ONTOLOGY REPORT - ANNOTATIONS
Term: photoreceptor connecting cilium
Accession: GO:0032391
browse the term
Definition: The portion of the photoreceptor cell cilium linking the photoreceptor inner and outer segments. It's considered to be equivalent to the ciliary transition zone.
Synonyms: related_synonym: photoreceptor cilium
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Adgrv1
adhesion G protein-coupled receptor V1
ISO
(MGI:3774983|PMID:17906286)
RGD
PMID:17906286
MGI:3774983
NCBI chr 2:8,926,843...9,504,455
Ensembl chr 2:8,926,850...9,504,134
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Arl3
ADP ribosylation factor like GTPase 3
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (PMID:12417528)
Ensembl UniProt RGD
PMID:12417528
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:266,287,015...266,333,099
Ensembl chr 1:266,287,017...266,333,105
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Bbs4
Bardet-Biedl syndrome 4
ISO
(MGI:5525015|PMID:23943788)
RGD
PMID:23943788
MGI:5525015
NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
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Cep290
centrosomal protein 290
ISO
(MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (MGI:5525015|PMID:23943788)
RGD
PMID:16632484 PMID:16682973 PMID:23943788
MGI:3624140 MGI:3653539 MGI:5525015
NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
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Cetn1
centrin 1
ISO
(MGI:3525432|PMID:15347651), (MGI:6393223|PMID:30120214)
RGD
PMID:15347651 PMID:30120214
MGI:3525432 MGI:6393223
NCBI chr18:785,972...786,674
Ensembl chr18:785,972...786,674
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Cetn2
centrin 2
ISO
(MGI:3525432|PMID:15347651)
RGD
PMID:15347651
MGI:3525432
NCBI chr X:152,927,852...152,933,095
Ensembl chr X:152,927,718...152,932,953
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Cetn3
centrin 3
ISO
(MGI:3525432|PMID:15347651), (MGI:5303017|PMID:22031837), (MGI:5588761|PMID:24833722)
RGD
PMID:15347651 PMID:22031837 PMID:24833722
MGI:3525432 MGI:5303017 MGI:5588761
NCBI chr 2:12,101,473...12,115,009
Ensembl chr 2:12,102,487...12,115,009
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Cfap410
cilia and flagella associated protein 410
ISO
(MGI:5770162|PMID:26974433)
RGD
PMID:26974433
MGI:5770162
NCBI chr20:11,417,428...11,424,301
Ensembl chr20:11,417,429...11,424,324
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Fam161a
FAM161 centrosomal protein A
IDA IBA ISO
PMID:22940612 PMID:21873635 (MGI:5438885|PMID:22791751), (MGI:5442623|PMID:22940612), (MGI:5588761|PMID:24833722) (PMID:22940612)
RGD
PMID:22791751 PMID:22940612 PMID:24833722 , PMID:22940612 , PMID:21873635
MGI:5438885 MGI:5442623 MGI:5588761 , RGD:8553427 , RGD:13792537
NCBI chr14:107,785,029...107,803,765
Ensembl chr14:107,785,029...107,798,115
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Gnat1
G protein subunit alpha transducin 1
ISO
(MGI:3757777|PMID:17881533)
RGD
PMID:17881533
MGI:3757777
NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
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Ift122
intraflagellar transport 122
ISO
(MGI:3839506|PMID:19208653)
RGD
PMID:19208653
MGI:3839506
NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
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Ift140
intraflagellar transport 140
ISO
(MGI:4460838|PMID:20368623), (MGI:5604762|PMID:24619649)
RGD
PMID:20368623 PMID:24619649
MGI:4460838 MGI:5604762
NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
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Ift20
intraflagellar transport 20
ISO
(MGI:5317282|PMID:21307337)
RGD
PMID:21307337
MGI:5317282
NCBI chr10:65,805,808...65,811,353
Ensembl chr10:65,805,860...65,811,351
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Ift52
intraflagellar transport 52
ISO
(MGI:4460838|PMID:20368623)
RGD
PMID:20368623
MGI:4460838
NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
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Ift57
intraflagellar transport 57
ISO
(MGI:4460838|PMID:20368623)
RGD
PMID:20368623
MGI:4460838
NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779
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Ift88
intraflagellar transport 88
ISO
(MGI:3839506|PMID:19208653), (MGI:4460838|PMID:20368623)
RGD
PMID:19208653 PMID:20368623
