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ONTOLOGY REPORT - ANNOTATIONS


Term:stereocilium
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Accession:GO:0032420 term browser browse the term
Definition:An actin-based protrusion from the apical surface of auditory and vestibular hair cells and of neuromast cells. These protrusions are supported by a bundle of cross-linked actin filaments (an actin cable), oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which bridges to the plasma. Bundles of stereocilia act as mechanosensory organelles.


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stereocilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRV1 adhesion G protein-coupled receptor V1 ISO (MGI:MGI:5766107|PMID:26754646) RGD
MGI
PMID:16301216, PMID:26754646 MGI:MGI:5766107, RGD:8548636 NCBI chr 2:97,703,648...98,277,847
Ensembl chr 2:97,734,809...98,275,085
JBrowse link
G ATP8B1 ATPase phospholipid transporting 8B1 IEA Ensembl GO_REF:0000107 NCBI chr 1:162,936,209...163,063,040
Ensembl chr 1:162,933,131...163,063,032
JBrowse link
G BBS2 Bardet-Biedl syndrome 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:18,542,383...18,575,338
Ensembl chr 6:18,542,383...18,575,524
JBrowse link
G CALB1 calbindin 1 ISO RGD PMID:16120789 RGD:7175527 NCBI chr 4:46,701,276...46,723,548
Ensembl chr 4:46,701,045...46,725,198
JBrowse link
G CALB2 calbindin 2 ISO RGD PMID:16120789 RGD:7175527 NCBI chr 6:14,392,220...14,420,663
Ensembl chr 6:14,391,146...14,420,663
JBrowse link
G CDH23 cadherin related 23 IEA InterPro GO_REF:0000002 NCBI chr14:74,267,547...74,734,623
Ensembl chr14:74,223,089...74,733,834
JBrowse link
G CIB2 calcium and integrin binding family member 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:47,807,806...47,813,400
Ensembl chr 7:47,788,791...47,813,400
JBrowse link
G CLIC5 chloride intracellular channel 5 ISO (MGI:MGI:3663248|PMID:17021174) MGI PMID:17021174 MGI:MGI:3663248 NCBI chr 7:40,683,044...40,808,017
Ensembl chr 7:40,682,907...40,863,886
JBrowse link
G CLRN1 clarin 1 IEA Ensembl GO_REF:0000107 NCBI chr13:91,104,850...91,152,397
Ensembl chr13:91,106,323...91,147,832
JBrowse link
G DOCK4 dedicator of cytokinesis 4 IEA Ensembl GO_REF:0000107 NCBI chr18:33,423,199...33,879,368
Ensembl chr18:33,423,218...33,879,368
JBrowse link
G EPS8 epidermal growth factor receptor pathway substrate 8 ISO (MGI:MGI:5000171|PMID:21236676), (MGI:MGI:5607381|PMID:24741995) UniProtKB PMID:21236676, PMID:24741995 MGI:MGI:5000171, MGI:MGI:5607381 NCBI chr 5:56,817,445...57,005,117
Ensembl chr 5:56,817,606...57,005,114
JBrowse link
G ESPN espin ISO (PMID:29572253)
(MGI:MGI:4881391|PMID:20510926)
UniProt
MGI
PMID:20510926, PMID:29572253 MGI:MGI:4881391 NCBI chr 6:67,284,106...67,316,577
Ensembl chr 6:67,284,021...67,315,863
JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal IEA Ensembl GO_REF:0000107 NCBI chr12:1,300,286...1,311,562
Ensembl chr12:1,300,225...1,313,421
JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 8:33,838,400...33,952,643 JBrowse link
G IFT20 intraflagellar transport 20 IEA Ensembl GO_REF:0000107 NCBI chr12:44,609,586...44,616,685
Ensembl chr12:44,609,586...44,616,669
JBrowse link
G LOXHD1 lipoxygenase homology domains 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:96,080,751...96,287,034
Ensembl chr 1:96,079,709...96,276,992
JBrowse link
G MPP1 membrane palmitoylated protein 1 IEA UniProt GO_REF:0000044 NCBI chr  X:125,230,412...125,252,384
Ensembl chr  X:125,229,449...125,300,101
