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ONTOLOGY REPORT - ANNOTATIONS


Term:response to retinoic acid
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Accession:GO:0032526 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
Synonyms:exact_synonym: response to vitamin A acid



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response to retinoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase IEP RGD PMID:15042712 RGD:1600915 NCBI chr 3:10,162,087...10,182,835
Ensembl chr 3:10,162,096...10,191,423
JBrowse link
G Acer2 alkaline ceramidase 2 involved_in ISO (PMID:18945876) RGD PMID:18945876 NCBI chr 5:101,391,830...101,442,615
Ensembl chr 5:101,391,885...101,442,614
JBrowse link
G Adh1 alcohol dehydrogenase 1C (class I), gamma polypeptide acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:74357|PMID:7748347)
GO_REF:0000107
RGD
Ensembl
PMID:7748347 GO_REF:0000107 MGI:74357 NCBI chr 2:226,797,303...226,808,892
Ensembl chr 2:226,797,303...226,808,892
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEP RGD PMID:11169459 RGD:2306337 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Apoe apolipoprotein E IEP RGD PMID:21907828 RGD:6903285 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
JBrowse link
G Aqp3 aquaporin 3 (Gill blood group) involved_in IEA
ISO
GO_REF:0000107
(PMID:17943189)
Ensembl
RGD
PMID:17943189 GO_REF:0000107 NCBI chr 5:56,239,200...56,244,718
Ensembl chr 5:56,239,201...56,244,720
JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in IEP
ISO
(PMID:12000752) RGD PMID:12000752 PMID:11803116 RGD:704410 NCBI chr 7:21,904,153...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Asxl1 ASXL transcriptional regulator 1 involved_in ISO (MGI:3688807|PMID:16606617) RGD PMID:16606617 MGI:3688807 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538
JBrowse link
G Bmp2 bone morphogenetic protein 2 IEP RGD PMID:8385738 RGD:2289028 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:8385738 RGD:2289028 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp6 bone morphogenetic protein 6 IEP RGD PMID:8385738 RGD:2289028 NCBI chr17:26,318,121...26,469,034
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Cd38 CD38 molecule IEP RGD PMID:11399650 RGD:2307263 NCBI chr14:67,172,062...67,212,328
Ensembl chr14:67,172,063...67,211,986
JBrowse link
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:16322758) RGD PMID:16322758 NCBI chr 8:19,831,874...19,834,640
Ensembl chr 8:19,831,866...19,834,674
JBrowse link
G Clk2 CDC-like kinase 2 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 2:174,570,614...174,582,645
Ensembl chr 2:174,570,653...174,588,985
JBrowse link
G Ctsh cathepsin H involved_in ISS
ISO
GO_REF:0000024
(MGI:3722010|PMID:17500053)
UniProt
RGD
PMID:17500053 GO_REF:0000024 MGI:3722010 NCBI chr 8:90,608,941...90,627,824
Ensembl chr 8:90,608,941...90,627,824
JBrowse link
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 IEP RGD PMID:19497980 RGD:2317621 NCBI chr 1:245,535,462...245,543,148
Ensembl chr 1:245,535,462...245,541,573
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
JBrowse link
G Cyp2c7 cytochrome P450, family 2, subfamily c, polypeptide 7 IEP RGD PMID:9202400 RGD:2301473 NCBI chr 1:237,332,641...237,388,714
Ensembl chr 1:237,332,659...237,388,709
JBrowse link
G Ddx4 DEAD-box helicase 4 IEP
HEP
all-trans retinoic acid RGD PMID:30476341 PMID:30329139 RGD:151893502, RGD:151893506 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3699686|PMID:17064353) RGD PMID:17064353 MGI:3699686 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202
JBrowse link
G Dnaaf2 dynein, axonemal, assembly factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3795829|PMID:18400104)
GO_REF:0000107
RGD
Ensembl
PMID:18400104 GO_REF:0000107 MGI:3795829 NCBI chr 6:87,661,101...87,670,267
Ensembl chr 6:87,660,821...87,670,199
JBrowse link
