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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of DNA-templated transcription elongation
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Accession:GO:0032784 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
Synonyms:exact_synonym: regulation of DNA-dependent transcription, elongation
 broad_synonym: regulation of RNA elongation;   regulation of transcriptional elongation
 related_synonym: transcription elongation regulator activity


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regulation of DNA-templated transcription elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccar2 cell cycle and apoptosis regulator 2 involved_in ISO (PMID:22446626) RGD PMID:22446626 NCBI chr15:45,212,797...45,228,001
Ensembl chr15:45,212,803...45,227,636 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:9326587) RGD PMID:9326587 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Setd5 SET domain containing 5 involved_in ISO (MGI:6381850|PMID:31515109) RGD PMID:31515109 MGI:6381850 NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894 		JBrowse link
G Zfp326 zinc finger protein 326 involved_in ISO
IBA		 (PMID:22446626)
GO_REF:0000033		 RGD
GO_Central		 PMID:22446626 GO_REF:0000033 NCBI chr14:3,941,210...3,980,419
Ensembl chr14:3,941,958...3,980,384 		JBrowse link
negative regulation of DNA-templated transcription, elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929), (PMID:9857195) RGD PMID:9450929 PMID:9857195 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:10075709), (PMID:9450929) RGD PMID:9450929 PMID:10075709 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Wdr82 WD repeat domain 82 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 1:77,106,309...77,143,827
Ensembl chr 1:77,106,250...77,142,691 		JBrowse link
negative regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:10318824), (PMID:19204372)		 Ensembl
RGD		 PMID:10318824 PMID:19204372 GO_REF:0000107 NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Eapp E2F-associated phosphoprotein acts_upstream_of_or_within ISO (PMID:15716352) RGD PMID:15716352 NCBI chr 6:72,166,486...72,194,357
Ensembl chr 6:72,170,301...72,193,734 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:2661097 (PMID:19303854) RGD PMID:19303854 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Hexim1 HEXIM P-TEFb complex subunit 1 involved_in ISO
ISS		 (PMID:14580347)
GO_REF:0000024		 RGD
UniProt		 PMID:14580347 GO_REF:0000024 NCBI chr10:88,062,808...88,064,920
Ensembl chr10:88,062,803...88,066,189 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO		 GO_REF:0000107
(PMID:10490622)		 Ensembl
RGD		 PMID:10490622 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Nelfa negative elongation factor complex member A involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:12612062)
GO_REF:0000033
(PMID:21670248)		 RGD
GO_Central		 PMID:12612062 PMID:21670248 GO_REF:0000033 NCBI chr14:76,808,920...76,832,998
Ensembl chr14:76,808,870...76,832,994 		JBrowse link
G Nelfb negative elongation factor complex member B involved_in ISO
IBA		 (MGI:3845453|PMID:19340312), (MGI:5576446|PMID:24656816), (MGI:6270977|PMID:25773599)
(PMID:12612062)
GO_REF:0000033		 RGD
GO_Central		 PMID:12612062 PMID:19340312 PMID:24656816 PMID:25773599 GO_REF:0000033 MGI:3845453 MGI:5576446 MGI:6270977 NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403 		JBrowse link
G Nelfcd negative elongation factor complex member C/D involved_in ISO
IBA		 (PMID:12612062)
GO_REF:0000033		 RGD
GO_Central		 PMID:12612062 GO_REF:0000033 NCBI chr 3:163,213,765...163,224,886
Ensembl chr 3:163,213,762...163,224,884 		JBrowse link
G Nelfe negative elongation factor complex member E involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:12612062), (PMID:14701750), (PMID:27256882)
GO_REF:0000033
(PMID:31399344)
(PMID:21670248)		 RGD
GO_Central		 PMID:12612062 PMID:14701750 PMID:21670248 PMID:27256882 PMID:31399344 GO_REF:0000033 NCBI chr20:3,976,512...3,982,389
Ensembl chr20:3,976,518...3,982,355 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO (PMID:35393539) RGD PMID:35393539 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Recql5 RecQ like helicase 5 involved_in ISO
ISS		 (PMID:23748380)
GO_REF:0000024		 RGD
UniProt		 PMID:23748380 GO_REF:0000024 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652 		JBrowse link
G Rnf168 ring finger protein 168 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:20550933)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20550933 GO_REF:0000024 GO_REF:0000107 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO
ISS		 (PMID:20550933)
GO_REF:0000024		 RGD
UniProt		 PMID:20550933 GO_REF:0000024 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17284610)		 Ensembl
RGD		 PMID:17284610 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6214653|PMID:25247314), (PMID:31399344) RGD PMID:25247314 PMID:31399344 MGI:6214653 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit acts_upstream_of_or_within ISO (PMID:21670248) RGD PMID:21670248 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in ISO (PMID:7660122) RGD PMID:7660122 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
positive regulation of DNA-templated transcription, elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnk cyclin K involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191 		JBrowse link
G Ccnt1 cyclin T1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:129,687,146...129,718,080
Ensembl chr 7:129,691,209...129,717,871 		JBrowse link
G Ccnt2 cyclin T2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in ISO
IEA		 (PMID:10882741)
GO_REF:0000107		 RGD
Ensembl		 PMID:10882741 GO_REF:0000107 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:9326587) RGD PMID:9326587 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6392952|PMID:31827282)		 UniProt
RGD		 PMID:31827282 GO_REF:0000024 MGI:6392952 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO (PMID:27256882) RGD PMID:27256882 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:31104839)		 UniProt
Ensembl
RGD		 PMID:31104839 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) RGD PMID:9450929 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) RGD PMID:9450929 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
positive regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 acts_upstream_of_or_within