JBrowse link
G MYO15A myosin XVA ISO (MGI:MGI:4430014|PMID:20016102) MGI PMID:20016102 MGI:MGI:4430014 NCBI chr12:60,533,502...60,582,645 JBrowse link
G MYO1C myosin IC IEA Ensembl GO_REF:0000107 NCBI chr12:47,691,252...47,715,670
Ensembl chr12:47,691,252...47,738,439
JBrowse link
G MYO7A myosin VIIA ISS UniProt GO_REF:0000024 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296
JBrowse link
G OCM oncomodulin ISO RGD PMID:16120789 RGD:7175527 NCBI chr 3:5,239,438...5,245,329 JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr12:48,567,329...48,735,836
Ensembl chr12:48,567,337...48,735,838
JBrowse link
G PCDH15 protocadherin related 15 ISO (MGI:MGI:3722521|PMID:14570705)
(MGI:MGI:5766107|PMID:26754646)
HGNC
MGI
PMID:14570705, PMID:26754646 MGI:MGI:3722521, MGI:MGI:5766107 NCBI chr14:95,530,168...96,388,032 JBrowse link
G PDZD7 PDZ domain containing 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:112,088,332...112,111,348 JBrowse link
G PLS1 plastin 1 IEA Ensembl GO_REF:0000107 NCBI chr13:83,307,692...83,434,133
Ensembl chr13:83,308,007...83,434,128
JBrowse link
G PLS3 plastin 3 ISO RGD PMID:12378542 RGD:731234 NCBI chr  X:94,885,098...94,971,664
Ensembl chr  X:94,885,118...94,971,664
JBrowse link
G PROM1 prominin 1 ISO (MGI:MGI:3051924|PMID:15316084) MGI PMID:15316084 MGI:MGI:3051924 NCBI chr 8:11,215,659...11,331,442
Ensembl chr 8:11,215,659...11,317,312
JBrowse link
G PVALB parvalbumin ISO RGD PMID:16120789 RGD:7175527 NCBI chr 5:10,953,559...10,973,300
Ensembl chr 5:10,955,491...10,973,289
JBrowse link
G RDX radixin IEA Ensembl GO_REF:0000107 NCBI chr 9:38,243,608...38,299,561
Ensembl chr 9:38,220,441...38,376,439
JBrowse link
G RHOC ras homolog family member C IEA Ensembl GO_REF:0000107 NCBI chr 4:107,731,713...107,737,705 JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 ISO PMID:24958875
(MGI:MGI:5789047|PMID:27269051)
UniProt
UniProtKB
PMID:24958875, PMID:27269051 MGI:MGI:5789047, RGD:10047244 NCBI chr 7:19,609,358...19,842,345
Ensembl chr 7:19,587,685...19,838,093
JBrowse link
G SLC4A7 solute carrier family 4 member 7 ISO RGD PMID:16301216 RGD:8548636 NCBI chr13:13,933,552...14,043,108
Ensembl chr13:13,933,711...14,043,068
JBrowse link
G SLC9A3R1 SLC9A3 regulator 1 ISO (MGI:MGI:5578076|PMID:24920589) MGI PMID:24920589 MGI:MGI:5578076 NCBI chr12:6,466,138...6,483,539
Ensembl chr12:6,466,120...6,493,428
JBrowse link
G SLC9A3R2 SLC9A3 regulator 2 ISO (MGI:MGI:5578076|PMID:24920589) MGI PMID:24920589 MGI:MGI:5578076 NCBI chr 3:39,942,366...39,952,824
Ensembl chr 3:39,942,366...39,952,825
JBrowse link
G TPRN taperin ISO (MGI:MGI:4440409|PMID:20170899), (MGI:MGI:5789047|PMID:27269051) UniProtKB PMID:20170899, PMID:27269051 MGI:MGI:4440409, MGI:MGI:5789047
G TRIOBP TRIO and F-actin binding protein ISO (MGI:MGI:4881391|PMID:20510926) MGI PMID:20510926 MGI:MGI:4881391 NCBI chr 5:10,066,080...10,132,668
Ensembl chr 5:10,066,086...10,126,491
JBrowse link
G TSPEAR thrombospondin type laminin G domain and EAR repeats IEA Ensembl GO_REF:0000107 NCBI chr13:207,285,878...207,412,523
Ensembl chr13:207,285,881...207,412,512
JBrowse link
G TWF2 twinfilin actin binding protein 2 ISO (MGI:MGI:5285166|PMID:19955359) BHF-UCL PMID:19955359 MGI:MGI:5285166 NCBI chr13:34,361,294...34,370,997
Ensembl chr13:34,361,292...34,371,842
JBrowse link
G USH1C USH1 protein network component harmonin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:41,593,793...41,646,777
Ensembl chr 2:41,593,802...41,647,411
JBrowse link
G USH2A usherin NOT ISO hair cell