G Drd1 dopamine receptor D1 IEP RGD PMID:15939542 RGD:7248765 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
JBrowse link
G Dusp1 dual specificity phosphatase 1 IEP RGD PMID:15494319 RGD:2298682 NCBI chr10:16,680,489...16,683,276 JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:17164434 RGD:1642048 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
JBrowse link
G Gata6 GATA binding protein 6 involved_in IEA
ISO
GO_REF:0000107
(PMID:33082341)
Ensembl
RGD
PMID:33082341 GO_REF:0000107 NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
JBrowse link
G Gdap1 ganglioside-induced differentiation-associated-protein 1 acts_upstream_of_or_within ISO (MGI:1335633|PMID:10217254) RGD PMID:10217254 MGI:1335633 NCBI chr 5:1,932,613...1,951,691
Ensembl chr 5:1,932,613...2,030,061
JBrowse link
G Gdap2 ganglioside-induced differentiation-associated-protein 2 acts_upstream_of_or_within ISO (MGI:1335633|PMID:10217254) RGD PMID:10217254 MGI:1335633 NCBI chr 2:187,528,514...187,585,270
Ensembl chr 2:187,528,513...187,585,270
JBrowse link
G Gja1 gap junction protein, alpha 1 IEP RGD PMID:9570757 RGD:11568675 NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
JBrowse link
G Gjb2 gap junction protein, beta 2 IEP RGD PMID:9570757 RGD:11568675 NCBI chr15:31,260,390...31,278,222
Ensembl chr15:31,260,357...31,278,177
JBrowse link
G Hsd17b2 hydroxysteroid (17-beta) dehydrogenase 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:17538076)
Ensembl
RGD
PMID:17538076 GO_REF:0000107 NCBI chr19:45,753,576...45,825,203
Ensembl chr19:45,753,574...45,825,202
JBrowse link
G Igf2r insulin-like growth factor 2 receptor IDA RGD PMID:9811861 RGD:2311629 NCBI chr 1:47,979,109...48,067,501
Ensembl chr 1:47,979,109...48,067,501
JBrowse link
G Igfbp2 insulin-like growth factor binding protein 2 IEP RGD PMID:11880314 RGD:1643103 NCBI chr 9:74,415,574...74,442,945
Ensembl chr 9:74,415,546...74,442,937
JBrowse link
G Igfbp7 insulin-like growth factor binding protein 7 IEP RGD PMID:9886829 RGD:1626580 NCBI chr14:30,737,414...30,797,317
Ensembl chr14:30,737,164...30,797,314
JBrowse link
G Ireb2 iron responsive element binding protein 2 IEP RGD PMID:19877527 RGD:6893274 NCBI chr 8:55,228,080...55,311,613
Ensembl chr 8:55,228,085...55,311,611
JBrowse link
G Klf4 KLF transcription factor 4 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
JBrowse link
G Lefty1 left right determination factor 1 acts_upstream_of_or_within ISO (MGI:1346236|PMID:10500184) RGD PMID:10500184 MGI:1346236 NCBI chr13:92,649,226...92,659,722
Ensembl chr13:92,656,323...92,659,720
JBrowse link
G Lrat lecithin retinol acyltransferase IEP RGD PMID:19700416 RGD:6484694 NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
JBrowse link
G Lrp2 LDL receptor related protein 2 IEP RGD PMID:9541123 RGD:1641848 NCBI chr 3:54,189,305...54,346,769
Ensembl chr 3:54,189,308...54,346,708
JBrowse link
G Map7 microtubule-associated protein 7 acts_upstream_of_or_within ISO MGI:2148221 (MGI:1859100|PMID:10837026) RGD PMID:10837026 MGI:1859100 NCBI chr 1:14,910,433...15,037,574
Ensembl chr 1:14,910,551...15,037,574
JBrowse link
G Mest mesoderm specific transcript involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr 4:59,354,445...59,364,919
Ensembl chr 4:59,354,447...59,366,145
JBrowse link
G Micb MHC class I polypeptide-related sequence B involved_in ISO (PMID:12569559) RGD PMID:12569559 NCBI chr 1:78,495,779...78,513,030
Ensembl chr 1:78,495,779...78,512,827
JBrowse link
G Mmp2 matrix metallopeptidase 2 IEP RGD PMID:19099751 RGD:5129684 NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:19099751 RGD:5129684 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
JBrowse link
G Ncoa1 nuclear receptor coactivator 1 IMP RGD PMID:9808623 RGD:2293532 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664
JBrowse link
G Nr0b1 nuclear receptor subfamily 0, group B, member 1 IEP
