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ONTOLOGY REPORT - ANNOTATIONS


Term:response to retinoic acid
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Accession:GO:0032526 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
Synonyms:exact_synonym: response to vitamin A acid



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response to retinoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase IEP RGD PMID:15042712 RGD:1600915 NCBI chr 3:10,162,087...10,182,835
Ensembl chr 3:10,162,096...10,191,423
JBrowse link
G Acer2 alkaline ceramidase 2 involved_in ISO (PMID:18945876) RGD PMID:18945876 NCBI chr 5:101,391,830...101,442,615
Ensembl chr 5:101,391,885...101,442,614
JBrowse link
G Adh1 alcohol dehydrogenase 1 (class I) acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:74357|PMID:7748347)
GO_REF:0000107
RGD
Ensembl
PMID:7748347 GO_REF:0000107 MGI:74357 NCBI chr 2:226,797,303...226,808,892
Ensembl chr 2:226,797,303...226,808,892
JBrowse link
G Adh6 alcohol dehydrogenase 6 (class V) involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:226,903,208...226,934,564
Ensembl chr 2:226,903,250...226,934,534
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEP RGD PMID:11169459 RGD:2306337 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Apoe apolipoprotein E IEP RGD PMID:21907828 RGD:6903285 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
JBrowse link
G Aqp3 aquaporin 3 (Gill blood group) involved_in IEA
ISO
GO_REF:0000107
(PMID:17943189)
Ensembl
RGD
PMID:17943189 GO_REF:0000107 NCBI chr 5:56,239,200...56,244,718
Ensembl chr 5:56,239,201...56,244,720
JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in IEP
ISO
(PMID:12000752) RGD PMID:12000752 PMID:11803116 RGD:704410 NCBI chr 7:21,904,153...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Asxl1 ASXL transcriptional regulator 1 involved_in ISO (MGI:3688807|PMID:16606617) RGD PMID:16606617 MGI:3688807 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538
JBrowse link
G Bmp2 bone morphogenetic protein 2 IEP RGD PMID:8385738 RGD:2289028 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:8385738 RGD:2289028 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp6 bone morphogenetic protein 6 IEP RGD PMID:8385738 RGD:2289028 NCBI chr17:26,318,121...26,469,034
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Cd38 CD38 molecule IEP RGD PMID:11399650 RGD:2307263 NCBI chr14:67,172,062...67,212,328
Ensembl chr14:67,172,063...67,211,986
JBrowse link
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:16322758) RGD PMID:16322758 NCBI chr 8:19,831,874...19,834,640
Ensembl chr 8:19,831,866...19,834,674
JBrowse link
G Clk2 CDC-like kinase 2 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 2:174,570,614...174,582,645 JBrowse link
G Ctsh cathepsin H involved_in ISS
ISO
GO_REF:0000024
(MGI:3722010|PMID:17500053)
UniProt
RGD
PMID:17500053 GO_REF:0000024 MGI:3722010 NCBI chr 8:90,608,941...90,627,824
Ensembl chr 8:90,608,941...90,627,824
JBrowse link
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 IEP RGD PMID:19497980 RGD:2317621 NCBI chr 1:245,535,462...245,543,148
Ensembl chr 1:245,535,462...245,541,573
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
JBrowse link
G Cyp2c7 cytochrome P450, family 2, subfamily c, polypeptide 7 IEP RGD PMID:9202400 RGD:2301473 NCBI chr 1:237,332,641...237,388,714
Ensembl chr 1:237,332,659...237,388,709
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3699686|PMID:17064353) RGD PMID:17064353 MGI:3699686 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202
JBrowse link
G Dnaaf2 dynein, axonemal, assembly factor 2 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 6:87,661,101...87,670,267
Ensembl chr 6:87,660,821...87,670,199
JBrowse link
G Drd1 dopamine receptor D1 IEP RGD PMID:15939542 RGD:7248765 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
JBrowse link
G Dusp1 dual specificity phosphatase 1 IEP RGD PMID:15494319 RGD:2298682 NCBI chr10:16,680,489...16,683,276 JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:17164434 RGD:1642048 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
JBrowse link
G Gata6 GATA binding protein 6 involved_in IEA
ISO
