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ONTOLOGY REPORT - ANNOTATIONS

Term:transposition
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Accession:GO:0032196 term browser browse the term
Definition:Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites. For elements that are transcribed as the first step of transposition, the process starts with the transcription of the transposable element, its translation and maturation, and ending with integration into DNA. For elements that are cut out, the process starts with the excision of the donor DNA and integrated into another site.
Synonyms:xref: Wikipedia:Transposon


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DNA transposition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THAP9 THAP domain containing 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:6,852,057...6,875,660
Ensembl chr32:6,852,116...6,870,696 		JBrowse link
non-replicative DNA transposition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PGBD5 piggyBac transposable element derived 5 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 4:8,989,542...9,025,836
Ensembl chr 4:8,989,430...9,046,954 		JBrowse link
piRNA-mediated retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX4 DEAD-box helicase 4 acts_upstream_of_positive_effect ISO (MGI:5908740|PMID:28633017) UniProt PMID:28633017 MGI:5908740 NCBI chr 2:43,026,367...43,109,546
Ensembl chr 2:43,027,296...43,109,526 		JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:1,760,544...1,791,204
Ensembl chr26:1,761,149...1,791,185 		JBrowse link
G PIWIL2 piwi like RNA-mediated gene silencing 2 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (MGI:5501381|PMID:23706823) Ensembl
UniProt		 PMID:23706823 GO_REF:0000107 MGI:5501381 NCBI chr25:34,911,120...34,987,287
Ensembl chr25:34,912,358...34,987,339 		JBrowse link
G SPOCD1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) UniProt PMID:32674113 MGI:6453929 NCBI chr 2:69,254,343...69,326,588
Ensembl chr 2:69,289,328...69,326,595 		JBrowse link
G TDRD9 tudor domain containing 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:71,610,653...71,717,772
Ensembl chr 8:71,610,711...71,717,199 		JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6447460|PMID:32719317) UniProt PMID:32719317 MGI:6447460 NCBI chr16:33,423,546...33,517,458
Ensembl chr16:33,423,876...33,515,452 		JBrowse link
retrotransposition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G L1TD1 LINE1 type transposase domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:47,872,560...47,878,222
Ensembl chr 5:47,873,003...47,878,207 		JBrowse link
G MORC1 MORC family CW-type zinc finger 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:25503965) Ensembl
MGI		 PMID:25503965 GO_REF:0000107 NCBI chr33:14,120,370...14,302,995
Ensembl chr33:14,147,504...14,291,024 		JBrowse link
G TREX1 three prime repair exonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28835460) Ensembl
MGI		 PMID:28835460 GO_REF:0000107 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906 		JBrowse link
retrotransposon silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOBEC3Z1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3Z1 involved_in ISO (PMID:16527742), (PMID:21123384) UniProt PMID:16527742 PMID:21123384
G APOBEC3Z3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3Z3 involved_in ISO (PMID:18827027)
(PMID:18779051)
(MGI:5285175|PMID:16527742)		 UniProt PMID:16527742 PMID:18779051 PMID:18827027 MGI:5285175 NCBI chr10:25,910,973...25,917,508
Ensembl chr10:25,911,291...25,913,808 		JBrowse link
G ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:56,197,784...56,250,067
Ensembl chr14:56,197,875...56,250,073 		JBrowse link
G BTBD18 BTB domain containing 18 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (MGI:5882241|PMID:28292424) Ensembl
UniProt		 PMID:28292424 GO_REF:0000107 MGI:5882241 NCBI chr18:38,470,643...38,478,512
Ensembl chr18:38,471,214...38,478,068 		JBrowse link
G MOV10 Mov10 RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:62,872,607...62,896,208
Ensembl chr17:62,872,756...62,896,395 		JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (MGI:6214653|PMID:25247314)
(MGI:6303534|PMID:30853213)		 UniProt PMID:25247314 PMID:30853213 MGI:6214653 MGI:6303534 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944 		JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:377,141...383,355
Ensembl chr 9:376,445...442,919 		JBrowse link
G TDRD9 tudor domain containing 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27473657) Ensembl
MGI		 PMID:27473657 GO_REF:0000107 NCBI chr 8:71,610,653...71,717,772
Ensembl chr 8:71,610,711...71,717,199 		JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6434559|PMID:32381626) UniProt PMID:32381626 MGI:6434559 NCBI chr16:33,423,546...33,517,458