(MGI:MGI:5430895|PMID:16301217)
RGD
MGI
PMID:16301216, PMID:16301217 MGI:MGI:5430895, RGD:8548636 NCBI chr10:5,825,591...6,662,733 JBrowse link
G WHRN whirlin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:255,009,765...255,095,281
Ensembl chr 1:255,009,768...255,095,223
JBrowse link
G ZSWIM6 zinc finger SWIM-type containing 6 IEA Ensembl GO_REF:0000107 NCBI chr16:40,105,499...40,305,379
Ensembl chr16:40,105,426...40,305,376
JBrowse link
stereocilium base term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:147,215,061...147,231,792
Ensembl chr 2:147,216,279...147,232,250
JBrowse link
G MYO7A myosin VIIA ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296
JBrowse link
G PJVK pejvakin IEA Ensembl GO_REF:0000107 NCBI chr15:84,157,864...84,165,763
Ensembl chr15:84,157,419...84,165,438
JBrowse link
G TPRN taperin IEA Ensembl GO_REF:0000107
G TRIOBP TRIO and F-actin binding protein IEA Ensembl GO_REF:0000107 NCBI chr 5:10,066,080...10,132,668
Ensembl chr 5:10,066,086...10,126,491
JBrowse link
stereocilium coat term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PKHD1L1 PKHD1 like 1 ISO (MGI:MGI:6358987|PMID:31444330) MGI PMID:31444330 MGI:MGI:6358987 NCBI chr 4:28,023,448...28,176,331 JBrowse link
stereocilium membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1B calcium voltage-gated channel subunit alpha1 B ISO RGD PMID:10408625 RGD:11556226
G RIPOR2 RHO family interacting cell polarization regulator 2 IEA UniProt GO_REF:0000044 NCBI chr 7:19,609,358...19,842,345
Ensembl chr 7:19,587,685...19,838,093
JBrowse link
G USH2A usherin ISO (MGI:MGI:5430895|PMID:16301217) BHF-UCL PMID:16301217 MGI:MGI:5430895 NCBI chr10:5,825,591...6,662,733 JBrowse link
stereocilium shaft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FCHSD2 FCH and double SH3 domains 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:7,366,516...7,619,960
Ensembl chr 9:7,366,521...7,619,926
JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:147,215,061...147,231,792
Ensembl chr 2:147,216,279...147,232,250
JBrowse link
G TRIOBP TRIO and F-actin binding protein ISO (MGI:MGI:4881391|PMID:20510926) MGI PMID:20510926 MGI:MGI:4881391 NCBI chr 5:10,066,080...10,132,668
Ensembl chr 5:10,066,086...10,126,491
JBrowse link
stereocilium tip term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC14A cell division cycle 14A IEA Ensembl GO_REF:0000107 NCBI chr 4:117,635,849...117,804,568
Ensembl chr 4:117,635,861...117,805,254
JBrowse link
G CDH23 cadherin related 23 ISO (MGI:MGI:2447265|PMID:12485990), (MGI:MGI:3686545|PMID:17050716), (MGI:MGI:5578076|PMID:24920589) MGI PMID:12485990, PMID:17050716, PMID:24920589 MGI:MGI:2447265, MGI:MGI:3686545, MGI:MGI:5578076 NCBI chr14:74,267,547...74,734,623
Ensembl chr14:74,223,089...74,733,834
JBrowse link
G CEACAM16 CEA cell adhesion molecule 16, tectorial membrane component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:51,217,085...51,228,458
Ensembl chr 6:51,220,879...51,231,761
JBrowse link
G CORO1A coronin 1A ISO (MGI:MGI:5766107|PMID:26754646) MGI PMID:26754646 MGI:MGI:5766107 NCBI chr 3:18,336,813...18,342,381
Ensembl chr 3:18,336,899...18,342,380
JBrowse link
G EPS8 epidermal growth factor receptor pathway substrate 8 IEA Ensembl GO_REF:0000107 NCBI chr 5:56,817,445...57,005,117
Ensembl chr 5:56,817,606...57,005,114
JBrowse link
G EPS8L2 EPS8 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:435,257...452,630
Ensembl chr 2:433,649...452,630
JBrowse link
G ESPN espin ISO (MGI:MGI:5766107|PMID:26754646)