HEP
all-trans retinoic acid RGD PMID:30476341 PMID:30329139 RGD:151893502, RGD:151893506 NCBI chr  X:50,756,886...50,761,014
Ensembl chr  X:50,756,886...50,761,011
JBrowse link
G Ovca2 OVCA2 serine hydrolase domain containing involved_in ISO (PMID:11979432) RGD PMID:11979432 NCBI chr10:60,026,048...60,029,211
Ensembl chr10:60,026,048...60,039,850
JBrowse link
G Oxt oxytocin/neurophysin I prepropeptide IEP RGD PMID:15316117 RGD:2304180 NCBI chr 3:117,782,650...117,783,490
Ensembl chr 3:117,782,650...117,783,490
JBrowse link
G Pdgfa platelet derived growth factor subunit A IEP RGD PMID:15315332 RGD:2292166 NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IEP RGD PMID:17303670 RGD:2292175 NCBI chr18:54,500,002...54,538,843
Ensembl chr18:54,499,964...54,538,843
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO
HEP
IEP
(MGI:3795829|PMID:18400104)
all-trans retinoic acid
RGD PMID:18400104 PMID:30329139 PMID:30476341 MGI:3795829, RGD:151893506, RGD:151893502 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Ptch1 patched 1 IEP RGD PMID:17307727 RGD:2303054 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
G Ptges prostaglandin E synthase IEP RGD PMID:18183617 RGD:2300091 NCBI chr 3:14,177,892...14,189,236 JBrowse link
G Rara retinoic acid receptor, alpha involved_in
acts_upstream_of_or_within
ISO (PMID:17538076)
MGI:1857622 (MGI:1931374|PMID:11222375)
RGD PMID:11222375 PMID:17538076 MGI:1931374 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO (PMID:17943189) RGD PMID:17943189 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Rbp1 retinol binding protein 1 IEP
HEP
all-trans retinoic acid RGD PMID:30476341 PMID:30329139 RGD:151893502, RGD:151893506 NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:571335) RGD PMID:571335 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Rnf2 ring finger protein 2 IEP RGD PMID:20515739 RGD:9491842 NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099
JBrowse link
G Rpl36al ribosomal protein L36A-like acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 6:87,654,808...87,656,202
Ensembl chr  X:97,766,179...97,768,892
Ensembl chr10:97,766,179...97,768,892
JBrowse link
G Runx1 RUNX family transcription factor 1 involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542
JBrowse link
G Rxra retinoid X receptor alpha involved_in IEP
IBA
ISO
PMID:21873635
(PMID:17538076)
RGD PMID:17538076 PMID:9555940 PMID:21873635 RGD:1643120, RGD:13792537 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Rxrb retinoid X receptor beta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773
JBrowse link
G Rxrg retinoid X receptor gamma involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:17161848 PMID:21873635 RGD:2325973, RGD:13792537 NCBI chr13:79,743,430...79,785,173
Ensembl chr13:79,743,563...79,785,167
JBrowse link
G Scamp3 secretory carrier membrane protein 3 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 2:174,583,124...174,588,984
Ensembl chr 2:174,570,653...174,588,985
JBrowse link
G Sftpa1 surfactant protein A1 IEP RGD PMID:9505268 RGD:4143481 NCBI chr16:17,008,180...17,011,686
Ensembl chr16:17,008,180...17,011,685
JBrowse link
G Sftpc surfactant protein C IEP RGD PMID:9505268 RGD:4143481 NCBI chr15:45,596,565...45,599,615
Ensembl chr15:45,596,574...45,610,777
JBrowse link
G Shh sonic hedgehog signaling molecule IEP RGD PMID:10633866 RGD:2306310 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Slc10a3 solute carrier family 10, member 3 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr  X:152,154,757...152,158,563
Ensembl chr  X:152,151,076...152,162,958
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Sp100 SP100 nuclear antigen involved_in ISO (PMID:11313457) RGD PMID:11313457 NCBI chr 9:86,310,990...86,377,036
Ensembl chr 9:86,311,032...86,377,034
