Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:response to peptidoglycan
go back to main search page
Accession:GO:0032494 term browser browse the term
Definition:Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidoglycan stimulus. Peptidoglycan is a bacterial cell wall macromolecule.


show annotations for term's descendants           Sort by:
 
response to peptidoglycan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C5AR1 complement C5a receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3814295|PMID:17114491) Ensembl
Ensembl
MGI		 PMID:17114491 GO_REF:0000107 MGI:3814295 NCBI chr19:47,307,477...47,322,066
Ensembl chr19:47,290,023...47,322,066 		JBrowse link
G CARD9 caspase recruitment domain family member 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3697751|PMID:17187069) Ensembl
Ensembl
MGI		 PMID:17187069 GO_REF:0000107 MGI:3697751 NCBI chr 9:136,363,956...136,373,669
Ensembl chr 9:136,363,956...136,373,681 		JBrowse link
G IL6 interleukin 6 involved_in NAS (PMID:16034137) BHF-UCL
BHF-UCL		 PMID:16034137 NCBI chr 7:22,727,200...22,731,998
Ensembl chr 7:22,725,884...22,732,002 		JBrowse link
G INAVA innate immunity activator involved_in IMP (PMID:28436939) UniProt
UniProt		 PMID:28436939 NCBI chr 1:200,891,531...200,915,742
Ensembl chr 1:200,891,048...200,915,742 		JBrowse link
G IRAK1 interleukin 1 receptor associated kinase 1 acts_upstream_of_or_within ISO (MGI:2178646|PMID:10549626) MGI PMID:10549626 MGI:2178646 NCBI chr  X:154,010,507...154,019,902
Ensembl chr  X:154,010,506...154,019,902 		JBrowse link
G IRAK3 interleukin 1 receptor associated kinase 3 involved_in ISS
IEA		 (PMID:12150927) BHF-UCL
Ensembl
BHF-UCL		 PMID:12150927 GO_REF:0000107 NCBI chr12:66,189,214...66,254,622
Ensembl chr12:66,189,195...66,254,622 		JBrowse link
G IRF5 interferon regulatory factor 5 involved_in IDA (PMID:22412986) BHF-UCL
BHF-UCL		 PMID:22412986 NCBI chr 7:128,937,032...128,950,038
Ensembl chr 7:128,937,457...128,950,038 		JBrowse link
G MYD88 MYD88 innate immune signal transduction adaptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3640248|PMID:10607756) Ensembl
Ensembl
MGI		 PMID:10607756 GO_REF:0000107 MGI:3640248 NCBI chr 3:38,138,661...38,143,022
Ensembl chr 3:38,138,478...38,143,022 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3050756|PMID:15220916) MGI
Ensembl		 PMID:15220916 GO_REF:0000107 MGI:3050756 NCBI chr16:50,693,606...50,733,075
Ensembl chr16:50,693,588...50,734,041 		JBrowse link
G TLR2 toll like receptor 2 acts_upstream_of_or_within ISO (MGI:3814295|PMID:17114491)
(MGI:2178646|PMID:10549626)		 MGI PMID:10549626 PMID:17114491 MGI:2178646 MGI:3814295 NCBI chr 4:153,684,280...153,710,637
Ensembl chr 4:153,684,070...153,706,260 		JBrowse link
cellular response to peptidoglycan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAMP cathelicidin antimicrobial peptide involved_in IEA
ISO		 Ensembl
Ensembl
RGD		 PMID:19879657 GO_REF:0000107 RGD:2316237 NCBI chr 3:48,223,495...48,225,485
Ensembl chr 3:48,223,347...48,225,491 		JBrowse link
G DEFB124 defensin beta 124 involved_in IDA
IBA		 (PMID:24955228)
(PMID:21873635)		 UniProt
GO_Central
UniProt
GO_Central		 PMID:21873635 PMID:24955228 NCBI chr20:31,465,471...31,475,127
Ensembl chr20:31,465,471...31,476,757 		JBrowse link
G NLRP3 NLR family pyrin domain containing 3 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:247,416,077...247,448,817
Ensembl chr 1:247,416,156...247,449,108 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3686795|PMID:16949315) Ensembl
Ensembl
MGI
RGD		 PMID:16949315 PMID:24169446 GO_REF:0000107 MGI:3686795 RGD:13204728 NCBI chr16:50,693,606...50,733,075
Ensembl chr16:50,693,588...50,734,041 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit involved_in IMP (PMID:24955228) UniProt
UniProt		 PMID:24955228 NCBI chr11:65,653,601...65,662,916
Ensembl chr11:65,653,599...65,663,090 		JBrowse link
G RIPK2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2176422|PMID:11894098) Ensembl
Ensembl
MGI		 PMID:11894098 GO_REF:0000107 MGI:2176422 NCBI chr 8:89,757,816...89,791,064
Ensembl chr 8:89,757,806...89,791,064 		JBrowse link
G TLR2 toll like receptor 2 acts_upstream_of_or_within ISO (MGI:3686795|PMID:16949315) MGI PMID:16949315 MGI:3686795 NCBI chr 4:153,684,280...153,710,637
Ensembl chr 4:153,684,070...153,706,260 		JBrowse link
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:41,158,508...41,163,116
Ensembl chr 6:41,158,506...41,163,186 		JBrowse link
detection of muramyl dipeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 IDA (PMID:15998797)
(PMID:12527755)		 HGNC-UCL
MGI
HGNC-UCL
MGI		 PMID:12527755 PMID:15998797 NCBI chr16:50,693,606...50,733,075
Ensembl chr16:50,693,588...50,734,041 		JBrowse link
detection of peptidoglycan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:41,158,508...41,163,116
Ensembl chr 6:41,158,506...41,163,186 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19656
    response to stimulus 10120
      response to chemical 5532
        response to oxygen-containing compound 2494
          response to peptidoglycan 16
            cellular response to peptidoglycan 8
            detection of peptidoglycan + 2
Path 2
Term Annotations click to browse term
  biological_process 19656
    response to stimulus 10120
      response to biotic stimulus 1977
        response to external biotic stimulus 1928
          response to other organism 1925
            response to bacterium 1114
              response to molecule of bacterial origin 577
                response to peptidoglycan 16
                  cellular response to peptidoglycan 8
                  detection of peptidoglycan + 2
paths to the root