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ONTOLOGY REPORT - ANNOTATIONS


Term:circadian regulation of gene expression
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Accession:GO:0032922 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours.
Synonyms:related_synonym: circadian regulation of protein expression;   diurnal variation of gene expression;   diurnal variation of protein expression


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circadian regulation of gene expression term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADK adenosine kinase ISO RGD PMID:12675911 RGD:2291861 NCBI chr10:70,672,967...71,236,950
Ensembl chr10:73,342,900...73,902,490
JBrowse link
G AHR aryl hydrocarbon receptor ISO (MGI:4820700|PMID:20106950) UniProt PMID:20106950 MGI:4820700 NCBI chr 7:17,949,254...17,998,737 JBrowse link
G ARNTL aryl hydrocarbon receptor nuclear translocator like ISO (PMID:24005054)
(MGI:3843127|PMID:19299583), (MGI:3843754|PMID:19141540), (MGI:4819446|PMID:20562852), (MGI:5437152|PMID:22611086), (MGI:5553223|PMID:23525013)
(MGI:5442460|PMID:22653727), (MGI:5568140|PMID:24736997)
UniProtKB
UniProt
PMID:19141540 PMID:19299583 PMID:20562852 PMID:22611086 PMID:22653727 PMID:23525013 PMID:24005054 PMID:24736997 MGI:3843127 MGI:3843754 MGI:4819446 MGI:5437152 MGI:5442460 MGI:5553223 MGI:5568140 NCBI chr11:13,436,580...13,547,135
Ensembl chr11:13,163,028...13,240,376
JBrowse link
G ATF4 activating transcription factor 4 ISO (MGI:5292598|PMID:21768648) UniProt PMID:21768648 MGI:5292598 NCBI chr22:20,426,743...20,428,892
Ensembl chr22:38,248,094...38,249,249
JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 ISO (PMID:18411297)
(MGI:3798698|PMID:18411297), (MGI:6282958|PMID:30012868)
BHF-UCL PMID:18411297 PMID:30012868 MGI:3798698 MGI:6282958 NCBI chr 3:4,927,487...4,933,215
Ensembl chr 3:5,028,515...5,032,470
JBrowse link
G BHLHE41 basic helix-loop-helix family member e41 ISO (MGI:3798698|PMID:18411297) BHF-UCL PMID:18411297 MGI:3798698 NCBI chr12:60,194,758...60,199,344 JBrowse link
G CARTPT CART prepropeptide ISO PMID:15680948 HGNC PMID:15680948 RGD:8553315 NCBI chr 5:43,591,683...43,593,586
Ensembl chr 5:44,236,114...44,238,229
JBrowse link
G CAVIN3 caveolae associated protein 3 ISO (MGI:5508702|PMID:23079727) UniProt PMID:23079727 MGI:5508702 NCBI chr11:6,451,364...6,453,206
Ensembl chr11:6,133,656...6,135,485
JBrowse link
G CIART circadian associated repressor of transcription ISO (MGI:5545849|PMID:24385426), (MGI:5568140|PMID:24736997) UniProt PMID:24385426 PMID:24736997 MGI:5545849 MGI:5568140 NCBI chr 1:125,627,812...125,632,367
Ensembl chr 1:129,278,742...129,283,271
JBrowse link
G CLOCK clock circadian regulator ISO (PMID:24005054)
(MGI:2683983|PMID:14672706), (MGI:3794495|PMID:18316400), (MGI:3843127|PMID:19299583), (MGI:3843754|PMID:19141540), (MGI:4837055|PMID:20430893), (MGI:5292598|PMID:21768648), (MGI:5297789|PMID:15147242), (MGI:5442460|PMID:22653727), (MGI:5503234|PMID:23785138), (MGI:6282958|PMID:30012868)
(PMID:21980503), (PMID:28985504)
UniProtKB
UniProt
