ONTOLOGY REPORT - ANNOTATIONS
Term: circadian regulation of gene expression
Accession: GO:0032922
browse the term
Definition: Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours.
Synonyms: related_synonym: circadian regulation of protein expression; diurnal variation of gene expression; diurnal variation of protein expression
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ADK
adenosine kinase
ISO
RGD
PMID:12675911
RGD:2291861
NCBI chr10:70,672,967...71,236,950
Ensembl chr10:73,342,900...73,902,490
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AHR
aryl hydrocarbon receptor
ISO
(MGI:4820700|PMID:20106950)
UniProt
PMID:20106950
MGI:4820700
NCBI chr 7:17,949,254...17,998,737
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ARNTL
aryl hydrocarbon receptor nuclear translocator like
ISO
(PMID:24005054) (MGI:3843127|PMID:19299583), (MGI:3843754|PMID:19141540), (MGI:4819446|PMID:20562852), (MGI:5437152|PMID:22611086), (MGI:5553223|PMID:23525013) (MGI:5442460|PMID:22653727), (MGI:5568140|PMID:24736997)
UniProtKB UniProt
PMID:19141540 PMID:19299583 PMID:20562852 PMID:22611086 PMID:22653727 PMID:23525013 PMID:24005054 PMID:24736997
MGI:3843127 MGI:3843754 MGI:4819446 MGI:5437152 MGI:5442460 MGI:5553223 MGI:5568140
NCBI chr11:13,436,580...13,547,135
Ensembl chr11:13,163,028...13,240,376
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ATF4
activating transcription factor 4
ISO
(MGI:5292598|PMID:21768648)
UniProt
PMID:21768648
MGI:5292598
NCBI chr22:20,426,743...20,428,892
Ensembl chr22:38,248,094...38,249,249
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BHLHE40
basic helix-loop-helix family member e40
ISO
(PMID:18411297) (MGI:3798698|PMID:18411297), (MGI:6282958|PMID:30012868)
BHF-UCL
PMID:18411297 PMID:30012868
MGI:3798698 MGI:6282958
NCBI chr 3:4,927,487...4,933,215
Ensembl chr 3:5,028,515...5,032,470
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BHLHE41
basic helix-loop-helix family member e41
ISO
(MGI:3798698|PMID:18411297)
BHF-UCL
PMID:18411297
MGI:3798698
NCBI chr12:60,194,758...60,199,344
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CARTPT
CART prepropeptide
ISO
PMID:15680948
HGNC
PMID:15680948
RGD:8553315
NCBI chr 5:43,591,683...43,593,586
Ensembl chr 5:44,236,114...44,238,229
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CAVIN3
caveolae associated protein 3
ISO
(MGI:5508702|PMID:23079727)
UniProt
PMID:23079727
MGI:5508702
NCBI chr11:6,451,364...6,453,206
Ensembl chr11:6,133,656...6,135,485
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CIART
circadian associated repressor of transcription
ISO
(MGI:5545849|PMID:24385426), (MGI:5568140|PMID:24736997)
UniProt
PMID:24385426 PMID:24736997
MGI:5545849 MGI:5568140
NCBI chr 1:125,627,812...125,632,367
Ensembl chr 1:129,278,742...129,283,271
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CLOCK
clock circadian regulator
ISO
(PMID:24005054) (MGI:2683983|PMID:14672706), (MGI:3794495|PMID:18316400), (MGI:3843127|PMID:19299583), (MGI:3843754|PMID:19141540), (MGI:4837055|PMID:20430893), (MGI:5292598|PMID:21768648), (MGI:5297789|PMID:15147242), (MGI:5442460|PMID:22653727), (MGI:5503234|PMID:23785138), (MGI:6282958|PMID:30012868) (PMID:21980503), (PMID:28985504)
UniProtKB UniProt
PMID:14672706 PMID:15147242 PMID:18316400 PMID:19141540 PMID:19299583 PMID:20430893 PMID:21768648 PMID:21980503 PMID:22653727 PMID:23785138 PMID:24005054 PMID:28985504 PMID:30012868
