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ONTOLOGY REPORT - ANNOTATIONS


Term:response to retinoic acid
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Accession:GO:0032526 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
Synonyms:exact_synonym: response to vitamin A acid


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response to retinoic acid term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase IEP RGD PMID:15042712 RGD:1600915 NCBI chr 3:4,374,679...4,394,374
Ensembl chr 3:4,374,602...4,394,428
JBrowse link
G Acer2 alkaline ceramidase 2 ISO (PMID:18945876) RGD PMID:18945876 NCBI chr 5:105,230,540...105,279,732
Ensembl chr 5:105,230,580...105,279,731
JBrowse link
G Adh1 alcohol dehydrogenase 1 (class I) ISO (MGI:MGI:74357|PMID:7748347) RGD PMID:7748347 MGI:MGI:74357 NCBI chr 2:243,550,655...243,562,243
Ensembl chr 2:243,550,627...243,687,857
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEP RGD PMID:11169459 RGD:2306337 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Apoe apolipoprotein E IEP RGD PMID:21907828 RGD:6903285 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Aqp3 aquaporin 3 (Gill blood group) ISO
IEA
(PMID:17943189)
GO_REF:0000107
RGD
Ensembl
PMID:17943189 GO_REF:0000107 NCBI chr 5:57,423,735...57,429,252
Ensembl chr 5:57,423,734...57,429,245
JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 IEP
ISO
(PMID:12000752) RGD PMID:12000752, PMID:11803116 RGD:704410 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Asxl1 ASXL transcriptional regulator 1 ISO (MGI:MGI:3688807|PMID:16606617) RGD PMID:16606617 MGI:MGI:3688807 NCBI chr 3:148,832,231...148,902,356
Ensembl chr 3:148,837,814...148,900,452
JBrowse link
G Bmp2 bone morphogenetic protein 2 IEP RGD PMID:8385738 RGD:2289028 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:8385738 RGD:2289028 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp6 bone morphogenetic protein 6 IEP RGD PMID:8385738 RGD:2289028 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Cd38 CD38 molecule IEP RGD PMID:11399650 RGD:2307263 NCBI chr14:71,714,768...71,754,990
Ensembl chr14:71,715,269...71,754,672
JBrowse link
G Clk2 CDC-like kinase 2 ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr 2:188,476,789...188,488,809
Ensembl chr 2:188,476,820...188,496,191
JBrowse link
G Ctsh cathepsin H ISO
ISS
(MGI:MGI:3722010|PMID:17500053)
GO_REF:0000024
RGD
UniProt
PMID:17500053 GO_REF:0000024, MGI:MGI:3722010 NCBI chr 8:97,439,155...97,458,293
Ensembl chr 8:97,439,161...97,458,287
JBrowse link
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 IEP RGD PMID:19497980 RGD:2317621 NCBI chr 1:266,422,127...266,429,947
Ensembl chr 1:266,422,132...266,428,239
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615
JBrowse link
G Cyp2c7 cytochrome P450, family 2, subfamily c, polypeptide 7 IEP RGD PMID:9202400 RGD:2301473 NCBI chr 1:147,422,999...148,119,979
Ensembl chr 1:148,053,687...148,119,857
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (MGI:MGI:3699686|PMID:17064353) RGD PMID:17064353 MGI:MGI:3699686 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Dnaaf2 dynein, axonemal, assembly factor 2 ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr 6:91,481,439...91,490,189
Ensembl chr 6:91,481,954...91,490,366
JBrowse link
G Drd1 dopamine receptor D1 IEP RGD PMID:15939542 RGD:7248765 NCBI chr17:11,099,736...11,104,352
Ensembl chr17:11,101,306...11,103,541
JBrowse link
G Dusp1 dual specificity phosphatase 1 IEP RGD PMID:15494319 RGD:2298682 NCBI chr10:16,970,642...16,973,425
Ensembl chr10:16,970,626...16,973,418
JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:17164434 RGD:1642048 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Gata4 GATA binding protein 4 ISO (MGI:MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:MGI:3799604 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gdap1 ganglioside-induced differentiation-associated-protein 1 ISO (MGI:MGI:1335633|PMID:10217254) RGD PMID:10217254 MGI:MGI:1335633 NCBI chr 5:1,328,963...1,347,946
Ensembl chr 5:1,328,913...1,347,921
JBrowse link
G Gdap2 ganglioside-induced differentiation-associated-protein 2 ISO (MGI:MGI:1335633|PMID:10217254) RGD PMID:10217254 MGI:MGI:1335633 NCBI chr 2:202,470,485...202,526,849
Ensembl chr 2:202,470,487...202,526,849
JBrowse link
G Gja1 gap junction protein, alpha 1 IEP RGD PMID:9570757 RGD:11568675 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Gjb2 gap junction protein, beta 2 IEP RGD PMID:9570757 RGD:11568675 NCBI chr15:37,377,313...37,394,494
Ensembl chr15:37,377,316...37,383,277
JBrowse link
G Hsd17b2 hydroxysteroid (17-beta) dehydrogenase 2 ISO
IEA
(PMID:17538076)
GO_REF:0000107
RGD
Ensembl
PMID:17538076 GO_REF:0000107 NCBI chr19:50,246,404...50,317,892
Ensembl chr19:50,246,402...50,317,891
JBrowse link
G Igf2r insulin-like growth factor 2 receptor IDA RGD PMID:9811861 RGD:2311629 NCBI chr 1:48,176,095...48,264,482
Ensembl chr 1:48,176,106...48,264,477
JBrowse link
G Igfbp2 insulin-like growth factor binding protein 2 IEP RGD PMID:11880314 RGD:1643103 NCBI chr 9:80,118,029...80,144,804
Ensembl chr 9:80,118,029...80,144,789
JBrowse link
G Igfbp7 insulin-like growth factor binding protein 7 IEP RGD PMID:9886829 RGD:1626580 NCBI chr14:33,010,300...33,070,193
Ensembl chr14:33,010,300...33,070,190
JBrowse link
G Ireb2 iron responsive element binding protein 2 IEP RGD PMID:19877527 RGD:6893274 NCBI chr 8:59,450,974...59,503,634
Ensembl chr 8:59,420,123...59,501,118
JBrowse link
G Klf4 Kruppel like factor 4 ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G Lefty1 left right determination factor 1 ISO (MGI:MGI:1346236|PMID:10500184) RGD PMID:10500184 MGI:MGI:1346236 NCBI chr13:99,212,778...99,217,786
Ensembl chr13:99,214,389...99,217,786
JBrowse link
G Lrat lecithin retinol acyltransferase IEP RGD PMID:19700416 RGD:6484694 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300
JBrowse link
G Lrp2 LDL receptor related protein 2 IEP RGD PMID:9541123 RGD:1641848 NCBI chr 3:55,665,153...55,822,484
Ensembl chr 3:55,665,145...55,822,551
JBrowse link
G Map7 microtubule-associated protein 7 ISO MGI:MGI:2148221 (MGI:MGI:1859100|PMID:10837026) RGD PMID:10837026 MGI:MGI:1859100 NCBI chr 1:15,620,665...15,748,203
Ensembl chr 1:15,620,653...15,748,203
JBrowse link
G Mest mesoderm specific transcript ISO (MGI:MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:MGI:3799604 NCBI chr 4:58,052,786...58,063,227
Ensembl chr 4:58,053,041...58,063,138
JBrowse link
G Micb MHC class I polypeptide-related sequence B ISO (PMID:12569559) RGD PMID:12569559 NCBI chr 1:79,754,587...79,772,092
Ensembl chr 1:79,754,587...79,772,092
JBrowse link
G Mmp2 matrix metallopeptidase 2 IEP RGD PMID:19099751 RGD:5129684 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:19099751 RGD:5129684 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Nanog Nanog homeobox ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr 4:155,531,906...155,539,268
Ensembl chr 4:155,531,906...155,539,268
JBrowse link
G Ncoa1 nuclear receptor coactivator 1 IMP RGD PMID:9808623 RGD:2293532 NCBI chr 6:28,677,563...28,931,844
Ensembl chr 6:28,677,540...28,931,843
JBrowse link