PMID:14672706 PMID:15147242 PMID:18316400 PMID:19141540 PMID:19299583 PMID:20430893 PMID:21768648 PMID:21980503 PMID:22653727 PMID:23785138 PMID:24005054 PMID:28985504 PMID:30012868 MGI:2683983 MGI:3794495 MGI:3843127 MGI:3843754 MGI:4837055 MGI:5292598 MGI:5297789 MGI:5442460 MGI:5503234 MGI:6282958 NCBI chr 4:68,391,310...68,509,813
Ensembl chr 4:75,018,898...75,066,726
JBrowse link
G CREM cAMP responsive element modulator ISO (MGI:5494765|PMID:23443664) UniProt PMID:23443664 MGI:5494765 NCBI chr10:35,247,426...35,335,545
Ensembl chr10:35,825,218...35,912,432
JBrowse link
G CRY1 cryptochrome circadian regulator 1 ISO (MGI:5302136|PMID:22170608)
(MGI:3843127|PMID:19299583), (MGI:5464222|PMID:23133559), (MGI:5490394|PMID:23616524), (MGI:5545849|PMID:24385426)
UniProt PMID:19299583 PMID:22170608 PMID:23133559 PMID:23616524 PMID:24385426 MGI:3843127 MGI:5302136 MGI:5464222 MGI:5490394 MGI:5545849 NCBI chr12:104,558,874...104,658,833
Ensembl chr12:107,954,262...108,052,484
JBrowse link
G CRY2 cryptochrome circadian regulator 2 ISO (MGI:5302136|PMID:22170608)
(MGI:3843127|PMID:19299583), (MGI:5490394|PMID:23616524)
UniProt PMID:19299583 PMID:22170608 PMID:23616524 MGI:3843127 MGI:5302136 MGI:5490394 NCBI chr11:45,801,504...45,837,357
Ensembl chr11:46,293,717...46,329,759
JBrowse link
G CSNK1D casein kinase 1 delta ISO (MGI:3849793|PMID:19414593), (MGI:5294280|PMID:21930935) UniProt PMID:19414593 PMID:21930935 MGI:3849793 MGI:5294280 NCBI chr17:76,648,677...76,683,054
Ensembl chr17:82,462,467...82,494,348
JBrowse link
G CSNK1E casein kinase 1 epsilon ISO (MGI:5294280|PMID:21930935) UniProt PMID:21930935 MGI:5294280 NCBI chr22:19,202,599...19,229,344 JBrowse link
G DRD2 dopamine receptor D2 ISO (MGI:3625767|PMID:16606840) MGI PMID:16606840 MGI:3625767 NCBI chr11:108,289,838...108,357,174
Ensembl chr11:112,132,703...112,198,935
JBrowse link
G DRD3 dopamine receptor D3 ISO (MGI:3611612|PMID:15878801) MGI PMID:15878801 MGI:3611612 NCBI chr 3:111,265,834...111,317,176
Ensembl chr 3:118,187,636...118,237,403
JBrowse link
G EGR1 early growth response 1 ISO (MGI:6219065|PMID:26471974), (MGI:6258624|PMID:29138967) UniProt PMID:26471974 PMID:29138967 MGI:6219065 MGI:6258624 NCBI chr 5:133,845,305...133,849,291
Ensembl chr 5:139,975,635...139,979,260
JBrowse link
G GFPT1 glutamine--fructose-6-phosphate transaminase 1 ISO (MGI:5495336|PMID:23395176) UniProt PMID:23395176 MGI:5495336 NCBI chr2A:69,363,229...69,430,182
Ensembl chr2A:70,488,763...70,551,141
JBrowse link
G HDAC1 histone deacetylase 1 ISO (MGI:5567917|PMID:15226430) UniProt PMID:15226430 MGI:5567917 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
JBrowse link
G HDAC2 histone deacetylase 2 ISO (MGI:5567917|PMID:15226430) UniProt PMID:15226430 MGI:5567917 NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004
JBrowse link
G HDAC3 histone deacetylase 3 ISO (MGI:3821398|PMID:19037247)
(MGI:5882311|PMID:26776516)
MGI
UniProt
PMID:19037247 PMID:26776516 MGI:3821398 MGI:5882311 NCBI chr 5:136,981,790...136,997,786
Ensembl chr 5:143,094,406...143,110,322
JBrowse link
