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ONTOLOGY REPORT - ANNOTATIONS


Term:circadian regulation of gene expression
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Accession:GO:0032922 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours.
Synonyms:related_synonym: circadian regulation of protein expression;   diurnal variation of gene expression;   diurnal variation of protein expression


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circadian regulation of gene expression term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase ISO RGD PMID:12675911 RGD:2291861 NCBI chr14:21,052,574...21,448,569
Ensembl chr14:21,052,574...21,448,569
JBrowse link
G Ahr aryl-hydrocarbon receptor IDA (MGI:4820700|PMID:20106950) UniProt PMID:20106950 MGI:4820700 NCBI chr12:35,497,979...35,534,989
Ensembl chr12:35,497,974...35,535,038
JBrowse link
G Arntl aryl hydrocarbon receptor nuclear translocator-like IMP
IDA
ISO
(MGI:3843127|PMID:19299583), (MGI:3843754|PMID:19141540), (MGI:4819446|PMID:20562852), (MGI:5437152|PMID:22611086), (MGI:5553223|PMID:23525013)
(MGI:5442460|PMID:22653727), (MGI:5568140|PMID:24736997)
UniProt
MGI
PMID:19141540 PMID:19299583 PMID:20562852 PMID:22611086 PMID:22653727 PMID:23525013 PMID:24736997 GO_REF:0000096 MGI:3843127 MGI:3843754 MGI:4819446 MGI:4834177 MGI:5437152 MGI:5442460 MGI:5553223 MGI:5568140 NCBI chr 7:113,178,471...113,314,126
Ensembl chr 7:113,207,465...113,314,126
JBrowse link
G Atf4 activating transcription factor 4 IMP (MGI:5292598|PMID:21768648) UniProt PMID:21768648 MGI:5292598 NCBI chr15:80,255,184...80,257,545
Ensembl chr15:80,255,184...80,257,541
JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 ISO
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3798698|PMID:18411297), (MGI:6282958|PMID:30012868)
MGI
GO_Central
BHF-UCL
PMID:18411297 PMID:21873635 PMID:30012868 GO_REF:0000096 MGI:3798698 MGI:4834177 MGI:6201960 MGI:6282958 NCBI chr 6:108,660,629...108,666,925
Ensembl chr 6:108,660,629...108,666,925
JBrowse link
G Bhlhe41 basic helix-loop-helix family, member e41 IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3798698|PMID:18411297)
GO_Central
BHF-UCL
PMID:18411297 PMID:21873635 MGI:3798698 MGI:6201960 NCBI chr 6:145,858,243...145,865,420
Ensembl chr 6:145,858,243...145,865,558
JBrowse link
G Cartpt CART prepropeptide ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr13:99,898,483...99,910,179
Ensembl chr13:99,898,489...99,901,091
JBrowse link
G Cavin3 caveolae associated 3 IMP (MGI:5508702|PMID:23079727) UniProt PMID:23079727 MGI:5508702 NCBI chr 7:105,480,616...105,482,197
Ensembl chr 7:105,480,083...105,482,300
JBrowse link
G Ciart circadian associated repressor of transcription IMP
IBA
(MGI:5545849|PMID:24385426), (MGI:5568140|PMID:24736997)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:24385426 PMID:24736997 MGI:5545849 MGI:5568140 MGI:6201960 NCBI chr 3:95,878,500...95,882,257
Ensembl chr 3:95,878,503...95,882,251
JBrowse link
G Clock circadian locomotor output cycles kaput ISO
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:2683983|PMID:14672706), (MGI:3794495|PMID:18316400), (MGI:3843127|PMID:19299583), (MGI:3843754|PMID:19141540), (MGI:4837055|PMID:20430893), (MGI:5292598|PMID:21768648), (MGI:5297789|PMID:15147242), (MGI:5442460|PMID:22653727), (MGI:5503234|PMID:23785138), (MGI:6282958|PMID:30012868)
MGI
GO_Central
UniProt
