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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor connecting cilium
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Accession:GO:0032391 term browser browse the term
Definition:The portion of the photoreceptor cell cilium linking the photoreceptor inner and outer segments. It's considered to be equivalent to the ciliary transition zone.
Synonyms:related_synonym: photoreceptor cilium



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photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053509.2 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 3:107,013,265...107,054,324 JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (MGI:3774983|PMID:17906286) RGD PMID:17906286 MGI:3774983 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
JBrowse link
G Alpk1 alpha-kinase 1 located_in ISO (MGI:6717246|PMID:30967659) RGD PMID:30967659 MGI:6717246 NCBI chr 2:216,126,939...216,247,180
Ensembl chr 2:216,128,825...216,247,157
JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:12417528)
UniProt
Ensembl
RGD
PMID:12417528 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:245,400,659...245,446,673
Ensembl chr 1:245,400,550...245,446,820
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (MGI:5525015|PMID:23943788) RGD PMID:16632484 PMID:16682973 PMID:23943788 MGI:3624140 MGI:3653539 MGI:5525015 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Cetn1 centrin 1 located_in ISO (MGI:3525432|PMID:15347651), (MGI:6393223|PMID:30120214) RGD PMID:15347651 PMID:30120214 MGI:3525432 MGI:6393223 NCBI chr18:651,591...652,293
Ensembl chr18:651,591...652,293
JBrowse link
G Cetn2 centrin 2 located_in ISO (MGI:3525432|PMID:15347651) RGD PMID:15347651 MGI:3525432 NCBI chr  X:150,769,944...150,775,052
Ensembl chr  X:150,769,953...150,774,919
JBrowse link
G Cetn3 centrin 3 located_in ISO (MGI:3525432|PMID:15347651), (MGI:5303017|PMID:22031837), (MGI:5588761|PMID:24833722) RGD PMID:15347651 PMID:22031837 PMID:24833722 MGI:3525432 MGI:5303017 MGI:5588761 NCBI chr 2:12,089,025...12,101,828
Ensembl chr 2:12,089,226...12,101,828
JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (MGI:5770162|PMID:26974433) RGD PMID:26974433 MGI:5770162 NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737
JBrowse link
G Fam161a FAM161 centrosomal protein A located_in
is_active_in
IDA
IBA
ISO
PMID:22940612
PMID:21873635
(MGI:5438885|PMID:22791751), (MGI:5442623|PMID:22940612), (MGI:5588761|PMID:24833722)
(PMID:22940612)
RGD PMID:22791751 PMID:22940612 PMID:24833722 PMID:22940612 PMID:21873635 MGI:5438885 MGI:5442623 MGI:5588761, RGD:8553427, RGD:13792537 NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO (MGI:3757777|PMID:17881533) RGD PMID:17881533 MGI:3757777 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Ift122 intraflagellar transport 122 located_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (MGI:4460838|PMID:20368623), (MGI:5604762|PMID:24619649) RGD PMID:20368623 PMID:24619649 MGI:4460838 MGI:5604762 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (MGI:5317282|PMID:21307337) RGD PMID:21307337 MGI:5317282 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (MGI:4460838|PMID:20368623) RGD PMID:20368623 MGI:4460838 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980
JBrowse link
G Ift57 intraflagellar transport 57 located_in ISO (MGI:4460838|PMID:20368623) RGD PMID:20368623 MGI:4460838 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812
JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (MGI:3839506|PMID:19208653), (MGI:4460838|PMID:20368623) RGD PMID:19208653 PMID:20368623 MGI:3839506 MGI:4460838 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (PMID:15723066)
(MGI:3763297|PMID:15723066)
RGD PMID:15723066 MGI:3763297 NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093
JBrowse link
G Kif17 kinesin family member 17 located_in ISO (MGI:4353477|PMID:19384852) RGD PMID:19384852 MGI:4353477 NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638
JBrowse link
G Kif3a kinesin family member 3a located_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191
JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (MGI:4353477|PMID:19384852) RGD PMID:19384852 MGI:4353477 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650
JBrowse link
G Lca5 lebercilin LCA5 located_in ISO
IDA
(PMID:21606596)
(MGI:5050784|PMID:21606596)
PMID:17546029
RGD PMID:21606596 PMID:17546029 MGI:5050784, RGD:14397561 NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956
JBrowse link
G Mak male germ cell-associated kinase located_in ISO (MGI:5298333|PMID:21148103) RGD PMID:21148103 MGI:5298333 NCBI chr17:23,683,674...23,731,125
Ensembl chr17:23,693,878...23,730,001
JBrowse link
G Myo7a myosin VIIA located_in ISO (MGI:1343017|PMID:10414956) RGD PMID:10414956 MGI:1343017 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (MGI:4821072|PMID:16885411) RGD PMID:16885411 MGI:4821072 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (MGI:4867588|PMID:21078623) RGD PMID:21078623 MGI:4867588 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
