ONTOLOGY REPORT - ANNOTATIONS
Term: response to retinoic acid
Accession: GO:0032526
browse the term
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
Synonyms: exact_synonym: response to vitamin A acid
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Abo
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
IEP
RGD
PMID:15042712
RGD:1600915
NCBI chr 3:10,162,087...10,182,835
Ensembl chr 3:10,162,096...10,191,423
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Acer2
alkaline ceramidase 2
involved_in
ISO
(PMID:18945876)
RGD
PMID:18945876
NCBI chr 5:101,391,830...101,442,615
Ensembl chr 5:101,391,885...101,442,614
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Adh1
alcohol dehydrogenase 1C (class I), gamma polypeptide
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:74357|PMID:7748347) GO_REF:0000107
RGD Ensembl
PMID:7748347
GO_REF:0000107 MGI:74357
NCBI chr 2:226,797,303...226,808,892
Ensembl chr 2:226,797,303...226,808,892
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Aldh1a1
aldehyde dehydrogenase 1 family, member A1
IEP
RGD
PMID:11169459
RGD:2306337
NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
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Apoe
apolipoprotein E
IEP
RGD
PMID:21907828
RGD:6903285
NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
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Aqp3
aquaporin 3 (Gill blood group)
involved_in
IEA ISO
GO_REF:0000107 (PMID:17943189)
Ensembl RGD
PMID:17943189
GO_REF:0000107
NCBI chr 5:56,239,200...56,244,718
Ensembl chr 5:56,239,201...56,244,720
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Ascl1
achaete-scute family bHLH transcription factor 1
involved_in
IEP ISO
(PMID:12000752)
RGD
PMID:12000752 PMID:11803116
RGD:704410
NCBI chr 7:21,904,153...21,906,003
Ensembl chr 7:21,903,126...21,905,993
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Asxl1
ASXL transcriptional regulator 1
involved_in
ISO
(MGI:3688807|PMID:16606617)
RGD
PMID:16606617
MGI:3688807
NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538
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Bmp2
bone morphogenetic protein 2
IEP
RGD
PMID:8385738
RGD:2289028
NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
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Bmp4
bone morphogenetic protein 4
IEP
RGD
PMID:8385738
RGD:2289028
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
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Bmp6
bone morphogenetic protein 6
IEP
RGD
PMID:8385738
RGD:2289028
NCBI chr17:26,318,121...26,469,034
Ensembl chr17:26,318,569...26,470,365
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Cd38
CD38 molecule
IEP
RGD
PMID:11399650
RGD:2307263
NCBI chr14:67,172,062...67,212,328
Ensembl chr14:67,172,063...67,211,986
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Cdkn2d
cyclin dependent kinase inhibitor 2D
involved_in
ISO
(PMID:16322758)
RGD
PMID:16322758
NCBI chr 8:19,831,874...19,834,640
Ensembl chr 8:19,831,866...19,834,674
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Clk2
CDC-like kinase 2
acts_upstream_of_or_within
ISO
(MGI:3795829|PMID:18400104)
RGD
PMID:18400104
MGI:3795829
NCBI chr 2:174,570,614...174,582,645
Ensembl chr 2:174,570,653...174,588,985
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Ctsh
cathepsin H
involved_in
ISS ISO
GO_REF:0000024 (MGI:3722010|PMID:17500053)
UniProt RGD
PMID:17500053
GO_REF:0000024 MGI:3722010
NCBI chr 8:90,608,941...90,627,824
Ensembl chr 8:90,608,941...90,627,824
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Cyp17a1
cytochrome P450, family 17, subfamily a, polypeptide 1
IEP
RGD
PMID:19497980
RGD:2317621
NCBI chr 1:245,535,462...245,543,148
Ensembl chr 1:245,535,462...245,541,573
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Cyp26a1
cytochrome P450, family 26, subfamily a, polypeptide 1
IEP
RGD
PMID:19700416
RGD:6484694
NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
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Cyp26b1
cytochrome P450, family 26, subfamily b, polypeptide 1
IEP
RGD
PMID:19700416
RGD:6484694
NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
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Cyp2c7
cytochrome P450, family 2, subfamily c, polypeptide 7
IEP
RGD
PMID:9202400
RGD:2301473
NCBI chr 1:237,332,641...237,388,714
Ensembl chr 1:237,332,659...237,388,709
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Ddx4
DEAD-box helicase 4
IEP HEP
all-trans retinoic acid
RGD
PMID:30476341 PMID:30329139
RGD:151893502 , RGD:151893506
NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723
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Dkk1
dickkopf WNT signaling pathway inhibitor 1
acts_upstream_of_or_within
ISO
(MGI:3699686|PMID:17064353)
RGD
PMID:17064353
MGI:3699686
NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202
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Dnaaf2
dynein, axonemal, assembly factor 2
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:3795829|PMID:18400104) GO_REF:0000107
RGD Ensembl
PMID:18400104
GO_REF:0000107 MGI:3795829
NCBI chr 6:87,661,101...87,670,267
Ensembl chr 6:87,660,821...87,670,199
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Drd1
dopamine receptor D1
IEP
RGD
PMID:15939542
RGD:7248765
NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
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Dusp1
dual specificity phosphatase 1
IEP
RGD
PMID:15494319
RGD:2298682
NCBI chr10:16,680,489...16,683,276
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Ep300
E1A binding protein p300
IEP
RGD
PMID:17164434
RGD:1642048
NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Gata4
GATA binding protein 4
involved_in
ISO
(MGI:3799604|PMID:18439490)
RGD
PMID:18439490
MGI:3799604
NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
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Gata6
GATA binding protein 6
involved_in
IEA ISO
GO_REF:0000107 (PMID:33082341)
Ensembl RGD
PMID:33082341
GO_REF:0000107
NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
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Gdap1
ganglioside-induced differentiation-associated-protein 1
acts_upstream_of_or_within
ISO
(MGI:1335633|PMID:10217254)
RGD
PMID:10217254
MGI:1335633
NCBI chr 5:1,932,613...1,951,691
Ensembl chr 5:1,932,613...2,030,061
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Gdap2
ganglioside-induced differentiation-associated-protein 2
acts_upstream_of_or_within
ISO
(MGI:1335633|PMID:10217254)
RGD
PMID:10217254
MGI:1335633
NCBI chr 2:187,528,514...187,585,270
Ensembl chr 2:187,528,513...187,585,270
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Gja1
gap junction protein, alpha 1
IEP
RGD
PMID:9570757
RGD:11568675
NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
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Gjb2
gap junction protein, beta 2
IEP
RGD
PMID:9570757
RGD:11568675
NCBI chr15:31,260,390...31,278,222
Ensembl chr15:31,260,357...31,278,177
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Hsd17b2
hydroxysteroid (17-beta) dehydrogenase 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:17538076)
Ensembl RGD
PMID:17538076
GO_REF:0000107
NCBI chr19:45,753,576...45,825,203
Ensembl chr19:45,753,574...45,825,202
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Igf2r
insulin-like growth factor 2 receptor
IDA
RGD
PMID:9811861
RGD:2311629
NCBI chr 1:47,979,109...48,067,501
Ensembl chr 1:47,979,109...48,067,501
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Igfbp2
insulin-like growth factor binding protein 2
IEP
RGD
PMID:11880314
RGD:1643103
NCBI chr 9:74,415,574...74,442,945
Ensembl chr 9:74,415,546...74,442,937
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Igfbp7
insulin-like growth factor binding protein 7
IEP
RGD
PMID:9886829
RGD:1626580
NCBI chr14:30,737,414...30,797,317
Ensembl chr14:30,737,164...30,797,314
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Ireb2
iron responsive element binding protein 2
IEP
RGD
PMID:19877527
RGD:6893274
NCBI chr 8:55,228,080...55,311,613
Ensembl chr 8:55,228,085...55,311,611
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Klf4
KLF transcription factor 4
acts_upstream_of_or_within
ISO
(MGI:3795829|PMID:18400104)
RGD
PMID:18400104
MGI:3795829
NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
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Lefty1
left right determination factor 1
acts_upstream_of_or_within
ISO
(MGI:1346236|PMID:10500184)
RGD
PMID:10500184
MGI:1346236
NCBI chr13:92,649,226...92,659,722
Ensembl chr13:92,656,323...92,659,720
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Lrat
lecithin retinol acyltransferase
IEP
RGD
PMID:19700416
RGD:6484694
NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
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Lrp2
LDL receptor related protein 2
IEP
RGD
PMID:9541123
RGD:1641848
NCBI chr 3:54,189,305...54,346,769
Ensembl chr 3:54,189,308...54,346,708
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Map7
microtubule-associated protein 7
acts_upstream_of_or_within