PMID:14672706 PMID:15147242 PMID:18316400 PMID:19141540 PMID:19299583 PMID:20430893 PMID:21768648 PMID:21873635 PMID:22653727 PMID:23785138 PMID:30012868 GO_REF:0000096 MGI:2683983 MGI:3794495 MGI:3843127 MGI:3843754 MGI:4834177 MGI:4837055 MGI:5292598 MGI:5297789 MGI:5442460 MGI:5503234 MGI:6201960 MGI:6282958 NCBI chr 5:76,209,868...76,305,603
Ensembl chr 5:76,209,868...76,304,792
JBrowse link
G Crem cAMP responsive element modulator IMP (MGI:5494765|PMID:23443664) UniProt PMID:23443664 MGI:5494765 NCBI chr18:3,266,354...3,337,773
Ensembl chr18:3,266,048...3,337,748
JBrowse link
G Cry1 cryptochrome 1 (photolyase-like) IBA
IGI
IMP
(MGI:6201960|PMID:21873635)
(MGI:5302136|PMID:22170608)
(MGI:3843127|PMID:19299583), (MGI:5464222|PMID:23133559), (MGI:5490394|PMID:23616524), (MGI:5545849|PMID:24385426)
GO_Central
UniProt
PMID:19299583 PMID:21873635 PMID:22170608 PMID:23133559 PMID:23616524 PMID:24385426 MGI:3843127 MGI:5302136 MGI:5464222 MGI:5490394 MGI:5545849 MGI:6201960 NCBI chr10:85,131,700...85,185,054
Ensembl chr10:85,131,700...85,185,064
JBrowse link
G Cry2 cryptochrome 2 (photolyase-like) IBA
IMP
IGI
(MGI:6201960|PMID:21873635)
(MGI:3843127|PMID:19299583), (MGI:5490394|PMID:23616524)
(MGI:5302136|PMID:22170608)
GO_Central
UniProt
PMID:19299583 PMID:21873635 PMID:22170608 PMID:23616524 MGI:3843127 MGI:5302136 MGI:5490394 MGI:6201960 NCBI chr 2:92,403,646...92,434,085
Ensembl chr 2:92,403,646...92,434,043
JBrowse link
G Csnk1d casein kinase 1, delta IMP (MGI:3849793|PMID:19414593), (MGI:5294280|PMID:21930935) UniProt PMID:19414593 PMID:21930935 MGI:3849793 MGI:5294280 NCBI chr11:120,957,709...120,991,350
Ensembl chr11:120,958,990...120,991,330
JBrowse link
G Csnk1e casein kinase 1, epsilon IMP (MGI:5294280|PMID:21930935) UniProt PMID:21930935 MGI:5294280 NCBI chr15:79,417,852...79,455,579
Ensembl chr15:79,417,856...79,455,566
JBrowse link
G Drd2 dopamine receptor D2 IMP (MGI:3625767|PMID:16606840) MGI PMID:16606840 MGI:3625767 NCBI chr 9:49,340,360...49,408,177
Ensembl chr 9:49,340,627...49,408,177
JBrowse link
G Drd3 dopamine receptor D3 IMP (MGI:3611612|PMID:15878801) MGI PMID:15878801 MGI:3611612 NCBI chr16:43,754,015...43,825,982
Ensembl chr16:43,754,026...43,822,932
JBrowse link
G Egr1 early growth response 1 IMP (MGI:6219065|PMID:26471974), (MGI:6258624|PMID:29138967) UniProt PMID:26471974 PMID:29138967 MGI:6219065 MGI:6258624 NCBI chr18:34,861,207...34,864,956
Ensembl chr18:34,859,823...34,864,984
JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IMP (MGI:5495336|PMID:23395176) UniProt PMID:23395176 MGI:5495336 NCBI chr 6:87,042,846...87,092,207
Ensembl chr 6:87,042,846...87,092,197
JBrowse link
G Hdac1 histone deacetylase 1 IDA (MGI:5567917|PMID:15226430) UniProt PMID:15226430 MGI:5567917 NCBI chr 4:129,516,104...129,542,646
Ensembl chr 4:129,516,104...129,542,713
JBrowse link
G Hdac2 histone deacetylase 2 IDA (MGI:5567917|PMID:15226430) UniProt PMID:15226430 MGI:5567917 NCBI chr10:36,974,297...37,001,889
Ensembl chr10:36,974,544...37,001,889
JBrowse link
G Hdac3 histone deacetylase 3 IMP
IGI
(MGI:5882311|PMID:26776516)
(MGI:3821398|PMID:19037247)
UniProt
MGI
PMID:19037247 PMID:26776516 MGI:3821398 MGI:5882311 NCBI chr18:37,936,971...37,955,015
Ensembl chr18:37,935,844...37,955,016
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IDA (MGI:3794926|PMID:18332112) UniProt PMID:18332112 MGI:3794926 NCBI chr 1:178,321,108...178,338,891
Ensembl chr 1:178,321,108...178,337,797
JBrowse link
G Huwe1 HECT, UBA and WWE domain containing 1 IMP
ISO
(MGI:4458969|PMID:20534529) UniProt
MGI
PMID:20534529 GO_REF:0000096 MGI:4458969 MGI:4834177 NCBI chr  X:151,800,785...151,935,417
