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ONTOLOGY REPORT - ANNOTATIONS

Term:retrotransposition
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Accession:GO:0032197 term browser browse the term
Definition:A type of transposition in which a transposable element (transposon) copies and pastes itself into a different genomic location by transcription and convertsion of the transcribed RNA back into DNA through reverse transcription.
Synonyms:exact_synonym: Class I transposition;   RNA-mediated transposition;   retrotransposon transposition;   transposition via RNA intermediate
 narrow_synonym: Tf transposition;   Ty element transposition;   Ty1 element transposition;   Ty2 element transposition;   Ty3 element transposition
 alt_id: GO:0006319;   GO:0006320;   GO:0006321;   GO:0006322
 xref: Wikipedia:Transposon##Class_I\:_Retrotransposons


show annotations for term's descendants           Sort by:
retrotransposition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07004232.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:18,937,773...18,938,846 JBrowse link
G AABR07008681.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:60,024,969...60,032,699 JBrowse link
G AABR07011733.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:86,949,188...86,950,375 JBrowse link
G AABR07013425.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:197,901,214...197,902,287 JBrowse link
G AABR07018132.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:62,422,113...62,423,186 JBrowse link
G AABR07018556.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:62,426,733...62,427,809 JBrowse link
G AABR07038567.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:68,611,722...68,612,081 JBrowse link
G AABR07043115.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:22,522,097...22,530,871 JBrowse link
G AABR07064590.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:265,208...266,329 JBrowse link
G AABR07064622.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:45,848,219...45,849,292 JBrowse link
G AC132740.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:63,776,402...63,777,523 JBrowse link
G ENSRNOG00000063521 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:32,242,694...32,243,836 JBrowse link
G ENSRNOG00000069050 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:10,307,774...10,308,847 JBrowse link
G ENSRNOG00000069224 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:122,562,810...122,563,931 JBrowse link
G Hsd11b1l1 hydroxysteroid 11-beta dehydrogenase 1 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:41,909,767...41,932,712
Ensembl chr20:41,909,761...41,932,712 		JBrowse link
G L1td1 LINE-1 type transposase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:113,373,193...113,386,088
Ensembl chr 5:113,379,870...113,385,730 		JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255 		JBrowse link
G Rpl19l4 ribosomal protein L19 like 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:16,880,899...16,898,782
Ensembl chr 5:16,880,899...16,896,524 		JBrowse link
G Serinc1 serine incorporator 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:36,850,062...36,868,999
Ensembl chr20:36,850,076...36,896,691 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:6103025|PMID:28835460) RGD PMID:28835460 MGI:6103025 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
G Vom2r52l1 vomeronasal 2 receptor, 52 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:12,194,767...12,207,125
Ensembl chr18:12,194,767...12,207,125 		JBrowse link
piRNA-mediated retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx4 DEAD-box helicase 4 acts_upstream_of_positive_effect
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:5908740|PMID:28633017)		 UniProt
RGD		 PMID:28633017 GO_REF:0000024 MGI:5908740 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723 		JBrowse link
G Dnmt3c DNA methyltransferase 3C involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 3:142,178,533...142,210,954 JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5316869|PMID:22121019) RGD PMID:22121019 MGI:5316869 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 acts_upstream_of_or_within ISO (MGI:5501381|PMID:23706823) RGD PMID:23706823 MGI:5501381 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5908740|PMID:28633017)		 UniProt
RGD		 PMID:28633017 GO_REF:0000024 MGI:5908740 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651 		JBrowse link
retrotransposon silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:18779051), (PMID:18827027)
(MGI:5285175|PMID:16527742)		 UniProt
RGD		 PMID:16527742 PMID:18779051 PMID:18827027 GO_REF:0000024 MGI:5285175 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in ISO (MGI:4356194|PMID:19730684) RGD PMID:19730684 MGI:4356194 NCBI chr 4:46,400,485...46,456,085
Ensembl chr 4:46,400,485...46,456,085 		JBrowse link
G Btbd18 BTB domain containing 18 acts_upstream_of_or_within ISO (MGI:5882241|PMID:28292424) RGD PMID:28292424 MGI:5882241 NCBI chr 3:69,743,057...69,751,096