G HNF1B HNF1 homeobox B ISO RGD PMID:9545279 RGD:2312721 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U ISO (MGI:3794926|PMID:18332112) UniProt PMID:18332112 MGI:3794926 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031
JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 ISO (PMID:20534529)
(MGI:4458969|PMID:20534529)
UniProt PMID:20534529 MGI:4458969 NCBI chr  X:45,746,228...45,897,250
Ensembl chr  X:53,855,404...54,005,366
JBrowse link
G ID2 inhibitor of DNA binding 2 ISO (MGI:4420353|PMID:19740747) UniProt PMID:19740747 MGI:4420353 NCBI chr2A:8,681,592...8,684,014
Ensembl chr2A:8,847,776...8,850,720
JBrowse link
G KDM2A lysine demethylase 2A ISO (PMID:26037310) UniProt PMID:26037310 NCBI chr11:62,470,549...62,616,135
Ensembl chr11:65,793,464...65,930,498
JBrowse link
G KDM5A lysine demethylase 5A ISO (MGI:5288521|PMID:21960634) UniProt PMID:21960634 MGI:5288521 NCBI chr12:342,555...452,161
Ensembl chr12:319,273...423,634
JBrowse link
G KDM8 lysine demethylase 8 ISO (MGI:6270295|PMID:30500822) UniProt PMID:30500822 MGI:6270295 Ensembl chr16:27,577,230...27,595,164 JBrowse link
G KMT2A lysine methyltransferase 2A ISO (MGI:5607228|PMID:21113167) UniProt PMID:21113167 MGI:5607228 NCBI chr11:113,273,198...113,364,404 JBrowse link
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 ISO (MGI:5607511|PMID:24353284) UniProt PMID:24353284 MGI:5607511 NCBI chr11:27,330,279...27,437,201
Ensembl chr11:27,229,963...27,291,571
JBrowse link
G MAGED1 MAGE family member D1 ISO (MGI:5508569|PMID:20300063) UniProt PMID:20300063 MGI:5508569 NCBI chr  X:43,999,576...44,098,848
Ensembl chr  X:51,984,080...51,992,850
JBrowse link
G MC3R melanocortin 3 receptor ISO (MGI:3821632|PMID:19036988) UniProt PMID:19036988 MGI:3821632 NCBI chr20:52,582,826...52,585,688 JBrowse link
G MTA1 metastasis associated 1 ISO (MGI:5582861|PMID:24089055) UniProt PMID:24089055 MGI:5582861 NCBI chr14:86,058,412...86,111,736 JBrowse link
G MYBBP1A MYB binding protein 1a ISO (MGI:5009503|PMID:19129230) UniProt PMID:19129230 MGI:5009503 NCBI chr17:4,593,741...4,610,203
Ensembl chr17:4,586,431...4,603,097
JBrowse link
G MYCBP2 MYC binding protein 2 ISO (PMID:20534529)
(MGI:4458969|PMID:20534529)
UniProt PMID:20534529 MGI:4458969 NCBI chr13:58,262,251...58,544,819
Ensembl chr13:77,306,509...77,586,843
JBrowse link
G NAMPT nicotinamide phosphoribosyltransferase ISO (MGI:3843127|PMID:19299583) UniProt PMID:19299583 MGI:3843127 NCBI chr 7:98,227,071...98,262,254 JBrowse link
G NCOA2 nuclear receptor coactivator 2 ISO (MGI:5607392|PMID:24529706) UniProt PMID:24529706 MGI:5607392 NCBI chr 8:66,632,139...66,929,526
Ensembl chr 8:68,293,018...68,400,479
JBrowse link
G NCOR1 nuclear receptor corepressor 1 ISO (MGI:3821398|PMID:19037247) MGI PMID:19037247 MGI:3821398 NCBI chr17:34,934,452...35,121,195 JBrowse link
G NGFR nerve growth factor receptor ISO (MGI:5503234|PMID:23785138) UniProt PMID:23785138 MGI:5503234 NCBI chr17:8,089,600...8,109,361
Ensembl chr17:8,075,316...8,094,966
JBrowse link