Ensembl chr  X:151,800,807...151,935,417
JBrowse link
G Id1 inhibitor of DNA binding 1, HLH protein IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:152,736,251...152,737,410
Ensembl chr 2:152,736,251...152,737,410
JBrowse link
G Id2 inhibitor of DNA binding 2 IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4420353|PMID:19740747)
GO_Central
UniProt
PMID:19740747 PMID:21873635 MGI:4420353 MGI:6201960 NCBI chr12:25,093,799...25,096,092
Ensembl chr12:25,093,799...25,097,140
JBrowse link
G Id3 inhibitor of DNA binding 3 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:136,143,822...136,145,392
Ensembl chr 4:136,143,497...136,145,755
JBrowse link
G Id4 inhibitor of DNA binding 4 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:48,261,116...48,266,028
Ensembl chr13:48,261,228...48,266,026
JBrowse link
G Kdm2a lysine (K)-specific demethylase 2A ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:4,316,144...4,398,721
Ensembl chr19:4,314,419...4,398,285
JBrowse link
G Kdm5a lysine (K)-specific demethylase 5A IMP (MGI:5288521|PMID:21960634) UniProt PMID:21960634 MGI:5288521 NCBI chr 6:120,364,099...120,444,574
Ensembl chr 6:120,364,124...120,444,574
JBrowse link
G Kdm8 lysine (K)-specific demethylase 8 IMP (MGI:6270295|PMID:30500822) UniProt PMID:30500822 MGI:6270295 NCBI chr 7:125,444,620...125,463,651
Ensembl chr 7:125,444,676...125,462,269
JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A IMP (MGI:5607228|PMID:21113167) UniProt PMID:21113167 MGI:5607228 NCBI chr 9:44,803,355...44,881,352
Ensembl chr 9:44,803,355...44,881,296
JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 IMP (MGI:5607511|PMID:24353284) UniProt PMID:24353284 MGI:5607511 NCBI chr 2:109,917,647...110,014,257
Ensembl chr 2:109,917,647...110,014,257
JBrowse link
G Maged1 MAGE family member D1 IMP (MGI:5508569|PMID:20300063) UniProt PMID:20300063 MGI:5508569 NCBI chr  X:94,535,474...94,542,025
Ensembl chr  X:94,535,474...94,542,143
JBrowse link
G Mc3r melanocortin 3 receptor IMP (MGI:3821632|PMID:19036988) UniProt PMID:19036988 MGI:3821632 NCBI chr 2:172,248,492...172,251,114
Ensembl chr 2:172,248,492...172,251,114
JBrowse link
G Mta1 metastasis associated 1 IMP (MGI:5582861|PMID:24089055) UniProt PMID:24089055 MGI:5582861 NCBI chr12:113,098,248...113,137,206
Ensembl chr12:113,098,278...113,137,206
JBrowse link
G Mybbp1a MYB binding protein (P160) 1a IDA (MGI:5009503|PMID:19129230) UniProt PMID:19129230 MGI:5009503 NCBI chr11:72,441,327...72,451,770
Ensembl chr11:72,441,355...72,451,768
JBrowse link
G Mycbp2 MYC binding protein 2, E3 ubiquitin protein ligase ISO
IMP
(MGI:4458969|PMID:20534529) MGI
UniProt
PMID:20534529 GO_REF:0000096 MGI:4458969 MGI:4834177 NCBI chr14:103,113,411...103,346,840
Ensembl chr14:103,113,411...103,346,814
JBrowse link
G Nampt nicotinamide phosphoribosyltransferase IMP (MGI:3843127|PMID:19299583) UniProt PMID:19299583 MGI:3843127 NCBI chr12:32,820,335...32,853,369
Ensembl chr12:32,819,545...32,853,349
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 IMP (MGI:5607392|PMID:24529706) UniProt PMID:24529706 MGI:5607392 NCBI chr 1:13,139,105...13,374,227
Ensembl chr 1:13,139,105...13,374,083
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 IGI (MGI:3821398|PMID:19037247) MGI PMID:19037247 MGI:3821398 NCBI chr11:62,315,663...62,457,414
Ensembl chr11:62,316,426...62,458,541
JBrowse link
G Ngfr nerve growth factor receptor (TNFR superfamily, member 16) IMP (MGI:5503234|PMID:23785138) UniProt PMID:23785138 MGI:5503234 NCBI chr11:95,568,818...95,587,698