Ensembl chr 3:69,745,012...69,751,042 		JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (MGI:6099622|PMID:28662698)
(PMID:23093941)		 RGD PMID:23093941 PMID:28662698 MGI:6099622 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6214653|PMID:25247314), (MGI:6303534|PMID:30853213) RGD PMID:25247314 PMID:30853213 MGI:6214653 MGI:6303534 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6377981|PMID:31226208)		 UniProt
RGD		 PMID:31226208 GO_REF:0000024 MGI:6377981 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
G Spocd1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) RGD PMID:32674113 MGI:6453929 NCBI chr 5:142,288,822...142,297,113 JBrowse link
G Tdrd9 tudor domain containing 9 acts_upstream_of_or_within ISO (MGI:5824447|PMID:27473657) RGD PMID:27473657 MGI:5824447 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651 		JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6434559|PMID:32381626), (MGI:6447460|PMID:32719317) RGD PMID:32381626 PMID:32719317 MGI:6434559 MGI:6447460 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467 		JBrowse link
G Tex19.2 testis expressed gene 19.2 involved_in ISO (PMID:28806172) RGD PMID:28806172 NCBI chr10:106,379,757...106,382,344
Ensembl chr10:106,379,757...106,382,344 		JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (MGI:5912961|PMID:28806172) RGD PMID:28806172 MGI:5912961 NCBI chr 9:13,982,427...14,062,315
Ensembl chr 9:13,982,329...14,062,139 		JBrowse link
retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within
involved_in		 ISO
ISS
IEA		 MGI:2155766 (MGI:5694015|PMID:25503965)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:25503965 GO_REF:0000024 GO_REF:0000107 MGI:5694015 NCBI chr20:10,614,933...10,629,337
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 acts_upstream_of_or_within ISO (MGI:5319753|PMID:22020280) RGD PMID:22020280 MGI:5319753 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 acts_upstream_of_positive_effect
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:3712153 (MGI:5319753|PMID:22020280), (MGI:5694015|PMID:25503965)		 UniProt
RGD		 PMID:22020280 PMID:25503965 GO_REF:0000024 MGI:5319753 MGI:5694015 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761 		JBrowse link
G Smyd5 SMYD family member 5 involved_in ISO (PMID:28951459)
(MGI:6103640|PMID:28951459)		 RGD PMID:28951459 MGI:6103640 NCBI chr 4:117,969,615...117,984,082
Ensembl chr 4:117,969,626...117,984,347 		JBrowse link
retrotransposon silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:3815367|PMID:18922463) RGD PMID:18922463 MGI:3815367 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISO (MGI:3815367|PMID:18922463) RGD PMID:18922463 MGI:3815367 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761 		JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169 		JBrowse link
siRNA-mediated retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx4 DEAD-box helicase 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4443217|PMID:20439430)		 UniProt
RGD		 PMID:20439430 GO_REF:0000024 MGI:4443217 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5439219|PMID:22902560)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:22902560 GO_REF:0000024 GO_REF:0000107 MGI:5439219 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in ISO (MGI:4417983|PMID:20011505) RGD PMID:20011505 MGI:4417983 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657 		JBrowse link
G Mov10l1 Mov10 like RNA helicase 1 involved_in ISO (MGI:4457283|PMID:20534472) RGD PMID:20534472 MGI:4457283 NCBI chr 7:120,070,171...120,135,406
Ensembl chr 7:120,070,135...120,134,765 		JBrowse link
G Mybl1 MYB proto-oncogene like 1 acts_upstream_of_or_within ISO (MGI:5495879|PMID:23523368) RGD PMID:23523368 MGI:5495879 NCBI chr 5:9,582,905...9,618,179
Ensembl chr 5:9,582,934...9,618,183 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:3778312|PMID:18381894) RGD PMID:18381894 MGI:3778312 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3778312|PMID:18381894)		 UniProt
RGD		 PMID:18381894 GO_REF:0000024 MGI:3778312 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in ISO (MGI:4356231|PMID:19465913) RGD PMID:19465913 MGI:4356231 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) RGD PMID:24067652 MGI:5516419 NCBI chr 1:88,133,271...88,205,729
Ensembl chr 1:88,133,373...88,205,705 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:4946318|PMID:21383078)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 MGI:4946318 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4418580|PMID:20059948)		 UniProt
RGD		 PMID:20059948 GO_REF:0000024 MGI:4418580 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651 		JBrowse link
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Term Annotations click to browse term
  biological_process 19574
    cellular process 18252
      transposition 49
        retrotransposition 48
          retrotransposon silencing + 28
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