ISO
MGI:2148221 (MGI:1859100|PMID:10837026)
RGD
PMID:10837026
MGI:1859100
NCBI chr 1:14,910,433...15,037,574
Ensembl chr 1:14,910,551...15,037,574
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Mest
mesoderm specific transcript
involved_in
ISO
(MGI:3799604|PMID:18439490)
RGD
PMID:18439490
MGI:3799604
NCBI chr 4:59,354,445...59,364,919
Ensembl chr 4:59,354,447...59,366,145
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Micb
MHC class I polypeptide-related sequence B
involved_in
ISO
(PMID:12569559)
RGD
PMID:12569559
NCBI chr 1:78,495,779...78,513,030
Ensembl chr 1:78,495,779...78,512,827
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Mmp2
matrix metallopeptidase 2
IEP
RGD
PMID:19099751
RGD:5129684
NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
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Mmp9
matrix metallopeptidase 9
IEP
RGD
PMID:19099751
RGD:5129684
NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
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Nanog
Nanog homeobox
acts_upstream_of_or_within
ISO
(MGI:3795829|PMID:18400104)
RGD
PMID:18400104
MGI:3795829
NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
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Ncoa1
nuclear receptor coactivator 1
IMP
RGD
PMID:9808623
RGD:2293532
NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664
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Nr0b1
nuclear receptor subfamily 0, group B, member 1
IEP HEP
all-trans retinoic acid
RGD
PMID:30476341 PMID:30329139
RGD:151893502 , RGD:151893506
NCBI chr X:50,756,886...50,761,014
Ensembl chr X:50,756,886...50,761,011
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Ovca2
OVCA2 serine hydrolase domain containing
involved_in
ISO
(PMID:11979432)
RGD
PMID:11979432
NCBI chr10:60,026,048...60,029,211
Ensembl chr10:60,026,048...60,039,850
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Oxt
oxytocin/neurophysin I prepropeptide
IEP
RGD
PMID:15316117
RGD:2304180
NCBI chr 3:117,782,650...117,783,490
Ensembl chr 3:117,782,650...117,783,490
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Pdgfa
platelet derived growth factor subunit A
IEP
RGD
PMID:15315332
RGD:2292166
NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497
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Pdgfrb
platelet derived growth factor receptor beta
IEP
RGD
PMID:17303670
RGD:2292175
NCBI chr18:54,500,002...54,538,843
Ensembl chr18:54,499,964...54,538,843
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Pou5f1
POU class 5 homeobox 1
acts_upstream_of_or_within
ISO HEP IEP
(MGI:3795829|PMID:18400104) all-trans retinoic acid
RGD
PMID:18400104 PMID:30329139 PMID:30476341
MGI:3795829 , RGD:151893506 , RGD:151893502
NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
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Ptch1
patched 1
IEP
RGD
PMID:17307727
RGD:2303054
NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
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Ptges
prostaglandin E synthase
IEP
RGD
PMID:18183617
RGD:2300091
NCBI chr 3:14,177,892...14,189,236
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Rara
retinoic acid receptor, alpha
involved_in acts_upstream_of_or_within
ISO
(PMID:17538076) MGI:1857622 (MGI:1931374|PMID:11222375)
RGD
PMID:11222375 PMID:17538076
MGI:1931374
NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
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Rarg
retinoic acid receptor, gamma
involved_in
ISO
(PMID:17943189)
RGD
PMID:17943189
NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
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Rbp1
retinol binding protein 1
IEP HEP
all-trans retinoic acid
RGD
PMID:30476341 PMID:30329139
RGD:151893502 , RGD:151893506
NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
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Rbp4
retinol binding protein 4
involved_in
ISO
(PMID:571335)
RGD
PMID:571335
NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
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Rnf2
ring finger protein 2
IEP
RGD
PMID:20515739
RGD:9491842
NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099
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Rpl36al
ribosomal protein L36A-like
acts_upstream_of_or_within
ISO
(MGI:3795829|PMID:18400104)
RGD
PMID:18400104
MGI:3795829
NCBI chr 6:87,654,808...87,656,202
Ensembl chr X:97,766,179...97,768,892 Ensembl chr10:97,766,179...97,768,892
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Runx1