G Ovca2 OVCA2 serine hydrolase domain containing ISO (PMID:11979432) RGD PMID:11979432 NCBI chr10:62,017,347...62,020,509 JBrowse link
G Oxt oxytocin/neurophysin I prepropeptide IEP RGD PMID:15316117 RGD:2304180 NCBI chr 3:123,106,694...123,107,534
Ensembl chr 3:123,106,694...123,107,534
JBrowse link
G Pdgfa platelet derived growth factor subunit A IEP RGD PMID:15315332 RGD:2292166 NCBI chr12:17,734,141...17,756,186
Ensembl chr12:17,734,133...17,755,285
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IEP RGD PMID:17303670 RGD:2292175 NCBI chr18:56,364,586...56,406,381
Ensembl chr18:56,364,620...56,406,381
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Ptch1 patched 1 IEP RGD PMID:17307727 RGD:2303054 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Ptges prostaglandin E synthase IEP RGD PMID:18183617 RGD:2300091 NCBI chr 3:9,727,408...9,738,752
Ensembl chr 3:9,727,408...9,738,752
JBrowse link
G Rara retinoic acid receptor, alpha ISO (PMID:17538076)
MGI:MGI:1857622 (MGI:MGI:1931374|PMID:11222375)
RGD PMID:11222375, PMID:17538076 MGI:MGI:1931374 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarg retinoic acid receptor, gamma ISO (PMID:17943189) RGD PMID:17943189 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Rbp4 retinol binding protein 4 ISO (PMID:571335) RGD PMID:571335 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Rnf2 ring finger protein 2 IEP RGD PMID:20515739 RGD:9491842 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Rpl36al ribosomal protein L36a-like ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr18:1,504,178...1,505,581
Ensembl chr18:1,504,178...1,505,570
Ensembl chr10:1,504,178...1,505,570
Ensembl chr  X:1,504,178...1,505,570
JBrowse link
G Runx1 RUNX family transcription factor 1 ISO (MGI:MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:MGI:3799604 NCBI chr11:32,765,147...33,003,061
Ensembl chr11:32,769,165...33,003,021
JBrowse link
G Rxra retinoid X receptor alpha IEP
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:17538076)
Ensembl
RGD
PMID:17538076, PMID:9555940, PMID:21873635 GO_REF:0000107, RGD:1643120, RGD:13792537 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Rxrb retinoid X receptor beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,822,673...3,829,138
Ensembl chr20:3,823,042...3,829,140
JBrowse link
G Rxrg retinoid X receptor gamma IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:17161848, PMID:21873635 RGD:2325973, RGD:13792537 NCBI chr13:85,818,473...85,868,555
Ensembl chr13:85,818,427...85,868,552
JBrowse link
G Scamp3 secretory carrier membrane protein 3 ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr 2:188,488,907...188,495,147
Ensembl chr 2:188,476,820...188,496,191
JBrowse link
G Sftpa1 surfactant protein A1 IEP RGD PMID:9505268 RGD:4143481 NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
JBrowse link
G Sftpc surfactant protein C IEP RGD PMID:9505268 RGD:4143481 NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
JBrowse link
G Shh sonic hedgehog signaling molecule IEP RGD PMID:10633866 RGD:2306310 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Slc10a3 solute carrier family 10, member 3 ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr  X:156,335,385...156,340,256
Ensembl chr  X:156,336,450...156,340,234
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Sp100 SP100 nuclear antigen ISO (PMID:11313457) RGD PMID:11313457 NCBI chr 9:92,675,103...92,718,489
Ensembl chr 9:92,681,078...92,717,929
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 IEP RGD PMID:9121491 RGD:2308848 NCBI chr10:46,570,996...46,593,021
Ensembl chr10:46,570,996...46,593,009