MGI:2683983 MGI:3794495 MGI:3843127 MGI:3843754 MGI:4837055 MGI:5292598 MGI:5297789 MGI:5442460 MGI:5503234 MGI:6282958
NCBI chr 4:68,391,310...68,509,813
Ensembl chr 4:75,018,898...75,066,726
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CREM
cAMP responsive element modulator
ISO
(MGI:5494765|PMID:23443664)
UniProt
PMID:23443664
MGI:5494765
NCBI chr10:35,247,426...35,335,545
Ensembl chr10:35,825,218...35,912,432
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CRY1
cryptochrome circadian regulator 1
ISO
(MGI:5302136|PMID:22170608) (MGI:3843127|PMID:19299583), (MGI:5464222|PMID:23133559), (MGI:5490394|PMID:23616524), (MGI:5545849|PMID:24385426)
UniProt
PMID:19299583 PMID:22170608 PMID:23133559 PMID:23616524 PMID:24385426
MGI:3843127 MGI:5302136 MGI:5464222 MGI:5490394 MGI:5545849
NCBI chr12:104,558,874...104,658,833
Ensembl chr12:107,954,262...108,052,484
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CRY2
cryptochrome circadian regulator 2
ISO
(MGI:5302136|PMID:22170608) (MGI:3843127|PMID:19299583), (MGI:5490394|PMID:23616524)
UniProt
PMID:19299583 PMID:22170608 PMID:23616524
MGI:3843127 MGI:5302136 MGI:5490394
NCBI chr11:45,801,504...45,837,357
Ensembl chr11:46,293,717...46,329,759
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CSNK1D
casein kinase 1 delta
ISO
(MGI:3849793|PMID:19414593), (MGI:5294280|PMID:21930935)
UniProt
PMID:19414593 PMID:21930935
MGI:3849793 MGI:5294280
NCBI chr17:76,648,677...76,683,054
Ensembl chr17:82,462,467...82,494,348
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CSNK1E
casein kinase 1 epsilon
ISO
(MGI:5294280|PMID:21930935)
UniProt
PMID:21930935
MGI:5294280
NCBI chr22:19,202,599...19,229,344
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DRD2
dopamine receptor D2
ISO
(MGI:3625767|PMID:16606840)
MGI
PMID:16606840
MGI:3625767
NCBI chr11:108,289,838...108,357,174
Ensembl chr11:112,132,703...112,198,935
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DRD3
dopamine receptor D3
ISO
(MGI:3611612|PMID:15878801)
MGI
PMID:15878801
MGI:3611612
NCBI chr 3:111,265,834...111,317,176
Ensembl chr 3:118,187,636...118,237,403
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EGR1
early growth response 1
ISO
(MGI:6219065|PMID:26471974), (MGI:6258624|PMID:29138967)
UniProt
PMID:26471974 PMID:29138967
MGI:6219065 MGI:6258624
NCBI chr 5:133,845,305...133,849,291
Ensembl chr 5:139,975,635...139,979,260
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GFPT1
glutamine--fructose-6-phosphate transaminase 1
ISO
(MGI:5495336|PMID:23395176)
UniProt
PMID:23395176
MGI:5495336
NCBI chr2A:69,363,229...69,430,182
Ensembl chr2A:70,488,763...70,551,141
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HDAC1
histone deacetylase 1
ISO
(MGI:5567917|PMID:15226430)
UniProt
PMID:15226430
MGI:5567917
NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
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HDAC2
histone deacetylase 2
ISO
(MGI:5567917|PMID:15226430)
UniProt
PMID:15226430
MGI:5567917
NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004
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HDAC3
histone deacetylase 3
ISO
(MGI:3821398|PMID:19037247) (MGI:5882311|PMID:26776516)
MGI UniProt
PMID:19037247 PMID:26776516
MGI:3821398 MGI:5882311
NCBI chr 5:136,981,790...136,997,786
Ensembl chr 5:143,094,406...143,110,322
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HNF1B
HNF1 homeobox B
ISO
RGD
PMID:9545279
RGD:2312721
NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863
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HNRNPU
