Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:dense core granule localization
go back to main search page
Accession:GO:0032253 term browser browse the term
Definition:Any process in which a dense core granule is transported to, and/or maintained in, a specific location within the cell.
Synonyms:exact_synonym: dense core granule localisation;   dense core vesicle localization
 related_synonym: dense core granule clustering


show annotations for term's descendants           Sort by:
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:92,943,180...93,029,760
Ensembl chr 1:92,943,186...93,029,673 		JBrowse link
G Kif1b kinesin family member 1B involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 4:149,260,776...149,392,762
Ensembl chr 4:149,260,776...149,392,150 		JBrowse link
G Kif1c kinesin family member 1C involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:70,591,170...70,622,796
Ensembl chr11:70,591,374...70,622,790 		JBrowse link
G Sybu syntabulin (syntaxin-interacting) involved_in ISO RGD
MGI		 PMID:17611281 GO_REF:0000096 MGI:4417868 RGD:13217407 NCBI chr15:44,535,252...44,651,466
Ensembl chr15:44,535,252...44,651,459 		JBrowse link
dense core granule cytoskeletal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:92,943,180...93,029,760
Ensembl chr 1:92,943,186...93,029,673 		JBrowse link
G Ppfia2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:106,305,129...106,769,329
Ensembl chr10:106,306,200...106,771,813 		JBrowse link
G Syt4 synaptotagmin IV involved_in IMP
ISO		 (MGI:6104122|PMID:29166604) UniProt
MGI		 PMID:29166604 GO_REF:0000096 MGI:4417868 MGI:6104122 NCBI chr18:31,570,861...31,580,468
Ensembl chr18:31,570,861...31,580,459 		JBrowse link
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:105,480,458...105,820,130
Ensembl chr11:105,480,812...105,820,130 		JBrowse link
dense core granule docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Unc13a unc-13 homolog A NOT|involved_in IGI (MGI:5819330|PMID:26575293) SynGO-UCL PMID:26575293 MGI:5819330 NCBI chr 8:72,079,356...72,124,418
Ensembl chr 8:72,077,061...72,124,401 		JBrowse link
G Unc13b unc-13 homolog B NOT|involved_in IGI (MGI:5819330|PMID:26575293) SynGO-UCL PMID:26575293 MGI:5819330 NCBI chr 4:43,046,193...43,264,873
Ensembl chr 4:43,058,953...43,264,871 		JBrowse link
dense core granule exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cadps Ca2+-dependent secretion activator involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr14:9,646,424...10,097,203
Ensembl chr14:9,646,684...10,097,200 		JBrowse link
G Cadps2 Ca2+-dependent activator protein for secretion 2 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 6:23,262,765...23,840,662
Ensembl chr 6:23,262,772...23,839,420 		JBrowse link
dense core granule priming term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Unc13a unc-13 homolog A involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr 8:72,079,356...72,124,418
Ensembl chr 8:72,077,061...72,124,401 		JBrowse link
G Unc13b unc-13 homolog B involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr 4:43,046,193...43,264,873
Ensembl chr 4:43,058,953...43,264,871 		JBrowse link
G Unc13c unc-13 homolog C involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:73,386,704...73,915,421
Ensembl chr 9:73,386,704...73,876,248 		JBrowse link
G Unc13d unc-13 homolog D involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:115,952,921...115,969,321
Ensembl chr11:115,952,921...115,968,787 		JBrowse link
negative regulation of dense core granule exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin IV involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr18:31,570,861...31,580,468
Ensembl chr18:31,570,861...31,580,459 		JBrowse link
neuronal dense core vesicle exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Unc13a unc-13 homolog A involved_in IMP (MGI:5476894|PMID:23229896) UniProt PMID:23229896 MGI:5476894 NCBI chr 8:72,079,356...72,124,418
Ensembl chr 8:72,077,061...72,124,401 		JBrowse link
G Unc13b unc-13 homolog B involved_in IMP (MGI:5476894|PMID:23229896) UniProt PMID:23229896 MGI:5476894 NCBI chr 4:43,046,193...43,264,873
Ensembl chr 4:43,058,953...43,264,871 		JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule-associated protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:66,214,337...66,481,742
Ensembl chr 1:66,214,432...66,481,742 		JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in ISO RGD
MGI		 PMID:22127389 GO_REF:0000096 MGI:4417868 RGD:12790715 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,129,296 		JBrowse link
G Trim46 tripartite motif-containing 46 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 3:89,141,476...89,153,655
Ensembl chr 3:89,141,484...89,153,616 		JBrowse link
positive regulation of dense core granule exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin IV involved_in IMP (MGI:3795609|PMID:18468511) ParkinsonsUK-UCL PMID:18468511 MGI:3795609 NCBI chr18:31,570,861...31,580,468
Ensembl chr18:31,570,861...31,580,459 		JBrowse link
positive regulation of dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eipr1 EARP complex and GARP complex interacting protein 1 involved_in ISS (MGI:5787844|PMID:27191843) UniProt PMID:27191843 MGI:5787844 NCBI chr12:28,801,802...28,917,493