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 IEP RGD PMID:9121491 RGD:2308848 NCBI chr10:45,007,637...45,029,650
Ensembl chr10:45,007,637...45,029,650
JBrowse link
G Star steroidogenic acute regulatory protein IEP
HEP
all-trans retinoic acid RGD PMID:30476341 PMID:30329139 RGD:151893502, RGD:151893506 NCBI chr16:66,267,094...66,274,368
Ensembl chr16:66,264,807...66,271,672
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 8:58,549,743...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit IEP RGD PMID:20515739 RGD:9491842 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738
JBrowse link
G Synj1 synaptojanin 1 IMP RGD PMID:19282871 RGD:2312448 NCBI chr11:30,192,629...30,269,277
Ensembl chr11:30,192,629...30,269,220
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:5300829|PMID:22186728) RGD PMID:22186728 MGI:5300829 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
JBrowse link
G Tek TEK receptor tyrosine kinase involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr 5:109,607,077...109,733,805
Ensembl chr 5:109,607,077...109,733,804
JBrowse link
G Tfrc transferrin receptor IEP RGD PMID:18029484 RGD:2292030 NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEP RGD PMID:16479313 RGD:2302093 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr 5:132,000,013...132,019,658
Ensembl chr 5:132,000,015...132,019,592
JBrowse link
G Tlr4 toll-like receptor 4 IEP RGD PMID:20438866 RGD:7777075 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tmem161a transmembrane protein 161A involved_in ISO (PMID:16551573) RGD PMID:16551573 NCBI chr16:19,237,638...19,248,151
Ensembl chr16:19,238,487...19,248,087
JBrowse link
G Tp53 tumor protein p53 IEP RGD PMID:17962954 RGD:2290560 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Trim16 tripartite motif-containing 16 involved_in ISO (PMID:16636064) RGD PMID:16636064 NCBI chr10:47,485,982...47,509,010
Ensembl chr10:47,486,297...47,551,907
JBrowse link
G Triml2 tripartite motif family-like 2 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr16:48,944,838...48,955,453
Ensembl chr16:48,944,838...48,955,453
JBrowse link
G Wnt4 Wnt family member 4 IEP
HEP
all-trans retinoic acid RGD PMID:30476341 PMID:30329139 RGD:151893502, RGD:151893506 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859
JBrowse link
cellular response to retinoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (MGI:4411947|PMID:19752193) RGD PMID:19752193 MGI:4411947 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr13:68,673,702...68,839,742
Ensembl chr13:68,673,722...68,839,742
JBrowse link
G Add1 adducin 1 IDA RGD PMID:20493242 RGD:5148002 NCBI chr14:76,108,643...76,167,267
Ensembl chr14:76,108,654...76,167,182
JBrowse link
G Adnp2 ADNP homeobox 2 involved_in ISO (MGI:3793419|PMID:18179478) RGD PMID:18179478 MGI:3793419 NCBI chr18:73,571,870...73,597,088
Ensembl chr18:73,571,936...73,628,484
JBrowse link
G Afp alpha-fetoprotein IEP RGD PMID:7539613 RGD:126790586 NCBI chr14:17,573,412...17,591,476
Ensembl chr14:17,573,412...17,591,480
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within
involved_in
ISO (PMID:18816858)
(MGI:3809313|PMID:18816858)
RGD PMID:18816858 MGI:3809313 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Aqp1 aquaporin 1 involved_in ISO
ISS
(PMID:12051745), (PMID:19424603)
GO_REF:0000024
RGD
UniProt
PMID:12051745 PMID:19424603 GO_REF:0000024 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Atm ATM serine/threonine kinase involved_in ISO (MGI:4837978|PMID:20876357) RGD PMID:20876357 MGI:4837978 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 IEP RGD PMID:8944660 RGD:11576286 NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918
JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 involved_in IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:5521281|PMID:20025061)
Ensembl
RGD
PMID:20025061 PMID:21873635 GO_REF:0000107 MGI:5521281, RGD:13792537 NCBI chr 5:82,348,501...82,550,506