RUNX family transcription factor 1
involved_in
ISO
(MGI:3799604|PMID:18439490)
RGD
PMID:18439490
MGI:3799604
NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542
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Rxra
retinoid X receptor alpha
involved_in
IEP IBA ISO
PMID:21873635 (PMID:17538076)
RGD
PMID:17538076 PMID:9555940 PMID:21873635
RGD:1643120 , RGD:13792537
NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
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Rxrb
retinoid X receptor beta
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773
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Rxrg
retinoid X receptor gamma
involved_in
IEP IBA
PMID:21873635
RGD GO_Central
PMID:17161848 PMID:21873635
RGD:2325973 , RGD:13792537
NCBI chr13:79,743,430...79,785,173
Ensembl chr13:79,743,563...79,785,167
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Scamp3
secretory carrier membrane protein 3
acts_upstream_of_or_within
ISO
(MGI:3795829|PMID:18400104)
RGD
PMID:18400104
MGI:3795829
NCBI chr 2:174,583,124...174,588,984
Ensembl chr 2:174,570,653...174,588,985
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Sftpa1
surfactant protein A1
IEP
RGD
PMID:9505268
RGD:4143481
NCBI chr16:17,008,180...17,011,686
Ensembl chr16:17,008,180...17,011,685
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Sftpc
surfactant protein C
IEP
RGD
PMID:9505268
RGD:4143481
NCBI chr15:45,596,565...45,599,615
Ensembl chr15:45,596,574...45,610,777
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Shh
sonic hedgehog signaling molecule
IEP
RGD
PMID:10633866
RGD:2306310
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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Slc10a3
solute carrier family 10, member 3
acts_upstream_of_or_within
ISO
(MGI:3795829|PMID:18400104)
RGD
PMID:18400104
MGI:3795829
NCBI chr X:152,154,757...152,158,563
Ensembl chr X:152,151,076...152,162,958
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Sox2
SRY-box transcription factor 2
acts_upstream_of_or_within
ISO
(MGI:3795829|PMID:18400104)
RGD
PMID:18400104
MGI:3795829
NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
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Sp100
SP100 nuclear antigen
involved_in
ISO
(PMID:11313457)
RGD
PMID:11313457
NCBI chr 9:86,310,990...86,377,036
Ensembl chr 9:86,311,032...86,377,034
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Srebf1
sterol regulatory element binding transcription factor 1
IEP
RGD
PMID:9121491
RGD:2308848
NCBI chr10:45,007,637...45,029,650
Ensembl chr10:45,007,637...45,029,650
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Star
steroidogenic acute regulatory protein
IEP HEP
all-trans retinoic acid
RGD
PMID:30476341 PMID:30329139
RGD:151893502 , RGD:151893506
NCBI chr16:66,267,094...66,274,368
Ensembl chr16:66,264,807...66,271,672
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Stra6
signaling receptor and transporter of retinol STRA6
IEP
RGD
PMID:19700416
RGD:6484694
NCBI chr 8:58,549,743...58,568,861
Ensembl chr 8:58,549,736...58,568,860
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Suz12
SUZ12 polycomb repressive complex 2 subunit
IEP
RGD
PMID:20515739
RGD:9491842
NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738
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Synj1
synaptojanin 1
IMP
RGD
PMID:19282871
RGD:2312448
NCBI chr11:30,192,629...30,269,277
Ensembl chr11:30,192,629...30,269,220
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Tbx2
T-box transcription factor 2
involved_in
ISO
(MGI:5300829|PMID:22186728)
RGD
PMID:22186728
MGI:5300829
NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
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Tek
TEK receptor tyrosine kinase
involved_in
ISO
(MGI:3799604|PMID:18439490)
RGD
PMID:18439490
MGI:3799604
NCBI chr 5:109,607,077...109,733,805
Ensembl chr 5:109,607,077...109,733,804
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Tfrc
transferrin receptor
IEP
RGD
PMID:18029484
RGD:2292030
NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257
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Tgfb2
transforming growth factor, beta 2
IEP
RGD
PMID:16479313
RGD:2302093
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
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Tie1
tyrosine kinase with immunoglobulin-like and EGF-like domains 1
involved_in
ISO
(MGI:3799604|PMID:18439490)
RGD
PMID:18439490
MGI:3799604
NCBI chr 5:132,000,013...132,019,658
Ensembl chr 5:132,000,015...132,019,592