Ensembl chr16:33,423,876...33,515,452 		JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:11,167,286...11,296,817
Ensembl chr12:11,167,346...11,294,911 		JBrowse link
retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (PMID:27856912) MGI PMID:27856912 NCBI chr24:22,096,386...22,123,378
Ensembl chr24:22,096,349...22,122,900 		JBrowse link
G DNMT3L DNA methyltransferase 3 like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25503965) Ensembl
MGI		 PMID:25503965 GO_REF:0000107 NCBI chr31:38,099,100...38,111,432 JBrowse link
G MORC1 MORC family CW-type zinc finger 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25503965) Ensembl
MGI		 PMID:25503965 GO_REF:0000107 NCBI chr33:14,120,370...14,302,995
Ensembl chr33:14,147,504...14,291,024 		JBrowse link
G PIWIL2 piwi like RNA-mediated gene silencing 2 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (MGI:5319753|PMID:22020280) Ensembl
UniProt		 PMID:22020280 GO_REF:0000107 MGI:5319753 NCBI chr25:34,911,120...34,987,287
Ensembl chr25:34,912,358...34,987,339 		JBrowse link
G PIWIL4 piwi like RNA-mediated gene silencing 4 acts_upstream_of_positive_effect
acts_upstream_of_or_within		 ISO (MGI:5319753|PMID:22020280)
(PMID:25503965)		 UniProt
MGI		 PMID:22020280 PMID:25503965 MGI:5319753 NCBI chr21:6,319,986...6,391,149
Ensembl chr21:6,319,987...6,366,787 		JBrowse link
G SMYD5 SMYD family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:49,638,436...49,650,231
Ensembl chr17:49,639,765...49,650,182 		JBrowse link
retrotransposon silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MOV10 Mov10 RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:62,872,607...62,896,208
Ensembl chr17:62,872,756...62,896,395 		JBrowse link
G PIWIL2 piwi like RNA-mediated gene silencing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:34,911,120...34,987,287
Ensembl chr25:34,912,358...34,987,339 		JBrowse link
G PIWIL4 piwi like RNA-mediated gene silencing 4 involved_in ISO (MGI:3815367|PMID:18922463) UniProt PMID:18922463 MGI:3815367 NCBI chr21:6,319,986...6,391,149
Ensembl chr21:6,319,987...6,366,787 		JBrowse link
G TUT4 terminal uridylyl transferase 4 involved_in ISO (PMID:30122351) UniProt PMID:30122351 NCBI chr15:8,832,208...8,958,136
Ensembl chr15:8,832,199...9,047,152 		JBrowse link
G TUT7 terminal uridylyl transferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:73,400,648...73,464,935
Ensembl chr 1:73,401,421...73,475,493 		JBrowse link
siRNA-mediated retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX4 DEAD-box helicase 4 involved_in ISO (MGI:4443217|PMID:20439430) UniProt PMID:20439430 MGI:4443217 NCBI chr 2:43,026,367...43,109,546
Ensembl chr 2:43,027,296...43,109,526 		JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:6,836,043...6,868,268
Ensembl chr 6:6,836,086...6,868,818 		JBrowse link
G MAEL maelstrom spermatogenic transposon silencer involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,364,111...31,394,675
Ensembl chr 7:31,364,293...31,409,435 		JBrowse link
G MOV10L1 Mov10 like RNA helicase 1 involved_in ISO (MGI:4457283|PMID:20534472) UniProt PMID:20534472 MGI:4457283 NCBI chr10:17,067,273...17,139,910
Ensembl chr10:17,067,273...17,240,197 		JBrowse link
G MYBL1 MYB proto-oncogene like 1 acts_upstream_of_positive_effect ISO (MGI:5495879|PMID:23523368) UniProt PMID:23523368 MGI:5495879 NCBI chr29:16,155,867...16,192,814
Ensembl chr29:16,157,821...16,192,808 		JBrowse link
G PIWIL2 piwi like RNA-mediated gene silencing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:34,911,120...34,987,287
Ensembl chr25:34,912,358...34,987,339 		JBrowse link
G PIWIL4 piwi like RNA-mediated gene silencing 4 involved_in ISO (MGI:3778312|PMID:18381894) UniProt PMID:18381894 MGI:3778312 NCBI chr21:6,319,986...6,391,149
Ensembl chr21:6,319,987...6,366,787 		JBrowse link
G TDRD1 tudor domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:25,028,195...25,081,300
Ensembl chr28:25,028,317...25,081,170 		JBrowse link
G TDRD12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) UniProt PMID:24067652 MGI:5516419 NCBI chr 1:119,229,721...119,290,101
Ensembl chr 1:119,231,485...119,290,086 		JBrowse link
G TDRD5 tudor domain containing 5 involved_in ISS UniProt GO_REF:0000024 NCBI chr 7:20,259,940...20,348,014
Ensembl chr 7:20,261,630...20,348,650 		JBrowse link
G TDRD9 tudor domain containing 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:71,610,653...71,717,772
Ensembl chr 8:71,610,711...71,717,199 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    cellular process 16920
      transposition 32
        DNA transposition + 2
        retrotransposition + 30
paths to the root