MGI:3839506 MGI:4460838
NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
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Iqcb1
IQ motif containing B1
ISO
(PMID:15723066) (MGI:3763297|PMID:15723066)
RGD
PMID:15723066
MGI:3763297
NCBI chr11:66,824,059...66,878,585
Ensembl chr11:66,824,065...66,878,551
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Kif17
kinesin family member 17
ISO
(MGI:4353477|PMID:19384852)
RGD
PMID:19384852
MGI:4353477
NCBI chr 5:156,628,409...156,665,752
Ensembl chr 5:156,628,432...156,666,284
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Kif3a
kinesin family member 3a
ISO
(MGI:3839506|PMID:19208653)
RGD
PMID:19208653
MGI:3839506
NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
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Kifap3
kinesin-associated protein 3
ISO
(MGI:4353477|PMID:19384852)
RGD
PMID:19384852
MGI:4353477
NCBI chr13:82,072,497...82,217,256
Ensembl chr13:82,072,497...82,217,252
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Lca5
lebercilin LCA5
IDA ISO
PMID:17546029 (MGI:5050784|PMID:21606596) (PMID:21606596)
RGD
PMID:21606596 , PMID:17546029
MGI:5050784 , RGD:14397561
NCBI chr 8:90,926,309...90,984,271
Ensembl chr 8:90,926,311...90,984,224
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Mak
male germ cell-associated kinase
ISO
(MGI:5298333|PMID:21148103)
RGD
PMID:21148103
MGI:5298333
NCBI chr17:21,531,651...21,567,742
Ensembl chr17:21,521,505...21,568,440
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Myo7a
myosin VIIA
ISO
(MGI:1343017|PMID:10414956)
RGD
PMID:10414956
MGI:1343017
NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
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Nphp1
nephrocystin 1
ISO
(MGI:4821072|PMID:16885411)
RGD
PMID:16885411
MGI:4821072
NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
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Nphp4
nephrocystin 4
ISO
(MGI:4867588|PMID:21078623)
RGD
PMID:21078623
MGI:4867588
NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
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Pcdhb22
protocadherin beta 22
ISO
(MGI:3775581|PMID:18279309)
RGD
PMID:18279309
MGI:3775581
NCBI chr18:30,590,864...30,595,456
Ensembl chr18:30,592,794...30,595,181
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Pdzd7
PDZ domain containing 7
colocalizes_with
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
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RGD1306271
similar to KIAA1549 protein
ISO
(MGI:6393223|PMID:30120214)
RGD
PMID:30120214
MGI:6393223
NCBI chr 4:65,834,933...65,962,722
Ensembl chr 4:65,834,035...65,962,539
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Rp1
RP1, axonemal microtubule associated
ISO
(PMID:11767049) (MGI:2156902|PMID:11773008), (MGI:2676521|PMID:14507858)
RGD
PMID:11767049 PMID:11773008 PMID:14507858
MGI:2156902 MGI:2676521
NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
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Rp1l1
RP1 like 1
ISO
(MGI:4353917|PMID:19657028)
RGD
PMID:19657028
MGI:4353917
NCBI chr15:47,344,380...47,384,461
Ensembl chr15:47,373,120...47,383,508
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Rpgr
retinitis pigmentosa GTPase regulator
ISO
(MGI:1354839|PMID:10725384)
RGD
PMID:10725384
MGI:1354839
NCBI chr X:14,271,012...14,331,745
Ensembl chr X:14,271,017...14,331,486
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Rpgrip1
RPGR interacting protein 1
ISO
(MGI:5608598|PMID:25398945)
RGD
PMID:25398945
MGI:5608598
NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
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Rpgrip1l
Rpgrip1-like
IDA IBA
PMID:21873635
RGD GO_Central
PMID:17558407 , PMID:21873635
RGD:11537356 , RGD:13792537
NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
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Septin2
septin 2
ISO
(PMID:23572511)
RGD
PMID:23572511
NCBI chr 9:100,624,876...100,658,053
Ensembl chr 9:100,624,876...100,658,050
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Spata7
spermatogenesis associated 7
ISS ISO
GO_REF:0000024 (MGI:5608598|PMID:25398945)
UniProt RGD
PMID:25398945
GO_REF:0000024 MGI:5608598
NCBI chr 6:122,603,248...122,648,718
Ensembl chr 6:122,603,269...122,648,699
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Sptbn5
spectrin, beta, non-erythrocytic 5