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit IEP RGD PMID:20515739 RGD:9491842 NCBI chr10:67,325,101...67,371,588
Ensembl chr10:67,325,347...67,369,668
JBrowse link
G Synj1 synaptojanin 1 IMP RGD PMID:19282871 RGD:2312448 NCBI chr11:31,105,784...31,181,573
Ensembl chr11:31,104,787...31,180,642
JBrowse link
G Tek TEK receptor tyrosine kinase ISO (MGI:MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:MGI:3799604 NCBI chr 5:113,725,717...113,852,799
Ensembl chr 5:113,725,717...113,852,799
JBrowse link
G Tfrc transferrin receptor IEP RGD PMID:18029484 RGD:2292030 NCBI chr11:71,397,423...71,419,263
Ensembl chr11:71,397,383...71,419,223
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEP RGD PMID:16479313 RGD:2302093 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 ISO (MGI:MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:MGI:3799604 NCBI chr 5:137,294,544...137,321,116
Ensembl chr 5:137,294,544...137,321,121
JBrowse link
G Tlr4 toll-like receptor 4 IEP RGD PMID:20438866 RGD:7777075 NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
JBrowse link
G Tmem161a transmembrane protein 161A ISO (PMID:16551573) RGD PMID:16551573 NCBI chr16:20,985,841...20,996,351
Ensembl chr16:20,986,687...20,994,379
JBrowse link
G Tp53 tumor protein p53 IEP RGD PMID:17962954 RGD:2290560 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Trim16 tripartite motif-containing 16 ISO (PMID:16636064) RGD PMID:16636064 NCBI chr10:49,231,660...49,254,653
Ensembl chr10:49,231,730...49,254,621
JBrowse link
G Triml2 tripartite motif family-like 2 ISO (MGI:MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:MGI:3795829 NCBI chr16:52,116,975...52,127,591
Ensembl chr16:52,116,975...52,127,591
JBrowse link
cellular response to retinoic acid term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO (MGI:MGI:4411947|PMID:19752193) RGD PMID:19752193 MGI:MGI:4411947 NCBI chr 5:69,857,717...69,983,042
Ensembl chr 5:69,857,771...69,983,015
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO (PMID:17910947) RGD PMID:17910947 NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244
JBrowse link
G Add1 adducin 1 IDA RGD PMID:20493242 RGD:5148002 NCBI chr14:81,367,466...81,426,610
Ensembl chr14:81,367,468...81,426,496
JBrowse link
G Adnp2 ADNP homeobox 2 ISO (MGI:MGI:3793419|PMID:18179478) RGD PMID:18179478 MGI:MGI:3793419 NCBI chr18:76,637,415...76,661,186
Ensembl chr18:76,637,785...76,653,056
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO (PMID:18816858) RGD PMID:18816858 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aqp1 aquaporin 1 ISS
ISO
GO_REF:0000024
(PMID:12051745), (PMID:19424603)
UniProt
RGD
PMID:12051745, PMID:19424603 GO_REF:0000024 NCBI chr 4:85,551,503...85,563,683
Ensembl chr 4:85,551,502...85,569,360
JBrowse link
G Atm ATM serine/threonine kinase ISO (MGI:MGI:4837978|PMID:20876357) RGD PMID:20876357 MGI:MGI:4837978 NCBI chr 8:58,015,938...58,119,973
Ensembl chr 8:58,015,940...58,120,045
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 IEP RGD PMID:8944660 RGD:11576286 NCBI chr 1:81,852,423...81,881,565
Ensembl chr 1:81,852,429...81,881,549
JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:5521281|PMID:20025061)
Ensembl
RGD
PMID:20025061, PMID:21873635 GO_REF:0000107, MGI:MGI:5521281, RGD:13792537 NCBI chr 5:84,919,416...85,123,828
Ensembl chr 5:84,919,367...85,123,829
JBrowse link
G Brinp2 BMP/retinoic acid inducible neural specific 2 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:5521281|PMID:20025061)
Ensembl
RGD
PMID:20025061, PMID:21873635 GO_REF:0000107, MGI:MGI:5521281, RGD:13792537 NCBI chr13:75,948,679...76,049,363
Ensembl chr13:75,948,679...76,049,363