heterogeneous nuclear ribonucleoprotein U
ISO
(MGI:3794926|PMID:18332112)
UniProt
PMID:18332112
MGI:3794926
NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031
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HUWE1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1
ISO
(PMID:20534529) (MGI:4458969|PMID:20534529)
UniProt
PMID:20534529
MGI:4458969
NCBI chr X:45,746,228...45,897,250
Ensembl chr X:53,855,404...54,005,366
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ID2
inhibitor of DNA binding 2
ISO
(MGI:4420353|PMID:19740747)
UniProt
PMID:19740747
MGI:4420353
NCBI chr2A:8,681,592...8,684,014
Ensembl chr2A:8,847,776...8,850,720
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KDM2A
lysine demethylase 2A
ISO
(PMID:26037310)
UniProt
PMID:26037310
NCBI chr11:62,470,549...62,616,135
Ensembl chr11:65,793,464...65,930,498
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KDM5A
lysine demethylase 5A
ISO
(MGI:5288521|PMID:21960634)
UniProt
PMID:21960634
MGI:5288521
NCBI chr12:342,555...452,161
Ensembl chr12:319,273...423,634
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KDM8
lysine demethylase 8
ISO
(MGI:6270295|PMID:30500822)
UniProt
PMID:30500822
MGI:6270295
Ensembl chr16:27,577,230...27,595,164
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KMT2A
lysine methyltransferase 2A
ISO
(MGI:5607228|PMID:21113167)
UniProt
PMID:21113167
MGI:5607228
NCBI chr11:113,273,198...113,364,404
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LGR4
leucine rich repeat containing G protein-coupled receptor 4
ISO
(MGI:5607511|PMID:24353284)
UniProt
PMID:24353284
MGI:5607511
NCBI chr11:27,330,279...27,437,201
Ensembl chr11:27,229,963...27,291,571
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MAGED1
MAGE family member D1
ISO
(MGI:5508569|PMID:20300063)
UniProt
PMID:20300063
MGI:5508569
NCBI chr X:43,999,576...44,098,848
Ensembl chr X:51,984,080...51,992,850
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MC3R
melanocortin 3 receptor
ISO
(MGI:3821632|PMID:19036988)
UniProt
PMID:19036988
MGI:3821632
NCBI chr20:52,582,826...52,585,688
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MTA1
metastasis associated 1
ISO
(MGI:5582861|PMID:24089055)
UniProt
PMID:24089055
MGI:5582861
NCBI chr14:86,058,412...86,111,736
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MYBBP1A
MYB binding protein 1a
ISO
(MGI:5009503|PMID:19129230)
UniProt
PMID:19129230
MGI:5009503
NCBI chr17:4,593,741...4,610,203
Ensembl chr17:4,586,431...4,603,097
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MYCBP2
MYC binding protein 2
ISO
(PMID:20534529) (MGI:4458969|PMID:20534529)
UniProt
PMID:20534529
MGI:4458969
NCBI chr13:58,262,251...58,544,819
Ensembl chr13:77,306,509...77,586,843
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NAMPT
nicotinamide phosphoribosyltransferase
ISO
(MGI:3843127|PMID:19299583)
UniProt
PMID:19299583
MGI:3843127
NCBI chr 7:98,227,071...98,262,254
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NCOA2
nuclear receptor coactivator 2
ISO
(MGI:5607392|PMID:24529706)
UniProt
PMID:24529706
MGI:5607392
NCBI chr 8:66,632,139...66,929,526
Ensembl chr 8:68,293,018...68,400,479
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NCOR1
nuclear receptor corepressor 1
ISO
(MGI:3821398|PMID:19037247)
MGI
PMID:19037247
MGI:3821398
NCBI chr17:34,934,452...35,121,195
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NGFR
nerve growth factor receptor
ISO
