGD
PMID:12972549 GO_REF:0000107 NCBI chr10:93,520,272...93,581,599
Ensembl chr10:93,520,132...93,581,296
JBrowse link
G Pepd peptidase D IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:90,820,670...91,285,128 JBrowse link
G Prss2 protease, serine, 2 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:70,689,737...70,694,816
Ensembl chr 4:70,689,737...70,694,761
JBrowse link
negative regulation of collagen biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora2b adenosine A2B receptor IMP RGD PMID:9535419 RGD:2316149 NCBI chr10:48,569,563...48,586,366
Ensembl chr10:48,569,555...48,586,365
JBrowse link
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:21872885 RGD:7245949 NCBI chr20:4,363,152...4,366,079
Ensembl chr20:4,363,152...4,366,079
JBrowse link
G Cygb cytoglobin IDA RGD PMID:20719976 RGD:9685174 NCBI chr10:105,618,325...105,628,091
Ensembl chr10:105,618,326...105,628,091
JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IMP RGD PMID:25840911 RGD:12904676 NCBI chr 5:119,546,458...119,564,843
Ensembl chr 5:119,546,461...119,564,846
JBrowse link
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 IMP RGD PMID:15521018 RGD:15045602 NCBI chr 5:19,358,734...19,368,431
Ensembl chr 5:19,358,734...19,368,431
JBrowse link
G Emilin1 elastin microfibril interfacer 1 ISO (MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:5605894 NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 IMP RGD PMID:19204184 RGD:9685562 NCBI chr 5:167,951,564...167,966,011
Ensembl chr 5:167,952,728...167,966,009
JBrowse link
G Fn1 fibronectin 1 IMP RGD PMID:15980055 RGD:1625201 NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 IMP RGD PMID:26880260 RGD:13504840 NCBI chr 1:263,246,248...263,269,762
Ensembl chr 1:263,246,248...263,269,762
JBrowse link
G Il6 interleukin 6 ISO (PMID:12419823) RGD PMID:12419823 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Il6r interleukin 6 receptor ISO (PMID:12419823) RGD PMID:12419823 NCBI chr 2:189,196,180...189,255,987
Ensembl chr 2:189,205,701...189,254,628
JBrowse link
G Nppc natriuretic peptide C IDA RGD PMID:12746286 RGD:1580115 NCBI chr 9:93,731,436...93,735,636
Ensembl chr 9:93,731,436...93,735,636
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IMP RGD PMID:15980055 RGD:1625201 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta IMP RGD PMID:17346664 RGD:2324888 NCBI chr20:7,818,289...7,883,482
Ensembl chr20:7,818,289...7,885,333
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IMP RGD PMID:16202214 RGD:8553021 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IMP RGD PMID:22012077 RGD:9850086 NCBI chr 2:208,193,950...208,215,186
Ensembl chr 2:208,193,954...208,215,187
JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor 3 IMP RGD PMID:22012077 RGD:9850086 NCBI chr 7:139,232,263...139,254,668
Ensembl chr 7:139,232,251...139,254,551
JBrowse link
negative regulation of collagen catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C ISO (PMID:10545518) RGD PMID:10545518 NCBI chr 3:143,219,671...143,223,544
Ensembl chr 3:143,219,686...143,223,615
JBrowse link
positive regulation of collagen biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb2 arrestin, beta 2 IMP RGD PMID:28274926 RGD:13506828 NCBI chr10:57,040,252...57,048,045
Ensembl chr10:57,040,267...57,048,134
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO
ISS
IEA
(PMID:17720811)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:17720811 GO_REF:0000024, GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Cbx8 chromobox 8 IMP RGD PMID:23572236 RGD:9586727 NCBI chr10:108,148,073...108,150,511
Ensembl chr10:108,148,073...108,150,511
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IDA RGD PMID:8663511 RGD:8549527 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Ccn2 cellular communication network factor 2 IMP RGD PMID:19570811 RGD:2314490 NCBI chr 1:21,851,657...21,854,773
Ensembl chr 1:21,851,660...21,854,773
JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 ISO
ISS
(PMID:25310401)
GO_REF:0000024
RGD
UniProt
PMID:25310401 GO_REF:0000024 NCBI chr 3:80,892,433...80,933,283
Ensembl chr 3:80,892,435...80,933,283
JBrowse link
G Eng endoglin IMP RGD PMID:20156938 RGD:7257540 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Ep300 E1A binding protein p300 IMP RGD PMID:18292803 RGD:2312266 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G F2 coagulation factor II ISO
IEA
(PMID:9639571)
GO_REF:0000107
RGD
Ensembl
PMID:9639571 GO_REF:0000107 NCBI chr 3:80,529,468...80,542,993
Ensembl chr 3:80,529,428...80,543,031
JBrowse link
G F2r coagulation factor II (thrombin) receptor ISO
IEA
ISS
(PMID:9639571)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:9639571 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:26,118,760...26,135,340
Ensembl chr 2:26,118,760...26,135,340
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO (MGI:1335697|PMID:10208865) RGD PMID:10208865 MGI:1335697 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Il18 interleukin 18 IDA RGD PMID:20644901 RGD:4889158 NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
JBrowse link
G Itga2 integrin subunit alpha 2 IMP RGD PMID:10867645 RGD:2307406 NCBI chr 2:46,996,904...47,097,011
Ensembl chr 2:47,000,323...47,096,961
JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator ISO (PMID:21746880) RGD PMID:21746880 NCBI chr 8:65,611,570...65,632,706
Ensembl chr 8:65,611,570...65,632,706
JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 IMP RGD PMID:9607192 RGD:10412058 NCBI chr 6:21,203,502...21,600,441
Ensembl chr 6:21,203,502...21,600,451
JBrowse link
G Mkx mohawk homeobox ISO MGI:4461224 (MGI:4457966|PMID:20498044) RGD PMID:20498044 MGI:4457966 NCBI chr17:60,537,615...60,553,284
Ensembl chr17:60,537,935...60,549,750
JBrowse link
G Myb MYB proto-oncogene, transcription factor IMP RGD PMID:15534927 RGD:11532676 NCBI chr 1:16,658,178...16,690,135
Ensembl chr 1:16,659,442...16,687,817
JBrowse link
G Pdgfb platelet derived growth factor subunit B IMP RGD PMID:15358192 RGD:10449487 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IMP RGD PMID:15978205 RGD:2292205 NCBI chr18:56,364,586...56,406,381
Ensembl chr18:56,364,620...56,406,381
JBrowse link
G Prdx5 peroxiredoxin 5 ISO (PMID:15276323) RGD PMID:15276323 NCBI chr 1:222,164,462...222,167,447
Ensembl chr 1:222,164,462...222,167,447
JBrowse link
G Rgcc regulator of cell cycle ISO (PMID:19158077) RGD PMID:19158077 NCBI chr15:61,551,861...61,564,695
Ensembl chr15:61,551,861...61,564,695
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:4413438|PMID:18802027), (MGI:5294534|PMID:19362560) RGD PMID:18802027, PMID:19362560 MGI:4413438, MGI:5294534 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Serpinb7 serpin family B member 7 IMP RGD PMID:21945418 RGD:7207383 NCBI chr13:27,282,456...27,354,775
Ensembl chr13:27,312,498...27,354,052
JBrowse link
G Serpine1 serpin family E member 1 IMP RGD PMID:15828931 RGD:13208547 NCBI chr12:22,641,104...22,651,482
Ensembl chr12:22,641,104...22,651,482
JBrowse link
G Serpinf2 serpin family F member 2 ISO (PMID:17958745)
(MGI:4453296|PMID:18436805)
RGD PMID:17958745, PMID:18436805 MGI:4453296 NCBI chr10:62,264,247...62,272,353
Ensembl chr10:62,264,788...62,273,119
JBrowse link
G Suco SUN domain containing ossification factor IEA
ISO
ISS
GO_REF:0000107
(MGI:4452525|PMID:20440000)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20440000 GO_REF:0000024, GO_REF:0000107, MGI:4452525 NCBI chr13:79,736,485...79,801,133
Ensembl chr13:79,736,482...79,801,561
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IMP
ISO
ISS
(MGI:4820704|PMID:19734317)
RNAcentral:URS000024463E_9606 (PMID:11158066), (PMID:19734317), (PMID:22269326), (PMID:25310401)
GO_REF:0000024
RGD
UniProt
PMID:11158066, PMID:19734317, PMID:22269326, PMID:25310401, PMID:26923362 GO_REF:0000024, MGI:4820704, RGD:11073665 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb3 transforming growth factor, beta 3 ISO
ISS
(PMID:11158066)
GO_REF:0000024
RGD
AgBase
PMID:11158066 GO_REF:0000024 NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
JBrowse link
G Ucn urocortin IDA RGD PMID:11087261 RGD:1642796 NCBI chr 6:26,602,144...26,602,974
Ensembl chr 6:26,602,144...26,602,974
JBrowse link
G Uts2 urotensin 2 IDA RGD PMID:17184580, PMID:18475149 RGD:2306814, RGD:2306811 NCBI chr 5:168,078,748...168,084,133
Ensembl chr 5:168,078,748...168,084,145
JBrowse link
G Vim vimentin IEA
ISO
GO_REF:0000107
(PMID:21746880)
Ensembl
RGD
PMID:21746880 GO_REF:0000107 NCBI chr17:80,882,715...80,891,200
Ensembl chr17:80,882,666...80,891,212
JBrowse link
G Wnt4 Wnt family member 4 ISO
IEA
(PMID:17720811)
GO_REF:0000107
RGD
Ensembl
PMID:17720811 GO_REF:0000107 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
positive regulation of collagen catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase ISO MGI:2176236 (MGI:4397742|PMID:19834056) RGD PMID:19834056 MGI:4397742 NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
JBrowse link
G Vsir V-set immunoregulatory receptor ISO (PMID:20666777) RGD PMID:20666777 NCBI chr20:29,897,543...29,923,381
Ensembl chr20:29,897,594...29,919,998
JBrowse link
positive regulation of collagen metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Retn resistin IMP RGD PMID:20795947 RGD:7207234 NCBI chr12:2,201,909...2,203,649
Ensembl chr12:2,201,891...2,204,249
JBrowse link
regulation of collagen catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fap fibroblast activation protein, alpha ISO (PMID:10455171) RGD PMID:10455171 NCBI chr 3:48,467,781...48,536,242
Ensembl chr 3:48,467,781...48,536,235
JBrowse link
G Itgb1 integrin subunit beta 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:10455171)
Ensembl
UniProt
RGD
PMID:10455171 GO_REF:0000024, GO_REF:0000107 NCBI chr19:61,677,512...61,725,537
Ensembl chr19:61,677,542...61,725,535
JBrowse link
regulation of collagen metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:2135670 (MGI:4437389|PMID:20053668) RGD PMID:20053668 MGI:4437389 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Mfap4 microfibril associated protein 4 ISO (PMID:22355679) RGD PMID:22355679 NCBI chr10:47,765,463...47,768,484
Ensembl chr10:47,765,432...47,768,483
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      collagen metabolic process 113
        collagen biosynthetic process + 58
        collagen catabolic process + 38
        negative regulation of collagen metabolic process + 18
        positive regulation of collagen metabolic process + 35
        regulation of collagen metabolic process + 57
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.