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Tlr4
toll-like receptor 4
IEP
RGD
PMID:20438866
RGD:7777075
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Tmem161a
transmembrane protein 161A
involved_in
ISO
(PMID:16551573)
RGD
PMID:16551573
NCBI chr16:19,237,638...19,248,151
Ensembl chr16:19,238,487...19,248,087
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Tp53
tumor protein p53
IEP
RGD
PMID:17962954
RGD:2290560
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
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Trim16
tripartite motif-containing 16
involved_in
ISO
(PMID:16636064)
RGD
PMID:16636064
NCBI chr10:47,485,982...47,509,010
Ensembl chr10:47,486,297...47,551,907
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Triml2
tripartite motif family-like 2
acts_upstream_of_or_within
ISO
(MGI:3795829|PMID:18400104)
RGD
PMID:18400104
MGI:3795829
NCBI chr16:48,944,838...48,955,453
Ensembl chr16:48,944,838...48,955,453
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Wnt4
Wnt family member 4
IEP HEP
all-trans retinoic acid
RGD
PMID:30476341 PMID:30329139
RGD:151893502 , RGD:151893506
NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859
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Abca1
ATP binding cassette subfamily A member 1
involved_in
ISO
(MGI:4411947|PMID:19752193)
RGD
PMID:19752193
MGI:4411947
NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
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Abl2
ABL proto-oncogene 2, non-receptor tyrosine kinase
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr13:68,673,702...68,839,742
Ensembl chr13:68,673,722...68,839,742
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Add1
adducin 1
IDA
RGD
PMID:20493242
RGD:5148002
NCBI chr14:76,108,643...76,167,267
Ensembl chr14:76,108,654...76,167,182
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Adnp2
ADNP homeobox 2
involved_in
ISO
(MGI:3793419|PMID:18179478)
RGD
PMID:18179478
MGI:3793419
NCBI chr18:73,571,870...73,597,088
Ensembl chr18:73,571,936...73,628,484
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Afp
alpha-fetoprotein
IEP
RGD
PMID:7539613
RGD:126790586
NCBI chr14:17,573,412...17,591,476
Ensembl chr14:17,573,412...17,591,480
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
acts_upstream_of_or_within involved_in
ISO
(PMID:18816858) (MGI:3809313|PMID:18816858)
RGD
PMID:18816858
MGI:3809313
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
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Aqp1
aquaporin 1
involved_in
ISO ISS
(PMID:12051745), (PMID:19424603) GO_REF:0000024
RGD UniProt
PMID:12051745 PMID:19424603
GO_REF:0000024
NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
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Atm
ATM serine/threonine kinase
involved_in
ISO
(MGI:4837978|PMID:20876357)
RGD
PMID:20876357
MGI:4837978
NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
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Atp1a3
ATPase Na+/K+ transporting subunit alpha 3
IEP
RGD
PMID:8944660
RGD:11576286
NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918
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Brinp1
BMP/retinoic acid inducible neural specific 1
involved_in
IEA IBA ISO
GO_REF:0000107 PMID:21873635 (MGI:5521281|PMID:20025061)
Ensembl RGD
PMID:20025061 PMID:21873635
GO_REF:0000107 MGI:5521281 , RGD:13792537
NCBI chr 5:82,348,501...82,550,506
Ensembl chr 5:82,348,930...82,493,150
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Brinp2
BMP/retinoic acid inducible neural specific 2
involved_in
IEA IBA ISO
GO_REF:0000107 PMID:21873635 (MGI:5521281|PMID:20025061)
Ensembl RGD
PMID:20025061 PMID:21873635
GO_REF:0000107 MGI:5521281 , RGD:13792537
NCBI chr13:70,431,006...70,532,766
Ensembl chr13:70,431,010...70,531,810
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Brinp3
BMP/retinoic acid inducible neural specific 3
involved_in
IBA ISS ISO
PMID:21873635 GO_REF:0000024 (MGI:5521281|PMID:20025061)
UniProt RGD
PMID:20025061 PMID:21873635
GO_REF:0000024 MGI:5521281 , RGD:13792537
NCBI chr13:58,413,883...58,846,828
Ensembl chr13:58,413,883...58,846,770
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Ccl2
C-C motif chemokine ligand 2
IEP
RGD
PMID:11274229
RGD:8549584
NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
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Col1a1
collagen type I alpha 1 chain
IEP
RGD
PMID:1921334 PMID:21181362
RGD:2316228 , RGD:8552777
NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
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Col1a2