involved_in		 ISO (PMID:18039861)
(PMID:19103749)		 RGD PMID:18039861 PMID:19103749 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Btbd18 BTB domain containing 18 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:69,743,057...69,751,096
Ensembl chr 3:69,745,012...69,751,042 		JBrowse link
G Cbx7 chromobox 7 IMP RGD PMID:19706751 RGD:9586729 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Ccnk cyclin K involved_in ISO (PMID:22988298), (PMID:26748711) RGD PMID:22988298 PMID:26748711 NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191 		JBrowse link
G Ccnt1 cyclin T1 involved_in ISO (PMID:30134174), (PMID:35393539), (PMID:9499409) RGD PMID:9499409 PMID:30134174 PMID:35393539 NCBI chr 7:129,687,146...129,718,080
Ensembl chr 7:129,691,209...129,717,871 		JBrowse link
G Ccnt2 cyclin T2 involved_in ISO (PMID:9499409) RGD PMID:9499409 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019 		JBrowse link
G Cdc73 cell division cycle 73 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Cdk12 cyclin-dependent kinase 12 involved_in ISO
IBA
IEA		 (PMID:22988298)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:22988298 GO_REF:0000033 GO_REF:0000107 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
Ensembl chr10:83,201,211...83,280,888 		JBrowse link
G Cdk13 cyclin-dependent kinase 13 involved_in ISO
IBA		 (PMID:26748711)
GO_REF:0000033		 RGD
GO_Central		 PMID:26748711 GO_REF:0000033 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:14701750), (PMID:30134174), (PMID:9499409)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:9499409 PMID:14701750 PMID:30134174 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:2148567|MGI:3841145 (PMID:30478225)		 Ensembl
RGD		 PMID:30478225 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dab2 DAB adaptor protein 2 involved_in ISO (MGI:5442512|PMID:15894542) RGD PMID:15894542 MGI:5442512 NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476 		JBrowse link
G Eapp E2F-associated phosphoprotein acts_upstream_of_or_within ISO (PMID:15716352) RGD PMID:15716352 NCBI chr 6:72,166,486...72,194,357
Ensembl chr 6:72,170,301...72,193,734 		JBrowse link
G Ell elongation factor for RNA polymerase II involved_in ISO
IBA		 (PMID:23932780)
GO_REF:0000033		 RGD
GO_Central		 PMID:23932780 GO_REF:0000033 NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118 		JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781 		JBrowse link
G Ell2l1 elongation factor for RNA polymerase II 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:145,878,600...145,888,249
Ensembl chr  X:145,878,614...145,887,896 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
G Eloc elongin C IDA RGD PMID:8202474 RGD:730008 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (PMID:21245044) RGD PMID:21245044 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Ldb1 LIM domain binding 1 involved_in ISO (MGI:4834059|PMID:20570862) RGD PMID:20570862 MGI:4834059 NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IMP RGD PMID:18086894 RGD:2292639 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Pwwp2a PWWP domain containing 2A involved_in ISO (MGI:6709552|PMID:30228260) RGD PMID:30228260 MGI:6709552 NCBI chr10:28,155,509...28,195,255
Ensembl chr10:28,155,605...28,194,308 		JBrowse link
G Pwwp2b PWWP domain containing 2B involved_in ISO (MGI:6709552|PMID:30228260) RGD PMID:30228260 MGI:6709552 NCBI chr 1:194,040,395...194,059,979
Ensembl chr 1:194,041,341...194,059,958 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (PMID:17234882)
(MGI:5508611|PMID:17234882)		 RGD PMID:17234882 MGI:5508611 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780 		JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 involved_in ISO UniProtKB:P50750 (PMID:26655721), (PMID:30134174) RGD PMID:26655721 PMID:30134174 NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463 		JBrowse link
regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eaf1 ELL associated factor 1 involved_in ISO (PMID:32087315) RGD PMID:32087315 NCBI chr16:6,698,322...6,713,071
Ensembl chr16:6,698,322...6,713,071 		JBrowse link
G Eaf2 ELL associated factor 2 involved_in ISO (PMID:32087315) RGD PMID:32087315 NCBI chr11:63,960,200...64,004,610
Ensembl chr11:63,960,200...64,004,610 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor IMP RGD PMID:31644904 RGD:126925983 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) RGD PMID:9450929 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) RGD PMID:9450929 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO (MGI:6323527|PMID:31128943) RGD PMID:31128943 MGI:6323527 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Zmynd11 zinc finger, MYND-type containing 11 involved_in ISO
IBA		 (MGI:5560379|PMID:24590075)
GO_REF:0000033		 RGD
GO_Central		 PMID:24590075 GO_REF:0000033 MGI:5560379 NCBI chr17:60,542,669...60,631,913
Ensembl chr17:60,543,077...60,631,902 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      macromolecule metabolic process 10146
        macromolecule biosynthetic process 7442
          gene expression 6970
            DNA-templated transcription 3497
              DNA-templated transcription elongation 121
                regulation of DNA-templated transcription elongation 56
                  negative regulation of DNA-templated transcription, elongation + 20
                  positive regulation of DNA-templated transcription, elongation + 33
                  regulation of transcription elongation by RNA polymerase I + 0
                  regulation of transcription elongation by RNA polymerase II + 49
Path 2
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      primary metabolic process 10923
        nucleobase-containing compound metabolic process 5736
          nucleic acid metabolic process 5148
            RNA metabolic process 4578
              RNA biosynthetic process 4308
                DNA-templated transcription 3497
                  DNA-templated transcription elongation 121
                    regulation of DNA-templated transcription elongation 56
                      negative regulation of DNA-templated transcription, elongation + 20
                      positive regulation of DNA-templated transcription, elongation + 33
                      regulation of transcription elongation by RNA polymerase I + 0
                      regulation of transcription elongation by RNA polymerase II + 49
paths to the root