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ONTOLOGY REPORT - ANNOTATIONS

Term:retrotransposition
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Accession:GO:0032197 term browser browse the term
Definition:A type of transposition in which a transposable element (transposon) copies and pastes itself into a different genomic location by transcription and convertsion of the transcribed RNA back into DNA through reverse transcription.
Synonyms:exact_synonym: Class I transposition;   RNA-mediated transposition;   retrotransposon transposition;   transposition via RNA intermediate
 narrow_synonym: Tf transposition;   Ty element transposition;   Ty1 element transposition;   Ty2 element transposition;   Ty3 element transposition
 alt_id: GO:0006319;   GO:0006320;   GO:0006321;   GO:0006322
 xref: Wikipedia:Transposon##Class_I\:_Retrotransposons

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retrotransposition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of ISO (PMID:25503965) MGI PMID:25503965 NCBI chrNW_004955427:9,790,069...9,974,140
Ensembl chrNW_004955427:9,789,971...9,968,613 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (PMID:28835460) MGI PMID:28835460 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767 		JBrowse link
piRNA-mediated retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx4 DEAD-box helicase 4 acts_upstream_of_positive_effect ISO (MGI:5908740|PMID:28633017) UniProt PMID:28633017 MGI:5908740 NCBI chrNW_004955446:11,967,222...12,025,537
Ensembl chrNW_004955446:11,967,322...12,024,587 		JBrowse link
G Piwil1 piwi like RNA-mediated gene silencing 1 involved_in ISO (MGI:5316869|PMID:22121019) UniProt PMID:22121019 MGI:5316869 NCBI chrNW_004955482:1,435,925...1,451,067
Ensembl chrNW_004955482:1,435,925...1,450,857 		JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 acts_upstream_of_positive_effect ISO (MGI:5501381|PMID:23706823) UniProt PMID:23706823 MGI:5501381 NCBI chrNW_004955403:45,737,674...45,819,478
Ensembl chrNW_004955403:45,737,674...45,819,873 		JBrowse link
G Spocd1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) UniProt PMID:32674113 MGI:6453929 NCBI chrNW_004955452:10,192,076...10,214,914 JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISO (MGI:5908740|PMID:28633017) UniProt PMID:28633017 MGI:5908740 NCBI chrNW_004955538:2,667,219...2,749,805
Ensembl chrNW_004955538:2,667,299...2,749,248 		JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6447460|PMID:32719317) UniProt PMID:32719317 MGI:6447460 NCBI chrNW_004955463:7,296,204...7,360,935
Ensembl chrNW_004955463:7,298,030...7,360,971 		JBrowse link
retrotransposon silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in ISO (MGI:4356194|PMID:19730684) UniProt PMID:19730684 MGI:4356194 NCBI chrNW_004955432:23,059,462...23,119,421
Ensembl chrNW_004955432:23,060,657...23,119,427 		JBrowse link
G Btbd18 BTB domain containing 18 acts_upstream_of_positive_effect ISO (MGI:5882241|PMID:28292424) UniProt PMID:28292424 MGI:5882241 NCBI chrNW_004955511:2,641,848...2,647,679
Ensembl chrNW_004955511:2,640,647...2,648,768 		JBrowse link
G Mov10 Mov10 RNA helicase involved_in ISO (MGI:6099622|PMID:28662698)
(PMID:23093941)		 UniProt PMID:23093941 PMID:28662698 MGI:6099622 NCBI chrNW_004955435:16,093,471...16,114,735
Ensembl chrNW_004955435:16,092,790...16,117,206 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6303534|PMID:30853213)
(MGI:6214653|PMID:25247314)		 UniProt PMID:25247314 PMID:30853213 MGI:6214653 MGI:6303534 NCBI chrNW_004955495:4,641,883...4,650,518
Ensembl chrNW_004955495:4,644,023...4,650,083 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISO (MGI:6377981|PMID:31226208) UniProt PMID:31226208 MGI:6377981 NCBI chrNW_004955506:1,252,271...1,258,728
Ensembl chrNW_004955506:1,252,274...1,258,728 		JBrowse link
G Tdrd9 tudor domain containing 9 acts_upstream_of_or_within ISO (PMID:27473657) MGI PMID:27473657 NCBI chrNW_004955538:2,667,219...2,749,805
Ensembl chrNW_004955538:2,667,299...2,749,248 		JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6434559|PMID:32381626) UniProt PMID:32381626 MGI:6434559 NCBI chrNW_004955463:7,296,204...7,360,935
Ensembl chrNW_004955463:7,298,030...7,360,971 		JBrowse link
G Tex19 testis expressed 19 involved_in ISO (PMID:28806172) UniProt PMID:28806172 NCBI chrNW_004955506:773,128...775,155 JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (MGI:5912961|PMID:28806172) UniProt PMID:28806172 MGI:5912961 NCBI chrNW_004955437:8,678,212...8,780,700
Ensembl chrNW_004955437:8,677,801...8,782,120 		JBrowse link
retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (PMID:27856912) MGI PMID:27856912 NCBI chrNW_004955422:28,380,595...28,427,012
Ensembl chrNW_004955422:28,380,591...28,421,301 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in