collagen type I alpha 2 chain
IEP
RGD
PMID:15234273
RGD:5688233
NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
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Col2a1
collagen type II alpha 1 chain
IEP
RGD
PMID:23810783
RGD:8661241
NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
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Creb1
cAMP responsive element binding protein 1
involved_in
ISO
(MGI:4837978|PMID:20876357)
RGD
PMID:20876357
MGI:4837978
NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
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Cyp26a1
cytochrome P450, family 26, subfamily a, polypeptide 1
acts_upstream_of_or_within involved_in
ISO
(PMID:18816858) (MGI:3809313|PMID:18816858)
RGD
PMID:18816858
MGI:3809313
NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
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Cyp26b1
cytochrome P450, family 26, subfamily b, polypeptide 1
acts_upstream_of_or_within involved_in
ISO
(PMID:18816858) (MGI:3809313|PMID:18816858)
RGD
PMID:18816858
MGI:3809313
NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
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Eln
elastin
IEP
RGD
PMID:8238530
RGD:9585669
NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928
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Ep300
E1A binding protein p300
IEP
RGD
PMID:20711222
RGD:7364732
NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Epha3
Eph receptor A3
involved_in
IEA ISO
GO_REF:0000107 (PMID:17910947)
Ensembl RGD
PMID:17910947
GO_REF:0000107
NCBI chr11:1,138,485...1,474,102
Ensembl chr11:1,140,985...1,473,900
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Fgfr2
fibroblast growth factor receptor 2
IEP
RGD
PMID:15389522
RGD:12801431
NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
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Gjb3
gap junction protein, beta 3
IEP
RGD
PMID:8806447
RGD:12437074
NCBI chr 5:139,649,227...139,655,083
Ensembl chr 5:139,649,195...139,654,980
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Gsk3b
glycogen synthase kinase 3 beta
involved_in
ISO IEA
(PMID:28122350) GO_REF:0000107
RGD Ensembl
PMID:28122350
GO_REF:0000107
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
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Hand2
heart and neural crest derivatives expressed 2
IEP
RGD
PMID:16619265
RGD:5131544
NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
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Hdac2
histone deacetylase 2
IEP
RGD
PMID:19486889
RGD:9590233
NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609
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Hoxa1
homeobox A1
acts_upstream_of_or_within
ISO
(MGI:5500986|PMID:23723417)
RGD
PMID:23723417
MGI:5500986
NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504
G
Hoxa2
homeobox A2
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:5500986|PMID:23723417) GO_REF:0000107
RGD Ensembl
PMID:23723417
GO_REF:0000107 MGI:5500986
Ensembl chr 4:81,262,768...81,265,044
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Htra2
HtrA serine peptidase 2
involved_in
ISO
(PMID:17297443)
RGD
PMID:17297443
NCBI chr 4:115,556,914...115,560,202
Ensembl chr 4:115,556,916...115,560,095
G
Ireb2
iron responsive element binding protein 2
IEP
RGD
PMID:22154532
RGD:12904026
NCBI chr 8:55,228,080...55,311,613
Ensembl chr 8:55,228,085...55,311,611
G
Irf1
interferon regulatory factor 1
IEP
RGD
PMID:15721283
RGD:5128785
NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166
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Klf4
KLF transcription factor 4
IEP
RGD
PMID:19486889
RGD:9590233
NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
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Krt13
keratin 13
IEP
RGD
PMID:7509732
RGD:2316552
NCBI chr10:85,052,122...85,056,032
Ensembl chr10:85,051,889...85,056,084
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Lep
leptin
IEP
RGD
PMID:19212007
RGD:5128705
NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
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Ltk
leukocyte receptor tyrosine kinase
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 3:106,734,675...106,741,552
Ensembl chr 3:106,734,676...106,743,369
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Lyn
LYN proto-oncogene, Src family tyrosine kinase
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 5:16,639,512...16,755,501
Ensembl chr 5:16,639,466...16,756,868
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Mef2c