(MGI:5503234|PMID:23785138)
UniProt
PMID:23785138
MGI:5503234
NCBI chr17:8,089,600...8,109,361
Ensembl chr17:8,075,316...8,094,966
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NOCT
nocturnin
ISO
(MGI:4837993|PMID:20685873)
UniProt
PMID:20685873
MGI:4837993
NCBI chr 4:131,378,656...131,409,711
Ensembl chr 4:142,691,169...142,719,514
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NPAS2
neuronal PAS domain protein 2
ISO
(MGI:3794495|PMID:18316400), (MGI:5518489|PMID:24048828), (MGI:6282961|PMID:29163035)
UniProt
PMID:18316400 PMID:24048828 PMID:29163035
MGI:3794495 MGI:5518489 MGI:6282961
Ensembl chr2A:101,868,933...101,972,866
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NR0B2
nuclear receptor subfamily 0 group B member 2
ISO
(MGI:6275703|PMID:25212631), (MGI:6282985|PMID:30555544)
UniProt
PMID:25212631 PMID:30555544
MGI:6275703 MGI:6282985
NCBI chr 1:26,174,055...26,176,689
Ensembl chr 1:27,230,362...27,232,942
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NR1D1
nuclear receptor subfamily 1 group D member 1
ISO
(MGI:4429726|PMID:20159955)
UniProt
PMID:20159955
MGI:4429726
NCBI chr17:17,188,390...17,196,315
Ensembl chr17:17,409,669...17,417,600
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NRIP1
nuclear receptor interacting protein 1
ISO
(PMID:21628546) (MGI:5586794|PMID:21628546)
UniProtKB UniProt
PMID:21628546
MGI:5586794
NCBI chr21:1,565,149...1,801,358
Ensembl chr21:15,065,197...15,068,673
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OGT
O-linked N-acetylglucosamine (GlcNAc) transferase
ISO
(MGI:5495336|PMID:23395176)
UniProt
PMID:23395176
MGI:5495336
NCBI chr X:60,798,219...60,840,948
Ensembl chr X:70,852,687...70,894,921
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PER1
period circadian regulator 1
ISO
(PMID:18411297), (PMID:24005054) (MGI:3578039|PMID:15888647) (MGI:4429726|PMID:20159955)
BHF-UCL UniProt
PMID:15888647 PMID:18411297 PMID:20159955 PMID:24005054
MGI:3578039 MGI:4429726
NCBI chr17:43,502,080...43,518,098
Ensembl chr17:48,234,360...48,250,391
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PER2
period circadian regulator 2
ISO
(MGI:1935010|PMID:11395012), (MGI:4410390|PMID:19917250), (MGI:5319572|PMID:22504074) (MGI:4429726|PMID:20159955)
UniProt
PMID:11395012 PMID:19917250 PMID:20159955 PMID:22504074
MGI:1935010 MGI:4410390 MGI:4429726 MGI:5319572
NCBI chr2B:125,477,021...125,521,577
Ensembl chr2B:244,328,122...244,371,040
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PML
PML nuclear body scaffold
ISO
(MGI:5314433|PMID:22274616)
UniProt
PMID:22274616
MGI:5314433
NCBI chr15:52,903,874...52,955,151
Ensembl chr15:71,658,884...71,710,883
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PPARA
peroxisome proliferator activated receptor alpha
ISO
(MGI:4429726|PMID:20159955)
UniProt
PMID:20159955
MGI:4429726
Ensembl chr22:45,218,364...45,302,970
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PPARGC1A
PPARG coactivator 1 alpha
ISO
(MGI:3715412|PMID:17476214)
UniProt
PMID:17476214
MGI:3715412
NCBI chr 4:18,196,431...18,876,889
Ensembl chr 4:23,483,377...23,581,212
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PPP1CA
protein phosphatase 1 catalytic subunit alpha
ISO
(MGI:5294280|PMID:21930935)
UniProt
PMID:21930935
MGI:5294280
NCBI chr11:62,756,659...62,760,369
Ensembl chr11:66,068,007...66,071,611
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PPP1CB
protein phosphatase 1 catalytic subunit beta
ISO
(MGI:5294280|PMID:21930935)
