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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor connecting cilium
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Accession:GO:0032391 term browser browse the term
Definition:The portion of the photoreceptor cell cilium linking the photoreceptor inner and outer segments. It's considered to be equivalent to the ciliary transition zone.
Synonyms:related_synonym: photoreceptor cilium


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photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:3774983|PMID:17906286) RGD PMID:17906286 MGI:3774983 NCBI chr 2:8,926,843...9,504,455
Ensembl chr 2:8,926,850...9,504,134
JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:12417528)
Ensembl
UniProt
RGD
PMID:12417528 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:266,287,015...266,333,099
Ensembl chr 1:266,287,017...266,333,105
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (MGI:5525015|PMID:23943788) RGD PMID:16632484 PMID:16682973 PMID:23943788 MGI:3624140 MGI:3653539 MGI:5525015 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Cetn1 centrin 1 ISO (MGI:3525432|PMID:15347651), (MGI:6393223|PMID:30120214) RGD PMID:15347651 PMID:30120214 MGI:3525432 MGI:6393223 NCBI chr18:785,972...786,674
Ensembl chr18:785,972...786,674
JBrowse link
G Cetn2 centrin 2 ISO (MGI:3525432|PMID:15347651) RGD PMID:15347651 MGI:3525432 NCBI chr  X:152,927,852...152,933,095
Ensembl chr  X:152,927,718...152,932,953
JBrowse link
G Cetn3 centrin 3 ISO (MGI:3525432|PMID:15347651), (MGI:5303017|PMID:22031837), (MGI:5588761|PMID:24833722) RGD PMID:15347651 PMID:22031837 PMID:24833722 MGI:3525432 MGI:5303017 MGI:5588761 NCBI chr 2:12,101,473...12,115,009
Ensembl chr 2:12,102,487...12,115,009
JBrowse link
G Cfap410 cilia and flagella associated protein 410 ISO (MGI:5770162|PMID:26974433) RGD PMID:26974433 MGI:5770162 NCBI chr20:11,417,428...11,424,301
Ensembl chr20:11,417,429...11,424,324
JBrowse link
G Fam161a FAM161 centrosomal protein A IDA
IBA
ISO
PMID:22940612
PMID:21873635
(MGI:5438885|PMID:22791751), (MGI:5442623|PMID:22940612), (MGI:5588761|PMID:24833722)
(PMID:22940612)
RGD PMID:22791751 PMID:22940612 PMID:24833722, PMID:22940612, PMID:21873635 MGI:5438885 MGI:5442623 MGI:5588761, RGD:8553427, RGD:13792537 NCBI chr14:107,785,029...107,803,765
Ensembl chr14:107,785,029...107,798,115
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:3757777|PMID:17881533) RGD PMID:17881533 MGI:3757777 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:4460838|PMID:20368623), (MGI:5604762|PMID:24619649) RGD PMID:20368623 PMID:24619649 MGI:4460838 MGI:5604762 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) RGD PMID:21307337 MGI:5317282 NCBI chr10:65,805,808...65,811,353
Ensembl chr10:65,805,860...65,811,351
JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:4460838|PMID:20368623) RGD PMID:20368623 MGI:4460838 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ift57 intraflagellar transport 57 ISO (MGI:4460838|PMID:20368623) RGD PMID:20368623 MGI:4460838 NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779
JBrowse link
G Ift88 intraflagellar transport 88 ISO (MGI:3839506|PMID:19208653), (MGI:4460838|PMID:20368623) RGD PMID:19208653 PMID:20368623 MGI:3839506 MGI:4460838 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Iqcb1 IQ motif containing B1 ISO (PMID:15723066)
(MGI:3763297|PMID:15723066)
RGD PMID:15723066 MGI:3763297 NCBI chr11:66,824,059...66,878,585
Ensembl chr11:66,824,065...66,878,551
JBrowse link
G Kif17 kinesin family member 17 ISO (MGI:4353477|PMID:19384852) RGD PMID:19384852 MGI:4353477 NCBI chr 5:156,628,409...156,665,752
Ensembl chr 5:156,628,432...156,666,284
JBrowse link
G Kif3a kinesin family member 3a ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Kifap3 kinesin-associated protein 3 ISO (MGI:4353477|PMID:19384852) RGD PMID:19384852 MGI:4353477 NCBI chr13:82,072,497...82,217,256
Ensembl chr13:82,072,497...82,217,252
JBrowse link
G Lca5 lebercilin LCA5 IDA
ISO
PMID:17546029
(MGI:5050784|PMID:21606596)
(PMID:21606596)
RGD PMID:21606596, PMID:17546029 MGI:5050784, RGD:14397561 NCBI chr 8:90,926,309...90,984,271
Ensembl chr 8:90,926,311...90,984,224
JBrowse link
G Mak male germ cell-associated kinase ISO (MGI:5298333|PMID:21148103) RGD PMID:21148103 MGI:5298333 NCBI chr17:21,531,651...21,567,742
Ensembl chr17:21,521,505...21,568,440
JBrowse link
G Myo7a myosin VIIA ISO (MGI:1343017|PMID:10414956) RGD PMID:10414956 MGI:1343017 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:4821072|PMID:16885411) RGD PMID:16885411 MGI:4821072 NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:4867588|PMID:21078623) RGD PMID:21078623 MGI:4867588 NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