GO_REF:0000107
(PMID:33082341)
Ensembl
RGD
PMID:33082341 GO_REF:0000107 NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
JBrowse link
G Gdap1 ganglioside-induced differentiation-associated-protein 1 acts_upstream_of_or_within ISO (MGI:1335633|PMID:10217254) RGD PMID:10217254 MGI:1335633 NCBI chr 5:1,932,613...1,951,691
Ensembl chr 5:1,932,613...2,030,061
JBrowse link
G Gdap2 ganglioside-induced differentiation-associated-protein 2 acts_upstream_of_or_within ISO (MGI:1335633|PMID:10217254) RGD PMID:10217254 MGI:1335633 NCBI chr 2:187,528,514...187,585,270
Ensembl chr 2:187,528,513...187,585,270
JBrowse link
G Gja1 gap junction protein, alpha 1 IEP RGD PMID:9570757 RGD:11568675 NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
JBrowse link
G Gjb2 gap junction protein, beta 2 IEP RGD PMID:9570757 RGD:11568675 NCBI chr15:31,260,390...31,278,222
Ensembl chr15:31,260,357...31,278,177
JBrowse link
G Hsd17b2 hydroxysteroid (17-beta) dehydrogenase 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:17538076)
Ensembl
RGD
PMID:17538076 GO_REF:0000107 NCBI chr19:45,753,576...45,825,203
Ensembl chr19:45,753,574...45,825,202
JBrowse link
G Igf2r insulin-like growth factor 2 receptor IDA RGD PMID:9811861 RGD:2311629 NCBI chr 1:47,979,109...48,067,501
Ensembl chr 1:47,979,109...48,067,501
JBrowse link
G Igfbp2 insulin-like growth factor binding protein 2 IEP RGD PMID:11880314 RGD:1643103 NCBI chr 9:74,415,574...74,442,945
Ensembl chr 9:74,415,546...74,442,937
JBrowse link
G Igfbp7 insulin-like growth factor binding protein 7 IEP RGD PMID:9886829 RGD:1626580 NCBI chr14:30,737,414...30,797,317
Ensembl chr14:30,737,164...30,797,314
JBrowse link
G Ireb2 iron responsive element binding protein 2 IEP RGD PMID:19877527 RGD:6893274 NCBI chr 8:55,228,080...55,311,613
Ensembl chr 8:55,228,085...55,311,611
JBrowse link
G Klf4 Kruppel like factor 4 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
JBrowse link
G Lefty1 left right determination factor 1 acts_upstream_of_or_within ISO (MGI:1346236|PMID:10500184) RGD PMID:10500184 MGI:1346236 NCBI chr13:92,649,226...92,659,722
Ensembl chr13:92,656,323...92,659,720
JBrowse link
G Lrat lecithin retinol acyltransferase IEP RGD PMID:19700416 RGD:6484694 NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
JBrowse link
G Lrp2 LDL receptor related protein 2 IEP RGD PMID:9541123 RGD:1641848 NCBI chr 3:54,189,305...54,346,769
Ensembl chr 3:54,189,308...54,346,708
JBrowse link
G Map7 microtubule-associated protein 7 acts_upstream_of_or_within ISO MGI:2148221 (MGI:1859100|PMID:10837026) RGD PMID:10837026 MGI:1859100 NCBI chr 1:14,910,433...15,037,574
Ensembl chr 1:14,910,551...15,037,574
JBrowse link
G Mest mesoderm specific transcript involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr 4:59,354,445...59,364,919
Ensembl chr 4:59,354,447...59,366,145
JBrowse link
G Micb MHC class I polypeptide-related sequence B involved_in ISO (PMID:12569559) RGD PMID:12569559 NCBI chr 1:78,495,779...78,513,030
Ensembl chr 1:78,495,779...78,512,827
JBrowse link
G Mmp2 matrix metallopeptidase 2 IEP RGD PMID:19099751 RGD:5129684 NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:19099751 RGD:5129684 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
JBrowse link
G Ncoa1 nuclear receptor coactivator 1 IMP RGD PMID:9808623 RGD:2293532 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664
JBrowse link
G Ovca2 OVCA2 serine hydrolase domain containing involved_in ISO (PMID:11979432) RGD PMID:11979432 NCBI chr10:60,026,048...60,029,211 JBrowse link
G Oxt oxytocin/neurophysin I prepropeptide IEP RGD PMID:15316117 RGD:2304180 NCBI chr 3:117,782,650...117,783,490
Ensembl chr 3:117,782,650...117,783,490
JBrowse link
G Pdgfa platelet derived growth factor subunit A IEP RGD PMID:15315332 RGD:2292166 NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IEP RGD PMID:17303670 RGD:2292175 NCBI chr18:54,500,002...54,538,843
Ensembl chr18:54,499,964...54,538,843
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Ptch1 patched 1 IEP RGD PMID:17307727 RGD:2303054 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
G Ptges prostaglandin E synthase IEP RGD PMID:18183617 RGD:2300091 NCBI chr 3:14,177,892...14,189,236 JBrowse link
