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ONTOLOGY REPORT - ANNOTATIONS


Term:transposition
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Accession:GO:0032196 term browser browse the term
Definition:Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites. For elements that are transcribed as the first step of transposition, the process starts with the transcription of the transposable element, its translation and maturation, and ending with integration into DNA. For elements that are cut out, the process starts with the excision of the donor DNA and integrated into another site.
Synonyms:xref: Wikipedia:Transposon



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transposition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255
JBrowse link
negative regulation of transposition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in ISO
ISS
IBA
(PMID:18779051), (PMID:18827027), (PMID:20062055)
(MGI:5285175|PMID:16527742)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:16527742 PMID:18779051 PMID:18827027 PMID:20062055 PMID:21873635 GO_REF:0000024 MGI:5285175, RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922
JBrowse link
G Btbd18 BTB domain containing 18 involved_in IBA
ISO
PMID:21873635
(MGI:5882241|PMID:28292424)
RGD PMID:28292424 PMID:21873635 MGI:5882241, RGD:13792537 NCBI chr 3:69,743,057...69,751,096
Ensembl chr 3:69,745,012...69,751,042
JBrowse link
G Ddx4 DEAD-box helicase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5908740|PMID:28633017)
UniProt
RGD
PMID:28633017 GO_REF:0000024 MGI:5908740 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723
JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within ISO MGI:2155766 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516
JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255
JBrowse link
G Mybl1 MYB proto-oncogene like 1 involved_in ISO (MGI:5495879|PMID:23523368) RGD PMID:23523368 MGI:5495879 NCBI chr 5:9,582,905...9,618,179
Ensembl chr 5:9,582,934...9,618,183
JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5316869|PMID:22121019) RGD PMID:22121019 MGI:5316869 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:5319753|PMID:22020280), (MGI:5501381|PMID:23706823) RGD PMID:22020280 PMID:23706823 MGI:5319753 MGI:5501381 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:5319753|PMID:22020280)
MGI:3712153 (MGI:5694015|PMID:25503965)
UniProt
RGD
PMID:22020280 PMID:25503965 GO_REF:0000024 MGI:5319753 MGI:5694015 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6214653|PMID:25247314), (MGI:6303534|PMID:30853213) RGD PMID:25247314 PMID:30853213 MGI:6214653 MGI:6303534 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:6377981|PMID:31226208)
UniProt
RGD
PMID:31226208 GO_REF:0000024 MGI:6377981 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Smyd5 SMYD family member 5 involved_in ISO (PMID:28951459)
(MGI:6103640|PMID:28951459)
RGD PMID:28951459 MGI:6103640 NCBI chr 4:117,969,615...117,984,082
Ensembl chr 4:117,969,626...117,984,347
JBrowse link
G Spocd1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) RGD PMID:32674113 MGI:6453929 NCBI chr 5:142,288,822...142,297,113 JBrowse link
G Tdrd9 tudor domain containing 9 involved_in
acts_upstream_of_or_within
IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(MGI:5824447|PMID:27473657)
(MGI:5908740|PMID:28633017)
UniProt
RGD
PMID:27473657 PMID:28633017 PMID:21873635 GO_REF:0000024 MGI:5824447 MGI:5908740, RGD:13792537 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651
JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6434559|PMID:32381626), (MGI:6447460|PMID:32719317) RGD PMID:32381626 PMID:32719317 MGI:6434559 MGI:6447460 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467
JBrowse link
G Tex19.1 testis expressed 19.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,420,245...106,422,452
Ensembl chr10:106,420,139...106,422,425
JBrowse link
G Tex19.2 testis expressed gene 19.2 involved_in IBA
ISO
PMID:21873635
(PMID:28806172)
RGD PMID:28806172 PMID:21873635 RGD:13792537 NCBI chr10:106,379,757...106,382,344
Ensembl chr10:106,379,757...106,382,344
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (MGI:5912961|PMID:28806172) RGD PMID:28806172 MGI:5912961 NCBI chr 9:13,982,427...14,062,315
Ensembl chr 9:13,982,329...14,062,139
JBrowse link
negative regulation of transposition, RNA-mediated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:23093941), (PMID:30122351)
(MGI:6099622|PMID:28662698)
RGD PMID:23093941 PMID:28662698 PMID:30122351 MGI:6099622 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083
JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465
JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169
JBrowse link
non-replicative transposition, DNA-mediated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pgbd5 piggyBac transposable element derived 5 involved_in IBA
ISO
PMID:21873635
(PMID:26406119)
RGD PMID:26406119 PMID:21873635 RGD:13792537 NCBI chr19:52,336,751...52,401,906
Ensembl chr19:52,336,751...52,402,397
JBrowse link
transposition, RNA-mediated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07004232.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:18,937,773...18,938,846 JBrowse link
G AABR07008681.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:60,024,969...60,032,699 JBrowse link
G AABR07011733.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:86,949,188...86,950,375 JBrowse link
G AABR07013425.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:197,901,214...197,902,287 JBrowse link
G AABR07018132.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:62,422,113...62,423,186 JBrowse link
G AABR07018556.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:62,426,733...62,427,809 JBrowse link
G AABR07038567.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:68,611,722...68,612,081 JBrowse link
G AABR07064590.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:265,208...266,329 JBrowse link
G AABR07064622.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:45,848,219...45,849,292 JBrowse link
G AC132740.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:63,776,402...63,777,523 JBrowse link
G ENSRNOG00000063521 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:32,242,694...32,243,836 JBrowse link
G ENSRNOG00000069050 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:10,307,774...10,308,847 JBrowse link
G ENSRNOG00000069224 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:122,562,810...122,563,931 JBrowse link
G L1td1 LINE-1 type transposase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:113,379,808...113,386,088
Ensembl chr 5:113,379,870...113,385,730
JBrowse link
G LOC100364265 ribosomal protein L19-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:16,880,899...16,898,782
Ensembl chr 5:16,880,899...16,896,524
JBrowse link
G LOC120098890 uncharacterized LOC120098890 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:41,909,767...41,932,712
Ensembl chr20:41,909,761...41,932,712
JBrowse link
G LOC498826 LRRGT00165 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:12,194,767...12,207,125
Ensembl chr18:12,194,767...12,207,125
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:6103025|PMID:28835460) RGD PMID:28835460 MGI:6103025 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20026
    cellular process 18613
      transposition 41
        MITE transposition 0
        negative regulation of transposition + 22
        positive regulation of transposition + 0
        regulation of transposition + 22
        transposition, DNA-mediated + 1
        transposition, RNA-mediated + 21
        transposon integration + 0
paths to the root