ISO
(PMID:23704327)
RGD
PMID:23704327
NCBI chr 3:111,833,411...111,875,551
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Tbcc
tubulin folding cofactor C
ISO
(PMID:12417528)
RGD
PMID:12417528
NCBI chr 9:16,405,187...16,406,338
Ensembl chr 9:16,405,185...16,406,338
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Tmem237
transmembrane protein 237
ISO
(MGI:4830641|PMID:20375344)
RGD
PMID:20375344
MGI:4830641
NCBI chr 9:65,882,063...65,917,424
Ensembl chr 9:65,882,054...65,917,132
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Topors
TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase
ISO IBA
(PMID:21159800) PMID:21873635 (MGI:4939557|PMID:21159800)
RGD
PMID:21159800 , PMID:21873635
MGI:4939557 , RGD:13792537
NCBI chr 5:56,554,956...56,566,503
Ensembl chr 5:56,554,969...56,567,320
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Tsga10ip
testis specific 10 interacting protein
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:220,772,592...220,786,952
Ensembl chr 1:220,772,411...220,787,238
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Ttc8
tetratricopeptide repeat domain 8
ISO
(MGI:2677624|PMID:14520415)
RGD
PMID:14520415
MGI:2677624
NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522
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Ush1c
USH1 protein network component harmonin
colocalizes_with
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
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Ush1g
USH1 protein network component sans
ISO
(MGI:3774983|PMID:17906286)
RGD
PMID:17906286
MGI:3774983
NCBI chr10:103,866,566...103,873,416
Ensembl chr10:103,869,377...103,873,246
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Ush2a
usherin
colocalizes_with
IDA ISO
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183)
RGD
PMID:17906286 PMID:21212183 , PMID:16434480
MGI:3774983 MGI:4950337 , RGD:1600128
NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329
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Wdr19
WD repeat domain 19
ISO
(MGI:3839506|PMID:19208653)
RGD
PMID:19208653
MGI:3839506
NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
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Whrn
whirlin
colocalizes_with
IDA IBA ISO IEA
PMID:21873635 (MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) GO_REF:0000107
RGD Ensembl
PMID:17906286 PMID:21212183 , PMID:16434480 , PMID:21873635
GO_REF:0000107 MGI:3774983 MGI:4950337 , RGD:1600128 , RGD:13792537
NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
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Ahi1
Abelson helper integration site 1
ISO
(MGI:6194004|PMID:29899041)
RGD
PMID:29899041
MGI:6194004
NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
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Cep290
centrosomal protein 290
ISO
(MGI:6194004|PMID:29899041)
RGD
PMID:29899041
MGI:6194004
NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
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Nphp1
nephrocystin 1
ISO
(MGI:6194004|PMID:29899041)
RGD
PMID:29899041
MGI:6194004
NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
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Nphp4
nephrocystin 4
ISO
(MGI:6194004|PMID:29899041)
RGD
PMID:29899041
MGI:6194004
NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
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Rpgr
retinitis pigmentosa GTPase regulator
ISO
(MGI:6194004|PMID:29899041)
RGD
PMID:29899041
MGI:6194004
NCBI chr X:14,271,012...14,331,745
Ensembl chr X:14,271,017...14,331,486
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Rpgrip1
RPGR interacting protein 1
ISO
(MGI:6194004|PMID:29899041)
RGD
PMID:29899041
MGI:6194004
NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
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Spata7
spermatogenesis associated 7
IEA IBA ISO
GO_REF:0000107 PMID:21873635 MGI:5660490 (MGI:6194004|PMID:29899041)
Ensembl RGD
PMID:29899041 , PMID:21873635
GO_REF:0000107 MGI:6194004 , RGD:13792537
NCBI chr 6:122,603,248...122,648,718
Ensembl chr 6:122,603,269...122,648,699
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Cep290
centrosomal protein 290
ISO
(MGI:6194004|PMID:29899041)
RGD
PMID:29899041
MGI:6194004
NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
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