Ensembl chr12:28,801,802...28,919,864 		JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl CpG binding protein 2 involved_in ISO RGD
MGI		 PMID:22127389 GO_REF:0000096 MGI:4417868 RGD:12790715 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,129,296 		JBrowse link
postsynaptic dense core vesicle exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt6 synaptotagmin VI involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 3:103,482,561...103,552,883
Ensembl chr 3:103,482,547...103,552,885 		JBrowse link
presynaptic dense core vesicle exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cadps Ca2+-dependent secretion activator involved_in IGI
IDA
IMP		 (MGI:5634021|PMID:25719439)
(PMID:25719439)		 SynGO PMID:25719439 MGI:5634021 NCBI chr14:9,646,424...10,097,203
Ensembl chr14:9,646,684...10,097,200 		JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 involved_in IEP
IMP
IDA		 (PMID:31679900) SynGO PMID:31679900 NCBI chr 1:22,356,196...22,845,239
Ensembl chr 1:22,356,475...22,845,203 		JBrowse link
G Snap25 synaptosomal-associated protein 25 involved_in IEP
IDA
IMP		 (PMID:28404788) SynGO PMID:28404788 NCBI chr 2:136,555,359...136,624,348
Ensembl chr 2:136,555,373...136,624,348 		JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in IMP (MGI:3621672|PMID:11545717) SynGO PMID:11545717 MGI:3621672 NCBI chr 2:32,677,619...32,737,249
Ensembl chr 2:32,677,614...32,737,257 		JBrowse link
G Syt10 synaptotagmin X involved_in IMP
IDA		 (PMID:28683263) SynGO PMID:28683263 NCBI chr15:89,657,221...89,726,181
Ensembl chr15:89,666,596...89,726,063 		JBrowse link
G Unc13a unc-13 homolog A involved_in IGI
IBA		 (MGI:5819330|PMID:26575293) SynGO
GO_Central		 PMID:26575293 GO_REF:0000033 MGI:5819330 NCBI chr 8:72,079,356...72,124,418
Ensembl chr 8:72,077,061...72,124,401 		JBrowse link
G Unc13b unc-13 homolog B involved_in IMP
IBA		 (MGI:5819330|PMID:26575293) SynGO
GO_Central		 PMID:26575293 GO_REF:0000033 MGI:5819330 NCBI chr 4:43,046,193...43,264,873
Ensembl chr 4:43,058,953...43,264,871 		JBrowse link
G Unc13c unc-13 homolog C involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:73,386,704...73,915,421
Ensembl chr 9:73,386,704...73,876,248 		JBrowse link
regulation of dense core granule exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baiap3 BAI1-associated protein 3 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr17:25,461,633...25,475,255
Ensembl chr17:25,461,633...25,475,338 		JBrowse link
regulation of dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk8 mitogen-activated protein kinase 8 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr14:33,099,855...33,169,213
Ensembl chr14:33,099,855...33,169,115 		JBrowse link
regulation of postsynaptic dense core vesicle exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin IV involved_in IDA
EXP
IMP		 (PMID:19448629) SynGO PMID:19448629 NCBI chr18:31,570,861...31,580,468
Ensembl chr18:31,570,861...31,580,459 		JBrowse link
regulation of presynaptic dense core granule exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2rx7 purinergic receptor P2X, ligand-gated ion channel, 7 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 5:122,781,990...122,830,399
Ensembl chr 5:122,781,974...122,829,495 		JBrowse link
G Rab11b RAB11B, member RAS oncogene family involved_in ISO PMID:14627637 SynGO PMID:14627637 RGD:8554199 NCBI chr17:33,961,458...33,979,460
Ensembl chr17:33,961,458...33,979,504 		JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in IMP
IEP
IDA		 (PMID:31679900) SynGO PMID:31679900 NCBI chr 8:71,207,258...71,211,276
Ensembl chr 8:71,207,328...71,211,323 		JBrowse link
G Unc13b unc-13 homolog B involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 4:43,046,193...43,264,873
Ensembl chr 4:43,058,953...43,264,871 		JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:92,943,180...93,029,760
Ensembl chr 1:92,943,186...93,029,673 		JBrowse link
G Kif1b kinesin family member 1B involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 4:149,260,776...149,392,762
Ensembl chr 4:149,260,776...149,392,150 		JBrowse link
G Kif1c kinesin family member 1C involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:70,591,170...70,622,796
Ensembl chr11:70,591,374...70,622,790 		JBrowse link
G Kif5a kinesin family member 5A involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr10:127,061,564...127,102,217
Ensembl chr10:127,061,565...127,099,217 		JBrowse link
G Kif5b kinesin family member 5B involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr18:6,201,005...6,241,524
Ensembl chr18:6,201,002...6,242,174 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28697
    localization 5604
      organelle localization 655
        vesicle localization 224
          secretory granule localization 35
            dense core granule localization 29
              dense core granule exocytosis + 16
              dense core granule transport + 14
              establishment of dense core granule localization 0
              maintenance of dense core granule location 0
paths to the root