JBrowse link
G Pcdhb22 protocadherin beta 22 ISO (MGI:3775581|PMID:18279309) RGD PMID:18279309 MGI:3775581 NCBI chr18:30,590,864...30,595,456
Ensembl chr18:30,592,794...30,595,181
JBrowse link
G Pdzd7 PDZ domain containing 7 colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
JBrowse link
G RGD1306271 similar to KIAA1549 protein ISO (MGI:6393223|PMID:30120214) RGD PMID:30120214 MGI:6393223 NCBI chr 4:65,834,933...65,962,722
Ensembl chr 4:65,834,035...65,962,539
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (PMID:11767049)
(MGI:2156902|PMID:11773008), (MGI:2676521|PMID:14507858)
RGD PMID:11767049 PMID:11773008 PMID:14507858 MGI:2156902 MGI:2676521 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) RGD PMID:19657028 MGI:4353917 NCBI chr15:47,344,380...47,384,461
Ensembl chr15:47,373,120...47,383,508
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) RGD PMID:10725384 MGI:1354839 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:5608598|PMID:25398945) RGD PMID:25398945 MGI:5608598 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Rpgrip1l Rpgrip1-like IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:17558407, PMID:21873635 RGD:11537356, RGD:13792537 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Septin2 septin 2 ISO (PMID:23572511) RGD PMID:23572511 NCBI chr 9:100,624,876...100,658,053
Ensembl chr 9:100,624,876...100,658,050
JBrowse link
G Spata7 spermatogenesis associated 7 ISS
ISO
GO_REF:0000024
(MGI:5608598|PMID:25398945)
UniProt
RGD
PMID:25398945 GO_REF:0000024 MGI:5608598 NCBI chr 6:122,603,248...122,648,718
Ensembl chr 6:122,603,269...122,648,699
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:111,833,411...111,875,551 JBrowse link
G Tbcc tubulin folding cofactor C ISO (PMID:12417528) RGD PMID:12417528 NCBI chr 9:16,405,187...16,406,338
Ensembl chr 9:16,405,185...16,406,338
JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) RGD PMID:20375344 MGI:4830641 NCBI chr 9:65,882,063...65,917,424
Ensembl chr 9:65,882,054...65,917,132
JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase ISO
IBA
(PMID:21159800)
PMID:21873635
(MGI:4939557|PMID:21159800)
RGD PMID:21159800, PMID:21873635 MGI:4939557, RGD:13792537 NCBI chr 5:56,554,956...56,566,503
Ensembl chr 5:56,554,969...56,567,320
JBrowse link
G Tsga10ip testis specific 10 interacting protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,772,592...220,786,952
Ensembl chr 1:220,772,411...220,787,238
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO (MGI:2677624|PMID:14520415) RGD PMID:14520415 MGI:2677624 NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522
JBrowse link
G Ush1c USH1 protein network component harmonin colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
G Ush1g USH1 protein network component sans ISO (MGI:3774983|PMID:17906286) RGD PMID:17906286 MGI:3774983 NCBI chr10:103,866,566...103,873,416
Ensembl chr10:103,869,377...103,873,246
JBrowse link
G Ush2a usherin colocalizes_with IDA
ISO
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) RGD PMID:17906286 PMID:21212183, PMID:16434480 MGI:3774983 MGI:4950337, RGD:1600128 NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329
JBrowse link
G Wdr19 WD repeat domain 19 ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
G Whrn whirlin colocalizes_with IDA
IBA
ISO
IEA
PMID:21873635
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183)
GO_REF:0000107
RGD
Ensembl
PMID:17906286 PMID:21212183, PMID:16434480, PMID:21873635 GO_REF:0000107 MGI:3774983 MGI:4950337, RGD:1600128, RGD:13792537 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Spata7 spermatogenesis associated 7 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:5660490 (MGI:6194004|PMID:29899041)
Ensembl
RGD
PMID:29899041, PMID:21873635 GO_REF:0000107 MGI:6194004, RGD:13792537 NCBI chr 6:122,603,248...122,648,718
Ensembl chr 6:122,603,269...122,648,699
JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20659
    cellular anatomical entity 20354
      ciliary transition zone 76
        photoreceptor connecting cilium 47
          photoreceptor distal connecting cilium 7
          photoreceptor proximal connecting cilium 1
Path 2
Term Annotations click to browse term
  cellular_component 20659
    cellular anatomical entity 20354
      cell projection 2551
        plasma membrane bounded cell projection 2480
          cilium 686
            non-motile cilium 171
              9+0 non-motile cilium 131
                photoreceptor cell cilium 118
                  photoreceptor connecting cilium 47
                    photoreceptor distal connecting cilium 7
                    photoreceptor proximal connecting cilium 1
paths to the root