UniProt
PMID:21930935
MGI:5294280
NCBI chr2A:28,758,176...28,809,561
Ensembl chr2A:28,862,083...28,889,401
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PPP1CC
protein phosphatase 1 catalytic subunit gamma
ISO
(MGI:5294280|PMID:21930935)
UniProt
PMID:21930935
MGI:5294280
NCBI chr12:108,288,158...108,311,128
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PRKG2
protein kinase cGMP-dependent 2
ISO
(MGI:3630244|PMID:12725729)
MGI
PMID:12725729
MGI:3630244
NCBI chr 4:42,987,217...43,114,993
Ensembl chr 4:48,836,953...48,960,383
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PRMT5
protein arginine methyltransferase 5
ISO
(MGI:5464222|PMID:23133559)
UniProt
PMID:23133559
MGI:5464222
NCBI chr14:3,737,741...3,746,646
Ensembl chr14:21,836,984...21,846,018
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RAI1
retinoic acid induced 1
ISO
(PMID:22578325) (MGI:5489969|PMID:22578325)
UniProtKB UniProt
PMID:22578325
MGI:5489969
NCBI chr17:33,484,543...33,614,608
Ensembl chr17:38,431,946...38,461,861
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RBM4
RNA binding motif protein 4
ISO
(MGI:3703208|PMID:17264215)
MGI
PMID:17264215
MGI:3703208
NCBI chr11:61,996,221...62,026,007
Ensembl chr11:65,298,404...65,349,183
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RBM4B
RNA binding motif protein 4B
ISO
(MGI:3703208|PMID:17264215)
UniProt
PMID:17264215
MGI:3703208
NCBI chr11:62,022,622...62,035,570
Ensembl chr11:65,345,796...65,358,473
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RELB
RELB proto-oncogene, NF-kB subunit
ISO
(MGI:5574290|PMID:22894897)
UniProt
PMID:22894897
MGI:5574290
NCBI chr19:41,948,559...41,987,121
Ensembl chr19:50,554,864...50,590,223
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RORA
RAR related orphan receptor A
ISO
(MGI:5504349|PMID:22753030)
UniProt
PMID:22753030
MGI:5504349
NCBI chr15:39,461,553...40,200,118
Ensembl chr15:57,771,735...57,980,460
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RORC
RAR related orphan receptor C
ISO
(MGI:5504349|PMID:22753030), (MGI:5582866|PMID:23723244)
UniProt
PMID:22753030 PMID:23723244
MGI:5504349 MGI:5582866
NCBI chr 1:127,164,725...127,190,479
Ensembl chr 1:130,808,705...130,834,490
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SIRT1
sirtuin 1
ISO
(PMID:18662546) (MGI:3807721|PMID:18662546), (MGI:3843127|PMID:19299583)
UniProtKB UniProt
PMID:18662546 PMID:19299583
MGI:3807721 MGI:3843127
NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
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TOP1
DNA topoisomerase I
ISO
(PMID:22904072)
UniProtKB
PMID:22904072
NCBI chr20:37,368,606...37,464,649
Ensembl chr20:38,468,452...38,562,652
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USP2
ubiquitin specific peptidase 2
ISO
(MGI:5607210|PMID:23213472), (MGI:5908516|PMID:26756164)
UniProt
PMID:23213472 PMID:26756164
MGI:5607210 MGI:5908516
NCBI chr11:114,196,725...114,223,411
Ensembl chr11:118,124,350...118,150,868
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ZFHX3
zinc finger homeobox 3
ISO
(MGI:5660827|PMID:26232227)
UniProt
PMID:26232227
MGI:5660827
NCBI chr16:51,936,471...52,209,695
Ensembl chr16:72,635,666...72,808,360
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ZPBP2
zona pellucida binding protein 2
ISO
(MGI:6364050|PMID:31560728)
MGI
PMID:31560728
MGI:6364050
NCBI chr17:17,410,278...17,420,458
Ensembl chr17:17,630,126...17,639,771
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