JBrowse link
G Pcdhb22 protocadherin beta 22 located_in ISO (MGI:3775581|PMID:18279309) RGD PMID:18279309 MGI:3775581 Ensembl chr18:29,223,149...29,225,536 JBrowse link
G Pdzd7 PDZ domain containing 7 colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:243,888,295...243,907,778
Ensembl chr 1:243,888,281...243,906,839
JBrowse link
G RGD1306271 similar to KIAA1549 protein located_in ISO (MGI:6393223|PMID:30120214) RGD PMID:30120214 MGI:6393223 NCBI chr 4:66,840,674...66,968,407
Ensembl chr 4:66,760,162...66,968,436
JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (MGI:2156902|PMID:11773008), (MGI:2676521|PMID:14507858)
(PMID:11767049)
RGD PMID:11767049 PMID:11773008 PMID:14507858 MGI:2156902 MGI:2676521 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (MGI:4353917|PMID:19657028) RGD PMID:19657028 MGI:4353917 NCBI chr15:38,259,595...38,271,269
Ensembl chr15:38,259,928...38,270,316
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (MGI:1354839|PMID:10725384) RGD PMID:10725384 MGI:1354839 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (MGI:5608598|PMID:25398945) RGD PMID:25398945 MGI:5608598 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Rpgrip1l Rpgrip1-like is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:17558407 PMID:21873635 RGD:11537356, RGD:13792537 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) RGD PMID:23572511 NCBI chr 9:94,018,141...94,051,386
Ensembl chr 9:94,018,208...94,051,386
JBrowse link
G Spata7 spermatogenesis associated 7 located_in ISS
ISO
GO_REF:0000024
(MGI:5608598|PMID:25398945)
UniProt
RGD
PMID:25398945 GO_REF:0000024 MGI:5608598 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 located_in ISO
IEA
(PMID:23704327)
GO_REF:0000107
RGD
Ensembl
PMID:23704327 GO_REF:0000107 NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324
JBrowse link
G Tbcc tubulin folding cofactor C located_in ISO (PMID:12417528) RGD PMID:12417528 NCBI chr 9:14,098,875...14,100,026
Ensembl chr 9:14,098,868...14,100,042
JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (MGI:4830641|PMID:20375344) RGD PMID:20375344 MGI:4830641 NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567
JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in
is_active_in
ISO
IBA
(PMID:21159800)
PMID:21873635
(MGI:4939557|PMID:21159800)
RGD PMID:21159800 PMID:21873635 MGI:4939557, RGD:13792537 NCBI chr 5:55,388,033...55,399,937
Ensembl chr 5:55,387,632...55,399,937
JBrowse link
G Tsga10ip testis specific 10 interacting protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,700,576...202,714,668
Ensembl chr 1:202,700,578...202,714,798
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 located_in ISO (MGI:2677624|PMID:14520415) RGD PMID:14520415 MGI:2677624 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
JBrowse link
G Ush1c USH1 protein network component harmonin colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (MGI:3774983|PMID:17906286) RGD PMID:17906286 MGI:3774983 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
JBrowse link
G Ush2a usherin colocalizes_with
located_in
IDA
IEA
ISO
GO_REF:0000107
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183)
Ensembl
RGD
PMID:17906286 PMID:21212183 PMID:16434480 GO_REF:0000107 MGI:3774983 MGI:4950337, RGD:1600128 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
JBrowse link
G Wdr19 WD repeat domain 19 located_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
JBrowse link
G Whrn whirlin colocalizes_with
located_in
IDA
ISO
IEA
IBA
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:17906286 PMID:21212183 PMID:16434480 PMID:21873635 GO_REF:0000107 MGI:3774983 MGI:4950337, RGD:1600128, RGD:13792537 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Spata7 spermatogenesis associated 7 is_active_in
located_in
IBA
ISO
IEA
PMID:21873635
MGI:5660490 (MGI:6194004|PMID:29899041)
GO_REF:0000107
RGD
Ensembl
PMID:29899041 PMID:21873635 GO_REF:0000107 MGI:6194004, RGD:13792537 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20305
    cellular anatomical entity 20020
      ciliary transition zone 79
        photoreceptor connecting cilium 49
          photoreceptor distal connecting cilium 7
          photoreceptor proximal connecting cilium 1
Path 2
Term Annotations click to browse term
  cellular_component 20305
    cellular anatomical entity 20020
      cell projection 2610
        plasma membrane bounded cell projection 2533
          cilium 726
            non-motile cilium 178
              9+0 non-motile cilium 138
                photoreceptor cell cilium 124
                  photoreceptor connecting cilium 49
                    photoreceptor distal connecting cilium 7
                    photoreceptor proximal connecting cilium 1
paths to the root