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ONTOLOGY REPORT - ANNOTATIONS


Term:oxidized DNA binding
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Accession:GO:0032356 term browser browse the term
Definition:Binding to a DNA region containing an oxidized residue.
Synonyms:exact_synonym: oxidised DNA binding



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oxidized DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xrcc1 X-ray repair cross complementing 1 enables ISO (PMID:28002403) RGD PMID:28002403 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
8-hydroxy-2'-deoxyguanosine DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Pot1 protection of telomeres 1 enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042
JBrowse link
G Wrn WRN RecQ like helicase enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
oxidized purine DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh2 mutS homolog 2 contributes_to
enables
ISO
IEA
IBA
(PMID:11756455), (PMID:11801590)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:11756455 PMID:11801590 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 NOT|contributes_to ISO (PMID:11756455) RGD PMID:11756455 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh6 mutS homolog 6 contributes_to ISO
IBA
(PMID:11756455), (PMID:11801590)
PMID:21873635
RGD PMID:11756455 PMID:11801590 PMID:21873635 RGD:13792537 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Mutyh mutY DNA glycosylase enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,274,034...130,286,149
Ensembl chr 5:130,274,122...130,286,146
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase enables ISO (PMID:14706345) RGD PMID:14706345 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Recql4 RecQ like helicase 4 enables ISO (PMID:22039056) RGD PMID:22039056 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Rps3 ribosomal protein S3 enables ISO (PMID:14706345) RGD PMID:14706345 NCBI chr 1:153,778,363...153,783,663
Ensembl chr 1:153,777,472...153,783,680
JBrowse link
oxidized pyrimidine DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rps3 ribosomal protein S3 enables ISO (PMID:19656744) RGD PMID:19656744 NCBI chr 1:153,778,363...153,783,663
Ensembl chr 1:153,777,472...153,783,680
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19921
    binding 17010
      heterocyclic compound binding 5641
        nucleic acid binding 3569
          DNA binding 2217
            damaged DNA binding 64
              oxidized DNA binding 11
                oxidized purine DNA binding + 10
                oxidized pyrimidine DNA binding 1
paths to the root