JBrowse link
G Brinp3 BMP/retinoic acid inducible neural specific 3 ISO
IBA
ISS
(MGI:MGI:5521281|PMID:20025061)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20025061, PMID:21873635 GO_REF:0000024, MGI:MGI:5521281, RGD:13792537 NCBI chr13:63,526,486...63,959,390
Ensembl chr13:63,526,486...63,959,332
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP RGD PMID:11274229 RGD:8549584 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:1921334, PMID:21181362 RGD:2316228, RGD:8552777 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col1a2 collagen type I alpha 2 chain IEP RGD PMID:15234273 RGD:5688233 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP RGD PMID:23810783 RGD:8661241 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO (MGI:MGI:4837978|PMID:20876357) RGD PMID:20876357 MGI:MGI:4837978 NCBI chr 9:71,229,753...71,298,994
Ensembl chr 9:71,230,108...71,293,435
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 ISO (PMID:18816858) RGD PMID:18816858 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 ISO (PMID:18816858) RGD PMID:18816858 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615
JBrowse link
G Eln elastin IEP RGD PMID:8238530 RGD:9585669 NCBI chr12:24,978,478...25,021,864
Ensembl chr12:24,978,483...25,021,863
JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:20711222 RGD:7364732 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Epha3 Eph receptor A3 ISO
IEA
(PMID:17910947)
GO_REF:0000107
RGD
Ensembl
PMID:17910947 GO_REF:0000107 NCBI chr11:421,253...783,037
Ensembl chr11:421,135...782,954
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:15389522 RGD:12801431 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Gjb3 gap junction protein, beta 3 IEP RGD PMID:8806447 RGD:12437074 NCBI chr 5:145,390,590...145,397,271
Ensembl chr 5:145,391,311...145,392,123
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IEP RGD PMID:16619265 RGD:5131544 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Hdac2 histone deacetylase 2 IEP RGD PMID:19486889 RGD:9590233 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hoxa1 homeobox A1 ISO (MGI:MGI:5500986|PMID:23723417) RGD PMID:23723417 MGI:MGI:5500986 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Hoxa2 homeobox A2 ISO (MGI:MGI:5500986|PMID:23723417) RGD PMID:23723417 MGI:MGI:5500986 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Htra2 HtrA serine peptidase 2 ISO (PMID:17297443) RGD PMID:17297443 NCBI chr 4:113,883,671...113,886,833
Ensembl chr 4:113,883,670...113,886,994
JBrowse link
G Ireb2 iron responsive element binding protein 2 IEP RGD PMID:22154532 RGD:12904026 NCBI chr 8:59,450,974...59,503,634
Ensembl chr 8:59,420,123...59,501,118
JBrowse link
G Irf1 interferon regulatory factor 1 IEP RGD PMID:15721283 RGD:5128785 NCBI chr10:39,109,530...39,116,532
Ensembl chr10:39,109,522...39,116,531
JBrowse link
G Klf4 Kruppel like factor 4 IEP RGD PMID:19486889 RGD:9590233 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G Krt13 keratin 13 IEP RGD PMID:7509732 RGD:2316552 NCBI chr10:88,032,130...88,036,040
Ensembl chr10:88,032,130...88,036,040
JBrowse link
G Lep leptin IEP RGD PMID:19212007 RGD:5128705 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
G Ltk leukocyte receptor tyrosine kinase ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 3:111,553,679...111,560,556
Ensembl chr 3:111,553,680...111,560,556
JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 5:16,526,058...16,642,648
Ensembl chr 5:16,526,058...16,642,648
JBrowse link