G Rara retinoic acid receptor, alpha involved_in
acts_upstream_of_or_within
ISO (PMID:17538076)
MGI:1857622 (MGI:1931374|PMID:11222375)
RGD PMID:11222375 PMID:17538076 MGI:1931374 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO (PMID:17943189) RGD PMID:17943189 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:571335) RGD PMID:571335 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Rnf2 ring finger protein 2 IEP RGD PMID:20515739 RGD:9491842 NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099
JBrowse link
G Rpl36al ribosomal protein L36a-like acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 6:87,654,808...87,656,202 JBrowse link
G Runx1 RUNX family transcription factor 1 involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542
JBrowse link
G Rxra retinoid X receptor alpha involved_in IEP
IBA
ISO
IEA
PMID:21873635
(PMID:17538076)
GO_REF:0000107
RGD
Ensembl
PMID:17538076 PMID:9555940 PMID:21873635 GO_REF:0000107, RGD:1643120, RGD:13792537 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Rxrb retinoid X receptor beta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773
JBrowse link
G Rxrg retinoid X receptor gamma involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:17161848 PMID:21873635 RGD:2325973, RGD:13792537 NCBI chr13:79,743,430...79,785,173
Ensembl chr13:79,743,563...79,785,167
JBrowse link
G Scamp3 secretory carrier membrane protein 3 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 2:174,583,124...174,588,984 JBrowse link
G Sftpa1 surfactant protein A1 IEP RGD PMID:9505268 RGD:4143481 NCBI chr16:17,008,180...17,011,686
Ensembl chr16:17,008,180...17,011,685
JBrowse link
G Sftpc surfactant protein C IEP RGD PMID:9505268 RGD:4143481 NCBI chr15:45,596,565...45,599,615
Ensembl chr15:45,596,574...45,610,777
JBrowse link
G Shh sonic hedgehog signaling molecule IEP RGD PMID:10633866 RGD:2306310 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Slc10a3 solute carrier family 10, member 3 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr  X:152,154,757...152,158,563
Ensembl chr  X:152,151,076...152,162,958
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Sp100 SP100 nuclear antigen involved_in ISO (PMID:11313457) RGD PMID:11313457 NCBI chr 9:86,310,990...86,377,036
Ensembl chr 9:86,311,032...86,377,034
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 IEP RGD PMID:9121491 RGD:2308848 NCBI chr10:45,007,637...45,029,650
Ensembl chr10:45,007,637...45,029,650
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 8:58,549,743...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit IEP RGD PMID:20515739 RGD:9491842 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738
JBrowse link
G Synj1 synaptojanin 1 IMP RGD PMID:19282871 RGD:2312448 NCBI chr11:30,192,629...30,269,277
Ensembl chr11:30,192,629...30,269,220
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:5300829|PMID:22186728)
Ensembl
RGD
PMID:22186728 GO_REF:0000107 MGI:5300829 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
JBrowse link
G Tek TEK receptor tyrosine kinase involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr 5:109,607,077...109,733,805
Ensembl chr 5:109,607,077...109,733,804
JBrowse link
G Tfrc transferrin receptor IEP RGD PMID:18029484 RGD:2292030 NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEP RGD PMID:16479313 RGD:2302093 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 involved_in ISO (MGI:3799604|PMID:18439490) RGD PMID:18439490 MGI:3799604 NCBI chr 5:132,000,013...132,019,658
Ensembl chr 5:132,000,015...132,019,592
JBrowse link
G Tlr4 toll-like receptor 4 IEP RGD PMID:20438866 RGD:7777075 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tmem161a transmembrane protein 161A involved_in ISO (PMID:16551573) RGD PMID:16551573 NCBI chr16:19,237,638...19,248,151
Ensembl chr16:19,238,487...19,248,087
JBrowse link
G Tp53 tumor protein p53 IEP RGD PMID:17962954 RGD:2290560 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Trim16 tripartite motif-containing 16 involved_in ISO (PMID:16636064) RGD PMID:16636064 NCBI chr10:47,485,982...47,509,010 JBrowse link