(MGI:MGI:5315207|PMID:22264607), (MGI:MGI:5766107|PMID:26754646)
MGI PMID:22264607, PMID:26754646 MGI:MGI:5315207, MGI:MGI:5766107 NCBI chr 6:67,284,106...67,316,577
Ensembl chr 6:67,284,021...67,315,863
JBrowse link
G ESPNL espin like IEA Ensembl GO_REF:0000107 NCBI chr15:137,674,867...137,706,968
Ensembl chr15:137,675,710...137,706,662
JBrowse link
G HOMER2 homer scaffold protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:52,001,253...52,104,426
Ensembl chr 7:52,001,578...52,096,847
JBrowse link
G LHFPL5 LHFPL tetraspan subfamily member 5 IEA Ensembl GO_REF:0000107 NCBI chr 7:31,624,050...31,642,269
Ensembl chr 7:31,623,849...31,642,268
JBrowse link
G MORN4 MORN repeat containing 4 ISO (MGI:MGI:5766107|PMID:26754646) UniProtKB PMID:26754646 MGI:MGI:5766107 NCBI chr14:108,987,739...108,999,610
Ensembl chr14:108,987,751...109,000,048
JBrowse link
G MYO3A myosin IIIA ISO (MGI:MGI:5766107|PMID:26754646)
(MGI:MGI:4849846|PMID:21165622), (MGI:MGI:5315207|PMID:22264607), (MGI:MGI:5766107|PMID:26754646)
MGI PMID:21165622, PMID:22264607, PMID:26754646 MGI:MGI:4849846, MGI:MGI:5315207, MGI:MGI:5766107 NCBI chr10:49,392,119...49,623,575 JBrowse link
G MYO3B myosin IIIB ISO (MGI:MGI:5766107|PMID:26754646)
(MGI:MGI:5315207|PMID:22264607), (MGI:MGI:5766107|PMID:26754646)
MGI PMID:22264607, PMID:26754646 MGI:MGI:5315207, MGI:MGI:5766107 NCBI chr15:76,432,429...76,855,443
Ensembl chr15:76,401,963...76,855,432
JBrowse link
G PDZD7 PDZ domain containing 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:112,088,332...112,111,348 JBrowse link
G PKHD1L1 PKHD1 like 1 ISO (MGI:MGI:6358987|PMID:31444330) MGI PMID:31444330 MGI:MGI:6358987 NCBI chr 4:28,023,448...28,176,331 JBrowse link
G SLC9A3R1 SLC9A3 regulator 1 IEA Ensembl GO_REF:0000107 NCBI chr12:6,466,138...6,483,539
Ensembl chr12:6,466,120...6,493,428
JBrowse link
G STRC stereocilin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:127,830,759...127,852,392
Ensembl chr 1:127,821,905...127,852,339
JBrowse link
G TMC1 transmembrane channel like 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:225,714,601...226,111,045
Ensembl chr 1:225,714,021...226,110,917
JBrowse link
G TMC2 transmembrane channel like 2 IEA Ensembl GO_REF:0000107 NCBI chr17:32,977,890...33,047,982
Ensembl chr17:32,977,995...33,048,080
JBrowse link
G USH1C USH1 protein network component harmonin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:41,593,793...41,646,777
Ensembl chr 2:41,593,802...41,647,411
JBrowse link
G WHRN whirlin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:255,009,765...255,095,281
Ensembl chr 1:255,009,768...255,095,223
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16940
    cellular anatomical entity 16852
      organelle 11466
        stereocilium 60
          actin filament bundle of stereocilium 0
          stereocilium base 5
          stereocilium coat 1
          stereocilium membrane 3
          stereocilium shaft 3
          stereocilium tip 21
Path 2
Term Annotations click to browse term
  cellular_component 16940
    cellular anatomical entity 16852
      cell projection 2348
        plasma membrane bounded cell projection 2296
          neuron projection 1524
            stereocilium 60
              actin filament bundle of stereocilium 0
              stereocilium base 5
              stereocilium coat 1
              stereocilium membrane 3
              stereocilium shaft 3
              stereocilium tip 21
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.