Ensembl chr 5:82,348,930...82,493,150
JBrowse link
G Brinp2 BMP/retinoic acid inducible neural specific 2 involved_in IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:5521281|PMID:20025061)
Ensembl
RGD
PMID:20025061 PMID:21873635 GO_REF:0000107 MGI:5521281, RGD:13792537 NCBI chr13:70,431,006...70,532,766
Ensembl chr13:70,431,010...70,531,810
JBrowse link
G Brinp3 BMP/retinoic acid inducible neural specific 3 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(MGI:5521281|PMID:20025061)
UniProt
RGD
PMID:20025061 PMID:21873635 GO_REF:0000024 MGI:5521281, RGD:13792537 NCBI chr13:58,413,883...58,846,828
Ensembl chr13:58,413,883...58,846,770
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP RGD PMID:11274229 RGD:8549584 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
JBrowse link
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:1921334 PMID:21181362 RGD:2316228, RGD:8552777 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col1a2 collagen type I alpha 2 chain IEP RGD PMID:15234273 RGD:5688233 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP RGD PMID:23810783 RGD:8661241 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Creb1 cAMP responsive element binding protein 1 involved_in ISO (MGI:4837978|PMID:20876357) RGD PMID:20876357 MGI:4837978 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within
involved_in
ISO (PMID:18816858)
(MGI:3809313|PMID:18816858)
RGD PMID:18816858 MGI:3809313 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 acts_upstream_of_or_within
involved_in
ISO (PMID:18816858)
(MGI:3809313|PMID:18816858)
RGD PMID:18816858 MGI:3809313 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
JBrowse link
G Eln elastin IEP RGD PMID:8238530 RGD:9585669 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928
JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:20711222 RGD:7364732 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Epha3 Eph receptor A3 involved_in IEA
ISO
GO_REF:0000107
(PMID:17910947)
Ensembl
RGD
PMID:17910947 GO_REF:0000107 NCBI chr11:1,138,485...1,474,102
Ensembl chr11:1,140,985...1,473,900
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:15389522 RGD:12801431 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Gjb3 gap junction protein, beta 3 IEP RGD PMID:8806447 RGD:12437074 NCBI chr 5:139,649,227...139,655,083
Ensembl chr 5:139,649,195...139,654,980
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO
IEA
(PMID:28122350)
GO_REF:0000107
RGD
Ensembl
PMID:28122350 GO_REF:0000107 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IEP RGD PMID:16619265 RGD:5131544 NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Hdac2 histone deacetylase 2 IEP RGD PMID:19486889 RGD:9590233 NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO (MGI:5500986|PMID:23723417) RGD PMID:23723417 MGI:5500986 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5500986|PMID:23723417)
GO_REF:0000107
RGD
Ensembl
PMID:23723417 GO_REF:0000107 MGI:5500986 Ensembl chr 4:81,262,768...81,265,044 JBrowse link
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:17297443) RGD PMID:17297443 NCBI chr 4:115,556,914...115,560,202
Ensembl chr 4:115,556,916...115,560,095
JBrowse link
G Ireb2 iron responsive element binding protein 2 IEP RGD PMID:22154532 RGD:12904026 NCBI chr 8:55,228,080...55,311,613
Ensembl chr 8:55,228,085...55,311,611
JBrowse link
G Irf1 interferon regulatory factor 1 IEP RGD PMID:15721283 RGD:5128785 NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166
JBrowse link
G Klf4 KLF transcription factor 4 IEP RGD PMID:19486889 RGD:9590233 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
JBrowse link
G Krt13 keratin 13 IEP RGD PMID:7509732 RGD:2316552 NCBI chr10:85,052,122...85,056,032
Ensembl chr10:85,051,889...85,056,084
JBrowse link