G Triml2 tripartite motif family-like 2 acts_upstream_of_or_within ISO (MGI:3795829|PMID:18400104) RGD PMID:18400104 MGI:3795829 NCBI chr16:48,944,838...48,955,453
Ensembl chr16:48,944,838...48,955,453
JBrowse link
cellular response to retinoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (MGI:4411947|PMID:19752193) RGD PMID:19752193 MGI:4411947 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr13:68,673,702...68,839,742
Ensembl chr13:68,673,722...68,839,742
JBrowse link
G Add1 adducin 1 IDA RGD PMID:20493242 RGD:5148002 NCBI chr14:76,108,643...76,167,267
Ensembl chr14:76,108,654...76,167,182
JBrowse link
G Adnp2 ADNP homeobox 2 involved_in ISO (MGI:3793419|PMID:18179478) RGD PMID:18179478 MGI:3793419 NCBI chr18:73,571,870...73,597,088
Ensembl chr18:73,571,936...73,628,484
JBrowse link
G Afp alpha-fetoprotein IEP RGD PMID:7539613 RGD:126790586 NCBI chr14:17,573,412...17,591,476
Ensembl chr14:17,573,412...17,591,480
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO (PMID:18816858) RGD PMID:18816858 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Aqp1 aquaporin 1 involved_in ISO
ISS
(PMID:12051745), (PMID:19424603)
GO_REF:0000024
RGD
UniProt
PMID:12051745 PMID:19424603 GO_REF:0000024 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Atm ATM serine/threonine kinase involved_in ISO (MGI:4837978|PMID:20876357) RGD PMID:20876357 MGI:4837978 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 IEP RGD PMID:8944660 RGD:11576286 NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918
JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 involved_in IEA
ISO
IBA
GO_REF:0000107
(MGI:5521281|PMID:20025061)
PMID:21873635
Ensembl
RGD
PMID:20025061 PMID:21873635 GO_REF:0000107 MGI:5521281, RGD:13792537 NCBI chr 5:82,348,501...82,550,506
Ensembl chr 5:82,348,930...82,493,150
JBrowse link
G Brinp2 BMP/retinoic acid inducible neural specific 2 involved_in IEA
ISO
IBA
GO_REF:0000107
(MGI:5521281|PMID:20025061)
PMID:21873635
Ensembl
RGD
PMID:20025061 PMID:21873635 GO_REF:0000107 MGI:5521281, RGD:13792537 NCBI chr13:70,431,006...70,532,766
Ensembl chr13:70,431,010...70,531,810
JBrowse link
G Brinp3 BMP/retinoic acid inducible neural specific 3 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:5521281|PMID:20025061)
GO_REF:0000024
RGD
UniProt
PMID:20025061 PMID:21873635 GO_REF:0000024 MGI:5521281, RGD:13792537 NCBI chr13:58,413,883...58,846,828
Ensembl chr13:58,413,883...58,846,770
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP RGD PMID:11274229 RGD:8549584 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
JBrowse link
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:1921334 PMID:21181362 RGD:2316228, RGD:8552777 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col1a2 collagen type I alpha 2 chain IEP RGD PMID:15234273 RGD:5688233 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP RGD PMID:23810783 RGD:8661241 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Creb1 cAMP responsive element binding protein 1 involved_in ISO (MGI:4837978|PMID:20876357) RGD PMID:20876357 MGI:4837978 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within ISO (PMID:18816858) RGD PMID:18816858 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO (PMID:18816858) RGD PMID:18816858 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
JBrowse link
G Eln elastin IEP RGD PMID:8238530 RGD:9585669 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928
JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:20711222 RGD:7364732 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Epha3 Eph receptor A3 involved_in IEA
ISO
GO_REF:0000107
(PMID:17910947)
Ensembl
RGD
PMID:17910947 GO_REF:0000107 NCBI chr11:1,138,485...1,474,102
Ensembl chr11:1,140,985...1,473,900
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:15389522 RGD:12801431 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Gjb3 gap junction protein, beta 3 IEP RGD PMID:8806447 RGD:12437074 NCBI chr 5:139,649,227...139,655,083
Ensembl chr 5:139,649,195...139,654,980
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO
IEA
(PMID:28122350)
GO_REF:0000107
RGD
Ensembl