myocyte enhancer factor 2C
IDA
RGD
PMID:17568621
RGD:5131615
NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
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Meiosin
meiosis initiator
involved_in
ISO
(MGI:6441108|PMID:32032549)
RGD
PMID:32032549
MGI:6441108
NCBI chr 1:78,744,504...78,768,104
Ensembl chr 1:78,744,983...78,764,977
G
Muc1
mucin 1, cell surface associated
IEP
RGD
PMID:8967520
RGD:633461
NCBI chr 2:174,635,559...174,640,738
Ensembl chr 2:174,635,995...174,640,733
G
Muc5ac
mucin 5AC, oligomeric mucus/gel-forming
IEP
RGD
PMID:8967520
RGD:633461
NCBI chr 1:196,864,375...196,896,475
Ensembl chr 1:196,864,336...196,896,475
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Myb
MYB proto-oncogene, transcription factor
IEP
RGD
PMID:8670250
RGD:11532681
NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
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Myc
MYC proto-oncogene, bHLH transcription factor
IEP
RGD
PMID:12873812
RGD:10059626
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
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Myog
myogenin
IEP
RGD
PMID:1323566
RGD:9686127
NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
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Ndufa13
NADH:ubiquinone oxidoreductase subunit A13
involved_in
ISO
(PMID:17297443)
RGD
PMID:17297443
NCBI chr16:19,526,633...19,533,567
Ensembl chr16:19,526,565...19,535,726
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Ntrk3
neurotrophic receptor tyrosine kinase 3
IEP
RGD
PMID:10027563
RGD:2325652
NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
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Orm1
orosomucoid 1
IEP
RGD
PMID:15157739
RGD:2316642
NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154
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Osr1
odd-skipped related transcription factor 1
acts_upstream_of_or_within involved_in
ISO
(PMID:20171952) (MGI:5009359|PMID:20171952)
RGD
PMID:20171952
MGI:5009359
NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
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Pax2
paired box 2
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 (PMID:20171952) (MGI:5009359|PMID:20171952)
UniProt RGD
PMID:20171952
GO_REF:0000024 MGI:5009359
NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
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Pck1
phosphoenolpyruvate carboxykinase 1
IEP
RGD
PMID:21519922
RGD:10428394
NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
G
Phb2
prohibitin 2
IEP
RGD
PMID:25031298
RGD:12903263
NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
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Phc1
polyhomeotic homolog 1
acts_upstream_of_or_within
ISO
(MGI:67737|PMID:8070621)
RGD
PMID:8070621
MGI:67737
NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959
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Pparg
peroxisome proliferator-activated receptor gamma
IEP
RGD
PMID:10797535
RGD:8553016
NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
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Ptk2b
protein tyrosine kinase 2 beta
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282
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Ptk6
protein tyrosine kinase 6
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 3:168,307,073...168,315,664
Ensembl chr 3:168,307,073...168,315,664
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Ptk7
protein tyrosine kinase 7
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 9:14,352,155...14,418,494
Ensembl chr 9:14,351,202...14,418,494
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Rara
retinoic acid receptor, alpha
involved_in
ISO
(PMID:28122350)
RGD
PMID:28122350
NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
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Rarg
retinoic acid receptor, gamma
acts_upstream_of_or_within
IEP ISO
(MGI:77094|PMID:2157970)
RGD
PMID:2157970 PMID:11072095
MGI:77094 , RGD:1300463
NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
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Ret
ret proto-oncogene
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
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Rhox13
Rhox homeobox family member 13
acts_upstream_of_or_within
ISO
(MGI:5429829|PMID:22190708)
RGD
PMID:22190708
MGI:5429829
NCBI chr X:116,911,157...116,917,938
Ensembl chr X:116,911,329...116,917,644
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Rorb
RAR-related orphan receptor B