Ensembl chr11:95,568,818...95,587,735
JBrowse link
G Noct nocturnin IMP (MGI:4837993|PMID:20685873) UniProt PMID:20685873 MGI:4837993 NCBI chr 3:51,224,447...51,251,654
Ensembl chr 3:51,224,447...51,251,644
JBrowse link
G Npas2 neuronal PAS domain protein 2 IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3794495|PMID:18316400), (MGI:5518489|PMID:24048828), (MGI:6282961|PMID:29163035)
GO_Central
UniProt
PMID:18316400 PMID:21873635 PMID:24048828 PMID:29163035 MGI:3794495 MGI:5518489 MGI:6201960 MGI:6282961 NCBI chr 1:39,193,702...39,363,240
Ensembl chr 1:39,193,731...39,363,236
JBrowse link
G Nr0b2 nuclear receptor subfamily 0, group B, member 2 IMP (MGI:6275703|PMID:25212631), (MGI:6282985|PMID:30555544) UniProt PMID:25212631 PMID:30555544 MGI:6275703 MGI:6282985 NCBI chr 4:133,553,376...133,556,686
Ensembl chr 4:133,553,376...133,556,536
JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 IMP (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chr11:98,767,932...98,775,377
Ensembl chr11:98,767,932...98,775,333
JBrowse link
G Nrip1 nuclear receptor interacting protein 1 ISO
IMP
IBA
(MGI:5586794|PMID:21628546)
(MGI:6201960|PMID:21873635)
MGI
UniProt
GO_Central
PMID:21628546 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:5586794 MGI:6201960 NCBI chr16:76,287,403...76,373,827
Ensembl chr16:76,287,400...76,373,827
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) IMP (MGI:5495336|PMID:23395176) UniProt PMID:23395176 MGI:5495336 NCBI chr  X:101,640,011...101,684,351
Ensembl chr  X:101,640,060...101,684,351
JBrowse link
G Per1 period circadian clock 1 IBA
ISO
IDA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4429726|PMID:20159955)
(MGI:3578039|PMID:15888647)
GO_Central
MGI
UniProt
PMID:15888647 PMID:20159955 PMID:21873635 GO_REF:0000096 MGI:3578039 MGI:4429726 MGI:4834177 MGI:6201960 NCBI chr11:69,095,108...69,109,965
Ensembl chr11:69,095,217...69,109,960
JBrowse link
G Per2 period circadian clock 2 IBA
IMP
IDA
(MGI:6201960|PMID:21873635)
(MGI:1935010|PMID:11395012), (MGI:4410390|PMID:19917250), (MGI:5319572|PMID:22504074)
(MGI:4429726|PMID:20159955)
GO_Central
UniProt
PMID:11395012 PMID:19917250 PMID:20159955 PMID:21873635 PMID:22504074 MGI:1935010 MGI:4410390 MGI:4429726 MGI:5319572 MGI:6201960 NCBI chr 1:91,415,977...91,459,351
Ensembl chr 1:91,415,982...91,459,324
JBrowse link
G Per3 period circadian clock 3 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:150,997,018...151,044,707
Ensembl chr 4:151,003,652...151,044,665
JBrowse link
G Pml promyelocytic leukemia IDA (MGI:5314433|PMID:22274616) UniProt PMID:22274616 MGI:5314433 NCBI chr 9:58,217,179...58,249,796
Ensembl chr 9:58,218,076...58,249,786
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha IDA (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chr15:85,734,910...85,806,851
Ensembl chr15:85,734,983...85,802,819
JBrowse link
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha IDA (MGI:3715412|PMID:17476214) UniProt PMID:17476214 MGI:3715412 NCBI chr 5:51,454,249...52,115,853
Ensembl chr 5:51,454,250...51,567,726
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA (MGI:5294280|PMID:21930935) UniProt PMID:21930935 MGI:5294280 NCBI chr19:4,192,174...4,195,419
Ensembl chr19:4,192,065...4,195,420
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IBA
IDA
(MGI:6201960|PMID:21873635)
(MGI:5294280|PMID:21930935)
GO_Central
UniProt
PMID:21873635 PMID:21930935 MGI:5294280 MGI:6201960 NCBI chr 5:32,458,848...32,493,713
Ensembl chr 5:32,458,843...32,517,433
JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma IDA (MGI:5294280|PMID:21930935) UniProt PMID:21930935 MGI:5294280 NCBI chr 5:122,154,967...122,175,273
Ensembl chr 5:122,158,278...122,175,273
JBrowse link
G Prkg2 protein kinase, cGMP-dependent, type II IMP (MGI:3630244|PMID:12725729) MGI PMID:12725729 MGI:3630244 NCBI chr 5:98,929,773...99,037,375
Ensembl chr 5:98,929,773...99,037,351
JBrowse link
G Prmt5 protein arginine N-methyltransferase 5 IMP (MGI:5464222|PMID:23133559) UniProt PMID:23133559 MGI:5464222 NCBI chr14:54,507,182...54,517,470
Ensembl chr14:54,507,187...54,517,525
JBrowse link
G Rai1 retinoic acid induced 1 IMP
IBA
ISO
(MGI:5489969|PMID:22578325)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
MGI
PMID:21873635 PMID:22578325 GO_REF:0000096 MGI:4834177 MGI:5489969 MGI:6201960 NCBI chr11:60,104,917...60,199,197
Ensembl chr11:60,105,013...60,199,197
JBrowse link
G Rbm4 RNA binding motif protein 4 IMP (MGI:3703208|PMID:17264215) MGI PMID:17264215 MGI:3703208 NCBI chr19:4,784,293...4,794,009
Ensembl chr19:4,784,293...4,793,901
JBrowse link
G Rbm4b RNA binding motif protein 4B IDA (MGI:3703208|PMID:17264215) UniProt PMID:17264215 MGI:3703208 NCBI chr19:4,756,452...4,765,946
Ensembl chr19:4,756,497...4,767,065
JBrowse link
G Relb avian reticuloendotheliosis viral (v-rel) oncogene related B IMP (MGI:5574290|PMID:22894897) UniProt PMID:22894897 MGI:5574290 NCBI chr 7:19,606,217...19,629,438
Ensembl chr 7:19,606,217...19,629,438
JBrowse link
G Rora RAR-related orphan receptor alpha IDA (MGI:5504349|PMID:22753030) UniProt PMID:22753030 MGI:5504349 NCBI chr 9:68,653,404...69,388,246
Ensembl chr 9:68,653,786...69,388,246
JBrowse link
G Rorc RAR-related orphan receptor gamma IMP (MGI:5504349|PMID:22753030), (MGI:5582866|PMID:23723244) UniProt PMID:22753030 PMID:23723244 MGI:5504349 MGI:5582866 NCBI chr 3:94,372,794...94,398,276
Ensembl chr 3:94,372,794...94,398,276
JBrowse link
G Sirt1 sirtuin 1 IMP
ISO
(MGI:3807721|PMID:18662546), (MGI:3843127|PMID:19299583) UniProt
MGI
PMID:18662546 PMID:19299583 GO_REF:0000096 MGI:3807721 MGI:3843127 MGI:4834177 NCBI chr10:63,319,005...63,339,035
Ensembl chr10:63,319,005...63,381,704
JBrowse link
G Top1 topoisomerase (DNA) I ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:160,645,897...160,722,764
Ensembl chr 2:160,645,888...160,722,764
JBrowse link
G Usp2 ubiquitin specific peptidase 2 IMP (MGI:5607210|PMID:23213472), (MGI:5908516|PMID:26756164) UniProt PMID:23213472 PMID:26756164 MGI:5607210 MGI:5908516 NCBI chr 9:44,067,021...44,095,627
Ensembl chr 9:44,067,021...44,095,627
JBrowse link
G Zfhx3 zinc finger homeobox 3 IMP (MGI:5660827|PMID:26232227) UniProt PMID:26232227 MGI:5660827 NCBI chr 8:108,279,311...108,961,636
Ensembl chr 8:107,942,644...108,961,630
JBrowse link
G Zpbp2 zona pellucida binding protein 2 IMP (MGI:6364050|PMID:31560728) MGI PMID:31560728 MGI:6364050 NCBI chr11:98,551,097...98,558,665
Ensembl chr11:98,551,097...98,558,665
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  biological_process 23351
    multicellular organismal process 8896
      circadian regulation of gene expression 71
Path 2
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  biological_process 23351
    biological regulation 13134
      regulation of biological process 12495
        regulation of metabolic process 6790
          regulation of macromolecule metabolic process 6285
            regulation of gene expression 4843
              circadian regulation of gene expression 71
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