PMID:28122350 GO_REF:0000107 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IEP RGD PMID:16619265 RGD:5131544 NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Hdac2 histone deacetylase 2 IEP RGD PMID:19486889 RGD:9590233 NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO (MGI:5500986|PMID:23723417) RGD PMID:23723417 MGI:5500986 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (MGI:5500986|PMID:23723417) RGD PMID:23723417 MGI:5500986
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:17297443) RGD PMID:17297443 NCBI chr 4:115,556,914...115,560,202
Ensembl chr 4:115,556,916...115,560,095
JBrowse link
G Ireb2 iron responsive element binding protein 2 IEP RGD PMID:22154532 RGD:12904026 NCBI chr 8:55,228,080...55,311,613
Ensembl chr 8:55,228,085...55,311,611
JBrowse link
G Irf1 interferon regulatory factor 1 IEP RGD PMID:15721283 RGD:5128785 NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166
JBrowse link
G Klf4 Kruppel like factor 4 IEP RGD PMID:19486889 RGD:9590233 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
JBrowse link
G Krt13 keratin 13 IEP RGD PMID:7509732 RGD:2316552 NCBI chr10:85,052,122...85,056,032
Ensembl chr10:85,051,889...85,056,084
JBrowse link
G Lep leptin IEP RGD PMID:19212007 RGD:5128705 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Ltk leukocyte receptor tyrosine kinase involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 3:106,734,675...106,741,552
Ensembl chr 3:106,734,676...106,743,369
JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 5:16,639,512...16,755,501
Ensembl chr 5:16,639,466...16,756,868
JBrowse link
G Mef2c myocyte enhancer factor 2C IDA RGD PMID:17568621 RGD:5131615 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Meiosin meiosis initiator involved_in ISO (MGI:6441108|PMID:32032549) RGD PMID:32032549 MGI:6441108 NCBI chr 1:78,744,504...78,768,104 JBrowse link
G Muc1 mucin 1, cell surface associated IEP RGD PMID:8967520 RGD:633461 NCBI chr 2:174,635,559...174,640,738
Ensembl chr 2:174,635,995...174,640,733
JBrowse link
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming IEP RGD PMID:8967520 RGD:633461 NCBI chr 1:196,864,375...196,896,475 JBrowse link
G Myb MYB proto-oncogene, transcription factor IEP RGD PMID:8670250 RGD:11532681 NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IEP RGD PMID:12873812 RGD:10059626 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Myog myogenin IEP RGD PMID:1323566 RGD:9686127 NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
JBrowse link
G Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 involved_in ISO (PMID:17297443) RGD PMID:17297443 NCBI chr16:19,526,633...19,533,567
Ensembl chr16:19,526,565...19,535,726
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IEP RGD PMID:10027563 RGD:2325652 NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
JBrowse link
G Orm1 orosomucoid 1 IEP RGD PMID:15157739 RGD:2316642 NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154
JBrowse link
G Osr1 odd-skipped related transcription factor 1 acts_upstream_of_or_within ISO (PMID:20171952) RGD PMID:20171952 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:20171952)
UniProt
RGD
PMID:20171952 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 IEP RGD PMID:21519922 RGD:10428394 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
JBrowse link
G Phb2 prohibitin 2 IEP RGD PMID:25031298 RGD:12903263 NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
JBrowse link
G Phc1 polyhomeotic homolog 1 acts_upstream_of_or_within ISO (MGI:67737|PMID:8070621) RGD PMID:8070621 MGI:67737 NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IEP RGD PMID:10797535 RGD:8553016 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282
JBrowse link
G Ptk6 protein tyrosine kinase 6 involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 3:168,307,073...168,315,664
Ensembl chr 3:168,307,073...168,315,664
JBrowse link
G Ptk7 protein tyrosine kinase 7 involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 9:14,352,155...14,418,494
Ensembl chr 9:14,351,202...14,418,494
JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO (PMID:28122350) RGD PMID:28122350 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IEP
ISO
(MGI:77094|PMID:2157970) RGD PMID:2157970 PMID:11072095 MGI:77094, RGD:1300463 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Ret ret proto-oncogene involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