G NOCT nocturnin ISO (MGI:4837993|PMID:20685873) UniProt PMID:20685873 MGI:4837993 NCBI chr 4:131,378,656...131,409,711
Ensembl chr 4:142,691,169...142,719,514
JBrowse link
G NPAS2 neuronal PAS domain protein 2 ISO (MGI:3794495|PMID:18316400), (MGI:5518489|PMID:24048828), (MGI:6282961|PMID:29163035) UniProt PMID:18316400 PMID:24048828 PMID:29163035 MGI:3794495 MGI:5518489 MGI:6282961 Ensembl chr2A:101,868,933...101,972,866 JBrowse link
G NR0B2 nuclear receptor subfamily 0 group B member 2 ISO (MGI:6275703|PMID:25212631), (MGI:6282985|PMID:30555544) UniProt PMID:25212631 PMID:30555544 MGI:6275703 MGI:6282985 NCBI chr 1:26,174,055...26,176,689
Ensembl chr 1:27,230,362...27,232,942
JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 ISO (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chr17:17,188,390...17,196,315
Ensembl chr17:17,409,669...17,417,600
JBrowse link
G NRIP1 nuclear receptor interacting protein 1 ISO (PMID:21628546)
(MGI:5586794|PMID:21628546)
UniProtKB
UniProt
PMID:21628546 MGI:5586794 NCBI chr21:1,565,149...1,801,358
Ensembl chr21:15,065,197...15,068,673
JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase ISO (MGI:5495336|PMID:23395176) UniProt PMID:23395176 MGI:5495336 NCBI chr  X:60,798,219...60,840,948
Ensembl chr  X:70,852,687...70,894,921
JBrowse link
G PER1 period circadian regulator 1 ISO (PMID:18411297), (PMID:24005054)
(MGI:3578039|PMID:15888647)
(MGI:4429726|PMID:20159955)
BHF-UCL
UniProt
PMID:15888647 PMID:18411297 PMID:20159955 PMID:24005054 MGI:3578039 MGI:4429726 NCBI chr17:43,502,080...43,518,098
Ensembl chr17:48,234,360...48,250,391
JBrowse link
G PER2 period circadian regulator 2 ISO (MGI:1935010|PMID:11395012), (MGI:4410390|PMID:19917250), (MGI:5319572|PMID:22504074)
(MGI:4429726|PMID:20159955)
UniProt PMID:11395012 PMID:19917250 PMID:20159955 PMID:22504074 MGI:1935010 MGI:4410390 MGI:4429726 MGI:5319572 NCBI chr2B:125,477,021...125,521,577
Ensembl chr2B:244,328,122...244,371,040
JBrowse link
G PML PML nuclear body scaffold ISO (MGI:5314433|PMID:22274616) UniProt PMID:22274616 MGI:5314433 NCBI chr15:52,903,874...52,955,151
Ensembl chr15:71,658,884...71,710,883
JBrowse link
G PPARA peroxisome proliferator activated receptor alpha ISO (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 Ensembl chr22:45,218,364...45,302,970 JBrowse link
G PPARGC1A PPARG coactivator 1 alpha ISO (MGI:3715412|PMID:17476214) UniProt PMID:17476214 MGI:3715412 NCBI chr 4:18,196,431...18,876,889
Ensembl chr 4:23,483,377...23,581,212
JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha ISO (MGI:5294280|PMID:21930935) UniProt PMID:21930935 MGI:5294280 NCBI chr11:62,756,659...62,760,369
Ensembl chr11:66,068,007...66,071,611
JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta ISO (MGI:5294280|PMID:21930935) UniProt PMID:21930935 MGI:5294280 NCBI chr2A:28,758,176...28,809,561
Ensembl chr2A:28,862,083...28,889,401
JBrowse link
G PPP1CC protein phosphatase 1 catalytic subunit gamma ISO (MGI:5294280|PMID:21930935) UniProt PMID:21930935 MGI:5294280 NCBI chr12:108,288,158...108,311,128 JBrowse link