involved_in
IDA
PMID:12958591
UniProt
PMID:12958591
RGD:8553609
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
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Rxrb
retinoid X receptor beta
involved_in
ISO
(MGI:4820711|PMID:18922886)
RGD
PMID:18922886
MGI:4820711
NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773
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Serpinf1
serpin family F member 1
IEP
RGD
PMID:15051476
RGD:2312357
NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
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Setx
senataxin
involved_in
ISO
(PMID:21576111)
RGD
PMID:21576111
NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
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Slc6a4
solute carrier family 6 member 4
IEP
RGD
PMID:17895527
RGD:4889514
NCBI chr10:61,824,208...61,858,924
Ensembl chr10:61,826,123...61,858,384
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Snrnp70
small nuclear ribonucleoprotein U1 subunit 70
IEP
RGD
PMID:10022522
RGD:10448942
NCBI chr 1:95,856,039...95,876,434
Ensembl chr 1:95,856,036...95,876,392
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Snw1
SNW domain containing 1
involved_in
ISO
(PMID:19934264) (MGI:5315685|PMID:19934264)
RGD
PMID:19934264
MGI:5315685
NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
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Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISO
(PMID:12420222) (MGI:3848572|PMID:19389355)
RGD
PMID:12420222 PMID:19389355
MGI:3848572
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
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Stra8
stimulated by retinoic acid 8
involved_in
ISO
(MGI:3839158|PMID:19301398), (MGI:6441108|PMID:32032549)
RGD
PMID:19301398 PMID:32032549
MGI:3839158 MGI:6441108
NCBI chr 4:63,601,443...63,624,777
Ensembl chr 4:63,601,604...63,624,771
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Tbx1
T-box transcription factor 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 (PMID:18816858) (MGI:3809313|PMID:18816858)
UniProt RGD
PMID:18816858
GO_REF:0000024 MGI:3809313
NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
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Tbxt
T-box transcription factor T
IEP
RGD
PMID:20507357
RGD:8693647
NCBI chr 1:52,298,099...52,309,813
Ensembl chr 1:52,298,099...52,305,864
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Tead1
TEA domain transcription factor 1
acts_upstream_of_or_within
ISO
(MGI:5317256|PMID:21385842)
RGD
PMID:21385842
MGI:5317256
NCBI chr 1:166,791,900...167,010,591
Ensembl chr 1:166,792,628...167,003,369
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Tead2
TEA domain transcription factor 2
acts_upstream_of_or_within
ISO
(MGI:5317256|PMID:21385842)
RGD
PMID:21385842
MGI:5317256
NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186
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Tesc
tescalcin
involved_in
ISO
(PMID:20060826)
RGD
PMID:20060826
NCBI chr12:38,521,839...38,555,665
Ensembl chr12:38,521,861...38,555,824
G
Tlr4
toll-like receptor 4
IEP
RGD
PMID:20438866
RGD:7777075
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Tnc
tenascin C
IEP
RGD
PMID:10502285
RGD:4889620
NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
G
Tnf
tumor necrosis factor
IEP
RGD
PMID:15602748
RGD:1582142
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
G
Twf2
twinfilin actin-binding protein 2
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 8:106,845,253...106,858,298
Ensembl chr 8:106,845,253...106,858,298
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Wnt7b
Wnt family member 7B
involved_in
ISO
(PMID:12239632), (PMID:12429992)
RGD
PMID:12239632 PMID:12429992
NCBI chr 7:116,634,817...116,679,089
Ensembl chr 7:116,634,814...116,679,581
G
Yap1
Yes1 associated transcriptional regulator
acts_upstream_of_or_within
ISO
(MGI:5317256|PMID:21385842)
RGD
PMID:21385842
MGI:5317256
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
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Yes1
YES proto-oncogene 1, Src family tyrosine kinase
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:5317256|PMID:21385842) GO_REF:0000107
RGD Ensembl
PMID:21385842
GO_REF:0000107 MGI:5317256
NCBI chr 9:113,200,256...113,275,942
Ensembl chr 9:113,200,256...113,299,837
G
Zfp105
zinc finger protein 105
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 8:122,567,229...122,578,696
Ensembl chr 8:122,567,214...122,578,692
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all