G Mef2c myocyte enhancer factor 2C IDA RGD PMID:17568621 RGD:5131615 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Meiosin meiosis initiator ISO (MGI:MGI:6441108|PMID:32032549) RGD PMID:32032549 MGI:MGI:6441108 NCBI chr 1:80,004,481...80,028,841 JBrowse link
G Muc1 mucin 1, cell surface associated IEP RGD PMID:8967520 RGD:633461 NCBI chr 2:188,543,137...188,547,874
Ensembl chr 2:188,543,137...188,547,874
JBrowse link
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming IEP RGD PMID:8967520 RGD:633461 NCBI chr 1:214,725,482...214,756,653 JBrowse link
G Myb MYB proto-oncogene, transcription factor IEP RGD PMID:8670250 RGD:11532681 NCBI chr 1:16,658,178...16,690,135
Ensembl chr 1:16,659,442...16,687,817
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IEP RGD PMID:12873812 RGD:10059626 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G Myog myogenin IEP RGD PMID:1323566 RGD:9686127 NCBI chr13:51,126,459...51,129,048
Ensembl chr13:51,126,459...51,129,048
JBrowse link
G Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 ISO (PMID:17297443) RGD PMID:17297443 NCBI chr16:21,275,311...21,282,246
Ensembl chr16:21,275,311...21,282,246
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IEP RGD PMID:10027563 RGD:2325652 NCBI chr 1:139,890,537...140,262,503
Ensembl chr 1:139,890,560...140,262,503
JBrowse link
G Orm1 orosomucoid 1 IEP RGD PMID:15157739 RGD:2316642 NCBI chr 5:79,179,668...79,182,820
Ensembl chr 5:79,179,417...79,182,820
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO (PMID:20171952) RGD PMID:20171952 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Pax2 paired box 2 ISO
ISS
(PMID:20171952)
GO_REF:0000024
RGD
UniProt
PMID:20171952 GO_REF:0000024 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 IEP RGD PMID:21519922 RGD:10428394 NCBI chr 3:171,213,936...171,219,885
Ensembl chr 3:171,213,936...171,219,871
JBrowse link
G Phb2 prohibitin 2 IEP RGD PMID:25031298 RGD:12903263 NCBI chr 4:157,230,769...157,235,375
Ensembl chr 4:157,230,769...157,235,367
JBrowse link
G Phc1 polyhomeotic homolog 1 ISO (MGI:MGI:67737|PMID:8070621) RGD PMID:8070621 MGI:MGI:67737 NCBI chr 4:155,093,947...155,118,838
Ensembl chr 4:155,093,949...155,116,154
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IEP RGD PMID:10797535 RGD:8553016 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta ISO (PMID:17910947) RGD PMID:17910947 NCBI chr15:42,827,306...42,947,796
Ensembl chr15:42,827,310...42,947,656
JBrowse link
G Ptk6 protein tyrosine kinase 6 ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 3:176,698,305...176,706,896
Ensembl chr 3:176,698,305...176,706,896
JBrowse link
G Ptk7 protein tyrosine kinase 7 ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
JBrowse link
G Rarg retinoic acid receptor, gamma IEP
ISO
(MGI:MGI:77094|PMID:2157970) RGD PMID:2157970, PMID:11072095 MGI:MGI:77094, RGD:1300463 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Ret ret proto-oncogene ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
JBrowse link
G Rorb RAR-related orphan receptor B IDA PMID:12958591 UniProt PMID:12958591 RGD:8553609 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rxrb retinoid X receptor beta ISO (MGI:MGI:4820711|PMID:18922886) RGD PMID:18922886 MGI:MGI:4820711 NCBI chr20:3,822,673...3,829,138
Ensembl chr20:3,823,042...3,829,140
JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:15051476 RGD:2312357 NCBI chr10:62,241,750...62,254,145
Ensembl chr10:62,241,756...62,254,287
JBrowse link
G Setx senataxin ISO (PMID:21576111) RGD PMID:21576111 NCBI chr 3:7,680,430...7,731,815
Ensembl chr 3:7,686,503...7,730,539
JBrowse link
G Slc6a4 solute carrier family 6 member 4 IEP RGD PMID:17895527 RGD:4889514 NCBI chr10:63,153,656...63,188,377