acts_upstream_of_or_within		 ISO (MGI:3054275|PMID:15318244)
(PMID:25503965)		 UniProt
MGI		 PMID:15318244 PMID:25503965 MGI:3054275 NCBI chrNW_004955407:41,177,582...41,186,965
Ensembl chrNW_004955407:41,177,582...41,186,965 		JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO (PMID:25503965) MGI PMID:25503965 NCBI chrNW_004955427:9,790,069...9,974,140
Ensembl chrNW_004955427:9,789,971...9,968,613 		JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 acts_upstream_of_positive_effect ISO (MGI:5319753|PMID:22020280) UniProt PMID:22020280 MGI:5319753 NCBI chrNW_004955403:45,737,674...45,819,478
Ensembl chrNW_004955403:45,737,674...45,819,873 		JBrowse link
G Piwil4 piwi like RNA-mediated gene silencing 4 acts_upstream_of_positive_effect
acts_upstream_of_or_within		 ISO (MGI:5319753|PMID:22020280)
(PMID:25503965)		 UniProt
MGI		 PMID:22020280 PMID:25503965 MGI:5319753 NCBI chrNW_004955605:331,633...398,528 JBrowse link
G Smyd5 SMYD family member 5 involved_in ISO (PMID:28951459)
(MGI:6103640|PMID:28951459)		 UniProt PMID:28951459 MGI:6103640 NCBI chrNW_004955424:12,408,059...12,422,424
Ensembl chrNW_004955424:12,408,059...12,423,164 		JBrowse link
retrotransposon silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mov10 Mov10 RNA helicase involved_in ISO (PMID:30122351) UniProt PMID:30122351 NCBI chrNW_004955435:16,093,471...16,114,735
Ensembl chrNW_004955435:16,092,790...16,117,206 		JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 involved_in ISO (MGI:3815367|PMID:18922463) UniProt PMID:18922463 MGI:3815367 NCBI chrNW_004955403:45,737,674...45,819,478
Ensembl chrNW_004955403:45,737,674...45,819,873 		JBrowse link
G Piwil4 piwi like RNA-mediated gene silencing 4 involved_in ISO (MGI:3815367|PMID:18922463) UniProt PMID:18922463 MGI:3815367 NCBI chrNW_004955605:331,633...398,528 JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:30122351) UniProt PMID:30122351 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066 		JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:30122351) UniProt PMID:30122351 NCBI chrNW_004955432:1,268,217...1,330,385
Ensembl chrNW_004955432:1,268,103...1,329,436 		JBrowse link
siRNA-mediated retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx4 DEAD-box helicase 4 involved_in ISO (MGI:4443217|PMID:20439430) UniProt PMID:20439430 MGI:4443217 NCBI chrNW_004955446:11,967,222...12,025,537
Ensembl chrNW_004955446:11,967,322...12,024,587 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 (inactive) involved_in ISO (MGI:5439219|PMID:22902560) UniProt PMID:22902560 MGI:5439219 NCBI chrNW_004955456:14,291,445...14,318,310
Ensembl chrNW_004955456:14,291,260...14,318,310 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in ISO (MGI:4417983|PMID:20011505) UniProt PMID:20011505 MGI:4417983 NCBI chrNW_004955462:9,902,978...9,934,814
Ensembl chrNW_004955462:9,903,006...9,934,570 		JBrowse link
G Mov10l1 Mov10 like RNA helicase 1 involved_in ISO (MGI:4457283|PMID:20534472) UniProt PMID:20534472 MGI:4457283 NCBI chrNW_004955413:33,142,857...33,208,897
Ensembl chrNW_004955413:33,142,918...33,208,329 		JBrowse link
G Mybl1 MYB proto-oncogene like 1 acts_upstream_of_positive_effect ISO (MGI:5495879|PMID:23523368) UniProt PMID:23523368 MGI:5495879 NCBI chrNW_004955444:12,589,464...12,620,602
Ensembl chrNW_004955444:12,589,464...12,620,663 		JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 involved_in ISO (MGI:3778312|PMID:18381894) UniProt PMID:18381894 MGI:3778312 NCBI chrNW_004955403:45,737,674...45,819,478
Ensembl chrNW_004955403:45,737,674...45,819,873 		JBrowse link
G Piwil4 piwi like RNA-mediated gene silencing 4 involved_in ISO (MGI:3778312|PMID:18381894) UniProt PMID:18381894 MGI:3778312 NCBI chrNW_004955605:331,633...398,528 JBrowse link
G Tdrd1 tudor domain containing 1 involved_in ISO (MGI:4356231|PMID:19465913) UniProt PMID:19465913 MGI:4356231 NCBI chrNW_004955431:19,173,336...19,218,183
Ensembl chrNW_004955431:19,173,234...19,218,290 		JBrowse link
G Tdrd12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) UniProt PMID:24067652 MGI:5516419 NCBI chrNW_004955468:5,201,216...5,277,062
Ensembl chrNW_004955468:5,141,077...5,275,748 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in ISO (MGI:4946318|PMID:21383078) UniProt PMID:21383078 MGI:4946318 NCBI chrNW_004955406:18,895,010...18,961,200
Ensembl chrNW_004955406:18,895,011...18,962,333 		JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISO (MGI:4418580|PMID:20059948) UniProt PMID:20059948 MGI:4418580 NCBI chrNW_004955538:2,667,219...2,749,805
Ensembl chrNW_004955538:2,667,299...2,749,248 		JBrowse link
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  biological_process 12321
    cellular process 11505
      transposition 30
        retrotransposition 28
          retrotransposon silencing + 27
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