JBrowse link
G Rorb RAR-related orphan receptor B involved_in IDA PMID:12958591 UniProt PMID:12958591 RGD:8553609 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
JBrowse link
G Rxrb retinoid X receptor beta involved_in ISO (MGI:4820711|PMID:18922886) RGD PMID:18922886 MGI:4820711 NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773
JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:15051476 RGD:2312357 NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
JBrowse link
G Setx senataxin involved_in ISO (PMID:21576111) RGD PMID:21576111 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Slc6a4 solute carrier family 6 member 4 IEP RGD PMID:17895527 RGD:4889514 NCBI chr10:61,824,208...61,858,924
Ensembl chr10:61,826,123...61,858,384
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEP RGD PMID:10022522 RGD:10448942 NCBI chr 1:95,856,039...95,876,434
Ensembl chr 1:95,856,036...95,876,392
JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:19934264)
(MGI:5315685|PMID:19934264)
RGD PMID:19934264 MGI:5315685 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISO (PMID:12420222)
(MGI:3848572|PMID:19389355)
RGD PMID:12420222 PMID:19389355 MGI:3848572 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Stra8 stimulated by retinoic acid 8 involved_in ISO (MGI:3839158|PMID:19301398), (MGI:6441108|PMID:32032549) RGD PMID:19301398 PMID:32032549 MGI:3839158 MGI:6441108 NCBI chr 4:63,601,443...63,624,777
Ensembl chr 4:63,601,604...63,624,771
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:18816858)
UniProt
RGD
PMID:18816858 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbxt T-box transcription factor T IEP RGD PMID:20507357 RGD:8693647 NCBI chr 1:52,298,099...52,309,813
Ensembl chr 1:52,298,099...52,305,864
JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:5317256 NCBI chr 1:166,791,900...167,010,591
Ensembl chr 1:166,792,628...167,003,369
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:5317256 NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186
JBrowse link
G Tesc tescalcin involved_in ISO (PMID:20060826) RGD PMID:20060826 NCBI chr12:38,521,839...38,555,665
Ensembl chr12:38,521,861...38,555,824
JBrowse link
G Tlr4 toll-like receptor 4 IEP RGD PMID:20438866 RGD:7777075 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tnc tenascin C IEP RGD PMID:10502285 RGD:4889620 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
JBrowse link
G Tnf tumor necrosis factor IEP RGD PMID:15602748 RGD:1582142 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Twf2 twinfilin actin-binding protein 2 involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 8:106,845,253...106,858,298
Ensembl chr 8:106,845,253...106,858,298
JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (PMID:12239632), (PMID:12429992) RGD PMID:12239632 PMID:12429992 NCBI chr 7:116,634,817...116,679,089
Ensembl chr 7:116,634,814...116,679,581
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO (MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:5317256 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
JBrowse link
G Yes1 YES proto-oncogene 1, Src family tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5317256|PMID:21385842)
GO_REF:0000107
RGD
Ensembl
PMID:21385842 GO_REF:0000107 MGI:5317256 NCBI chr 9:113,200,256...113,275,942
Ensembl chr 9:113,200,256...113,299,837
JBrowse link
G Zfp105 zinc finger protein 105 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 8:122,567,229...122,578,696
Ensembl chr 8:122,567,214...122,578,692
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    response to stimulus 10416
      response to chemical 6209
        response to oxygen-containing compound 2382
          response to retinoic acid 156
            cellular response to retinoic acid 81
Path 2
Term Annotations click to browse term
  biological_process 19497
    response to stimulus 10416
      response to chemical 6209
        response to organic substance 3921
          response to lipid 1392
            response to retinoic acid 156
              cellular response to retinoic acid 81
paths to the root