Ensembl chr10:63,153,651...63,176,463
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEP RGD PMID:10022522 RGD:10448942 NCBI chr 1:101,367,470...101,388,153
Ensembl chr 1:101,367,471...101,388,129
JBrowse link
G Snw1 SNW domain containing 1 ISO (PMID:19934264)
(MGI:MGI:5315685|PMID:19934264)
RGD PMID:19934264 MGI:MGI:5315685 NCBI chr 6:111,483,698...111,507,782
Ensembl chr 6:111,483,703...111,507,782
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (MGI:MGI:3848572|PMID:19389355)
(PMID:12420222)
RGD PMID:12420222, PMID:19389355 MGI:MGI:3848572 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Stra8 stimulated by retinoic acid 8 ISO (MGI:MGI:3839158|PMID:19301398), (MGI:MGI:6441108|PMID:32032549) RGD PMID:19301398, PMID:32032549 MGI:MGI:3839158, MGI:MGI:6441108 NCBI chr 4:62,447,724...62,474,802
Ensembl chr 4:62,457,694...62,473,360
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
(PMID:18816858)
GO_REF:0000024
RGD
UniProt
PMID:18816858 GO_REF:0000024 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbxt T-box transcription factor T IEP RGD PMID:20507357 RGD:8693647 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Tead1 TEA domain transcription factor 1 ISO (MGI:MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:MGI:5317256 NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061
JBrowse link
G Tead2 TEA domain transcription factor 2 ISO (MGI:MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:MGI:5317256 NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
JBrowse link
G Tesc tescalcin ISO (PMID:20060826) RGD PMID:20060826 NCBI chr12:44,141,258...44,174,701
Ensembl chr12:44,141,422...44,174,583
JBrowse link
G Tlr4 toll-like receptor 4 IEP RGD PMID:20438866 RGD:7777075 NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
JBrowse link
G Tnc tenascin C IEP RGD PMID:10502285 RGD:4889620 NCBI chr 5:79,789,686...79,874,555
Ensembl chr 5:79,789,671...79,874,671
JBrowse link
G Tnf tumor necrosis factor IEP RGD PMID:15602748 RGD:1582142 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Twf2 twinfilin actin-binding protein 2 ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 8:114,897,011...114,909,531
Ensembl chr 8:114,897,011...114,909,531
JBrowse link
G Wnt7b Wnt family member 7B ISO (PMID:12239632), (PMID:12429992) RGD PMID:12239632, PMID:12429992 NCBI chr 7:126,423,418...126,465,724
Ensembl chr 7:126,420,656...126,465,723
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO (MGI:MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:MGI:5317256 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
G Yes1 YES proto-oncogene 1, Src family tyrosine kinase ISO (MGI:MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:MGI:5317256 NCBI chr 9:121,802,471...121,918,906
Ensembl chr 9:121,802,673...121,902,678
JBrowse link
G Zfp105 zinc finger protein 105 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 8:131,998,787...132,009,987
Ensembl chr 8:131,998,778...132,009,981
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    response to stimulus 10583
      response to chemical 6343
        response to oxygen-containing compound 2344
          response to retinoic acid 150
            cellular response to retinoic acid 78
Path 2
Term Annotations click to browse term
  biological_process 20027
    response to stimulus 10583
      response to chemical 6343
        response to organic substance 3865
          response to lipid 1388
            response to retinoic acid 150
              cellular response to retinoic acid 78
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.