G Lep leptin IEP RGD PMID:19212007 RGD:5128705 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Ltk leukocyte receptor tyrosine kinase involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 3:106,734,675...106,741,552
Ensembl chr 3:106,734,676...106,743,369
JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 5:16,639,512...16,755,501
Ensembl chr 5:16,639,466...16,756,868
JBrowse link
G Mef2c myocyte enhancer factor 2C IDA RGD PMID:17568621 RGD:5131615 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Meiosin meiosis initiator involved_in ISO (MGI:6441108|PMID:32032549) RGD PMID:32032549 MGI:6441108 NCBI chr 1:78,744,504...78,768,104
Ensembl chr 1:78,744,983...78,764,977
JBrowse link
G Muc1 mucin 1, cell surface associated IEP RGD PMID:8967520 RGD:633461 NCBI chr 2:174,635,559...174,640,738
Ensembl chr 2:174,635,995...174,640,733
JBrowse link
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming IEP RGD PMID:8967520 RGD:633461 NCBI chr 1:196,864,375...196,896,475
Ensembl chr 1:196,864,336...196,896,475
JBrowse link
G Myb MYB proto-oncogene, transcription factor IEP RGD PMID:8670250 RGD:11532681 NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IEP RGD PMID:12873812 RGD:10059626 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Myog myogenin IEP RGD PMID:1323566 RGD:9686127 NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
JBrowse link
G Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 involved_in ISO (PMID:17297443) RGD PMID:17297443 NCBI chr16:19,526,633...19,533,567
Ensembl chr16:19,526,565...19,535,726
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IEP RGD PMID:10027563 RGD:2325652 NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
JBrowse link
G Orm1 orosomucoid 1 IEP RGD PMID:15157739 RGD:2316642 NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154
JBrowse link
G Osr1 odd-skipped related transcription factor 1 acts_upstream_of_or_within
involved_in
ISO (PMID:20171952)
(MGI:5009359|PMID:20171952)
RGD PMID:20171952 MGI:5009359 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:20171952)
(MGI:5009359|PMID:20171952)
UniProt
RGD
PMID:20171952 GO_REF:0000024 MGI:5009359 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 IEP RGD PMID:21519922 RGD:10428394 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
JBrowse link
G Phb2 prohibitin 2 IEP RGD PMID:25031298 RGD:12903263 NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
JBrowse link
G Phc1 polyhomeotic homolog 1 acts_upstream_of_or_within ISO (MGI:67737|PMID:8070621) RGD PMID:8070621 MGI:67737 NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IEP RGD PMID:10797535 RGD:8553016 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282
JBrowse link
G Ptk6 protein tyrosine kinase 6 involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 3:168,307,073...168,315,664
Ensembl chr 3:168,307,073...168,315,664
JBrowse link
G Ptk7 protein tyrosine kinase 7 involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 9:14,352,155...14,418,494
Ensembl chr 9:14,351,202...14,418,494
JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO (PMID:28122350) RGD PMID:28122350 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IEP
ISO
(MGI:77094|PMID:2157970) RGD PMID:2157970 PMID:11072095 MGI:77094, RGD:1300463 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Ret ret proto-oncogene involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
JBrowse link
G Rhox13 Rhox homeobox family member 13 acts_upstream_of_or_within ISO (MGI:5429829|PMID:22190708) RGD PMID:22190708 MGI:5429829 NCBI chr  X:116,911,157...116,917,938
Ensembl chr  X:116,911,329...116,917,644
JBrowse link
G Rorb RAR-related orphan receptor B involved_in IDA PMID:12958591 UniProt PMID:12958591 RGD:8553609 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
JBrowse link
G Rxrb retinoid X receptor beta involved_in ISO (MGI:4820711|PMID:18922886) RGD PMID:18922886 MGI:4820711 NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773
JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:15051476 RGD:2312357 NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
JBrowse link
G Setx senataxin involved_in ISO (PMID:21576111) RGD PMID:21576111 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Slc6a4 solute carrier family 6 member 4 IEP RGD PMID:17895527 RGD:4889514 NCBI chr10:61,824,208...61,858,924
Ensembl chr10:61,826,123...61,858,384
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEP RGD PMID:10022522 RGD:10448942 NCBI chr 1:95,856,039...95,876,434
Ensembl chr 1:95,856,036...95,876,392
JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:19934264)
(MGI:5315685|PMID:19934264)
RGD PMID:19934264 MGI:5315685 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISO (PMID:12420222)
(MGI:3848572|PMID:19389355)
RGD PMID:12420222 PMID:19389355 MGI:3848572 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Stra8 stimulated by retinoic acid 8 involved_in ISO (MGI:3839158|PMID:19301398), (MGI:6441108|PMID:32032549) RGD PMID:19301398 PMID:32032549 MGI:3839158 MGI:6441108 NCBI chr 4:63,601,443...63,624,777
Ensembl chr 4:63,601,604...63,624,771
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:18816858)
(MGI:3809313|PMID:18816858)
UniProt
RGD
PMID:18816858 GO_REF:0000024 MGI:3809313 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbxt T-box transcription factor T IEP RGD PMID:20507357 RGD:8693647 NCBI chr 1:52,298,099...52,309,813
Ensembl chr 1:52,298,099...52,305,864
JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:5317256 NCBI chr 1:166,791,900...167,010,591
Ensembl chr 1:166,792,628...167,003,369
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:5317256 NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186
JBrowse link
G Tesc tescalcin involved_in ISO (PMID:20060826) RGD PMID:20060826 NCBI chr12:38,521,839...38,555,665
Ensembl chr12:38,521,861...38,555,824
JBrowse link
G Tlr4 toll-like receptor 4 IEP RGD PMID:20438866 RGD:7777075 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tnc tenascin C IEP RGD PMID:10502285 RGD:4889620 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
JBrowse link
G Tnf tumor necrosis factor IEP RGD PMID:15602748 RGD:1582142 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Twf2 twinfilin actin-binding protein 2 involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 8:106,845,253...106,858,298
Ensembl chr 8:106,845,253...106,858,298
JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (PMID:12239632), (PMID:12429992) RGD PMID:12239632 PMID:12429992 NCBI chr 7:116,634,817...116,679,089
Ensembl chr 7:116,634,814...116,679,581
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO (MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:5317256 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
JBrowse link
G Yes1 YES proto-oncogene 1, Src family tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5317256|PMID:21385842)
GO_REF:0000107
RGD
Ensembl
PMID:21385842 GO_REF:0000107 MGI:5317256 NCBI chr 9:113,200,256...113,275,942
Ensembl chr 9:113,200,256...113,299,837
JBrowse link
G Zfp105 zinc finger protein 105 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 8:122,567,229...122,578,696
Ensembl chr 8:122,567,214...122,578,692
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19898
    response to stimulus 10568
      response to chemical 6106
        response to oxygen-containing compound 2578
          response to retinoic acid 161
            cellular response to retinoic acid + 82
Path 2
Term Annotations click to browse term
  biological_process 19898
    response to stimulus 10568
      response to chemical 6106
        response to organic substance 3783
          response to lipid 1435
            response to retinoic acid 161
              cellular response to retinoic acid + 82
paths to the root