G PRKG2 protein kinase cGMP-dependent 2 ISO (MGI:3630244|PMID:12725729) MGI PMID:12725729 MGI:3630244 NCBI chr 4:42,987,217...43,114,993
Ensembl chr 4:48,836,953...48,960,383
JBrowse link
G PRMT5 protein arginine methyltransferase 5 ISO (MGI:5464222|PMID:23133559) UniProt PMID:23133559 MGI:5464222 NCBI chr14:3,737,741...3,746,646
Ensembl chr14:21,836,984...21,846,018
JBrowse link
G RAI1 retinoic acid induced 1 ISO (PMID:22578325)
(MGI:5489969|PMID:22578325)
UniProtKB
UniProt
PMID:22578325 MGI:5489969 NCBI chr17:33,484,543...33,614,608
Ensembl chr17:38,431,946...38,461,861
JBrowse link
G RBM4 RNA binding motif protein 4 ISO (MGI:3703208|PMID:17264215) MGI PMID:17264215 MGI:3703208 NCBI chr11:61,996,221...62,026,007
Ensembl chr11:65,298,404...65,349,183
JBrowse link
G RBM4B RNA binding motif protein 4B ISO (MGI:3703208|PMID:17264215) UniProt PMID:17264215 MGI:3703208 NCBI chr11:62,022,622...62,035,570
Ensembl chr11:65,345,796...65,358,473
JBrowse link
G RELB RELB proto-oncogene, NF-kB subunit ISO (MGI:5574290|PMID:22894897) UniProt PMID:22894897 MGI:5574290 NCBI chr19:41,948,559...41,987,121
Ensembl chr19:50,554,864...50,590,223
JBrowse link
G RORA RAR related orphan receptor A ISO (MGI:5504349|PMID:22753030) UniProt PMID:22753030 MGI:5504349 NCBI chr15:39,461,553...40,200,118
Ensembl chr15:57,771,735...57,980,460
JBrowse link
G RORC RAR related orphan receptor C ISO (MGI:5504349|PMID:22753030), (MGI:5582866|PMID:23723244) UniProt PMID:22753030 PMID:23723244 MGI:5504349 MGI:5582866 NCBI chr 1:127,164,725...127,190,479
Ensembl chr 1:130,808,705...130,834,490
JBrowse link
G SIRT1 sirtuin 1 ISO (PMID:18662546)
(MGI:3807721|PMID:18662546), (MGI:3843127|PMID:19299583)
UniProtKB
UniProt
PMID:18662546 PMID:19299583 MGI:3807721 MGI:3843127 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G TOP1 DNA topoisomerase I ISO (PMID:22904072) UniProtKB PMID:22904072 NCBI chr20:37,368,606...37,464,649
Ensembl chr20:38,468,452...38,562,652
JBrowse link
G USP2 ubiquitin specific peptidase 2 ISO (MGI:5607210|PMID:23213472), (MGI:5908516|PMID:26756164) UniProt PMID:23213472 PMID:26756164 MGI:5607210 MGI:5908516 NCBI chr11:114,196,725...114,223,411
Ensembl chr11:118,124,350...118,150,868
JBrowse link
G ZFHX3 zinc finger homeobox 3 ISO (MGI:5660827|PMID:26232227) UniProt PMID:26232227 MGI:5660827 NCBI chr16:51,936,471...52,209,695
Ensembl chr16:72,635,666...72,808,360
JBrowse link
G ZPBP2 zona pellucida binding protein 2 ISO (MGI:6364050|PMID:31560728) MGI PMID:31560728 MGI:6364050 NCBI chr17:17,410,278...17,420,458
Ensembl chr17:17,630,126...17,639,771
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12593
    multicellular organismal process 6479
      circadian regulation of gene expression 67
Path 2
Term Annotations click to browse term
  biological_process 12593
    biological regulation 9196
      regulation of biological process 8692
        regulation of metabolic process 5181
          regulation of macromolecule metabolic process 4732
            regulation of gene expression 3559
              circadian regulation of gene expression 67
paths to the root