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ONTOLOGY REPORT - ANNOTATIONS


Term:transposition
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Accession:GO:0032196 term browser browse the term
Definition:Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites.
Synonyms:xref: Wikipedia:Transposon



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negative regulation of transposition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in ISO
ISS
IBA
(PMID:18779051), (PMID:18827027), (PMID:20062055)
(MGI:5285175|PMID:16527742)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:16527742 PMID:18779051 PMID:18827027 PMID:20062055 PMID:21873635 GO_REF:0000024 MGI:5285175, RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922
JBrowse link
G Btbd18 BTB domain containing 18 involved_in IBA
ISO
PMID:21873635
(MGI:5882241|PMID:28292424)
RGD PMID:28292424 PMID:21873635 MGI:5882241, RGD:13792537 NCBI chr 3:69,743,057...69,751,096
Ensembl chr 3:69,745,012...69,751,042
JBrowse link
G Ddx4 DEAD-box helicase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5908740|PMID:28633017)
UniProt
RGD
PMID:28633017 GO_REF:0000024 MGI:5908740 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723
JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2155766 (MGI:5694015|PMID:25503965)
Ensembl
RGD
PMID:25503965 GO_REF:0000107 MGI:5694015 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516
JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255
JBrowse link
G Mybl1 MYB proto-oncogene like 1 involved_in ISO (MGI:5495879|PMID:23523368) RGD PMID:23523368 MGI:5495879 NCBI chr 5:9,582,905...9,618,179
Ensembl chr 5:9,582,934...9,618,183
JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5316869|PMID:22121019) RGD PMID:22121019 MGI:5316869 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:5319753|PMID:22020280), (MGI:5501381|PMID:23706823) RGD PMID:22020280 PMID:23706823 MGI:5319753 MGI:5501381 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:5319753|PMID:22020280)
MGI:3712153 (MGI:5694015|PMID:25503965)
UniProt
RGD
PMID:22020280 PMID:25503965 GO_REF:0000024 MGI:5319753 MGI:5694015 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761
JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:6377981|PMID:31226208)
UniProt
RGD
PMID:31226208 GO_REF:0000024 MGI:6377981 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Smyd5 SMYD family member 5 involved_in ISO (PMID:28951459)
(MGI:6103640|PMID:28951459)
RGD PMID:28951459 MGI:6103640 NCBI chr 4:117,969,615...117,984,082
Ensembl chr 4:117,969,626...117,984,347
JBrowse link
G Spocd1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) RGD PMID:32674113 MGI:6453929 NCBI chr 5:142,288,822...142,297,113 JBrowse link
G Tdrd9 tudor domain containing 9 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(MGI:5824447|PMID:27473657)
(MGI:5908740|PMID:28633017)
GO_REF:0000024
RGD
UniProt
PMID:27473657 PMID:28633017 PMID:21873635 GO_REF:0000024 MGI:5824447 MGI:5908740, RGD:13792537 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651
JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6434559|PMID:32381626), (MGI:6447460|PMID:32719317) RGD PMID:32381626 PMID:32719317 MGI:6434559 MGI:6447460 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467
JBrowse link
G Tex19.1 testis expressed 19.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,420,245...106,422,452
Ensembl chr10:106,420,139...106,422,425
JBrowse link
G Tex19.2 testis expressed gene 19.2 involved_in IBA
ISO
PMID:21873635
(PMID:28806172)
RGD PMID:28806172 PMID:21873635 RGD:13792537 NCBI chr10:106,379,757...106,382,344
Ensembl chr10:106,379,757...106,382,344
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (MGI:5912961|PMID:28806172) RGD PMID:28806172 MGI:5912961 NCBI chr 9:13,982,427...14,062,315
Ensembl chr 9:13,982,329...14,062,139
JBrowse link
negative regulation of transposition, RNA-mediated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:23093941), (PMID:30122351)
(MGI:6099622|PMID:28662698)
RGD PMID:23093941 PMID:28662698 PMID:30122351 MGI:6099622 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083
JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465
JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169
JBrowse link
non-replicative transposition, DNA-mediated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pgbd5 piggyBac transposable element derived 5 involved_in IBA
ISO
PMID:21873635
(PMID:26406119)
RGD PMID:26406119 PMID:21873635 RGD:13792537 NCBI chr19:52,336,751...52,401,906
Ensembl chr19:52,336,751...52,402,397
JBrowse link
transposition, DNA-mediated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC107597.2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G AC115371.2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G AC142178.3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
transposition, RNA-mediated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07004232.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:18,937,773...18,938,846 JBrowse link
G AABR07007544.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07008293.3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07008681.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:60,024,969...60,032,699 JBrowse link
G AABR07011700.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07011733.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:86,949,188...86,950,375 JBrowse link
G AABR07013425.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:197,901,214...197,902,287 JBrowse link
G AABR07018132.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:62,422,113...62,423,186 JBrowse link
G AABR07018556.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:62,426,733...62,427,809 JBrowse link
G AABR07037395.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07038567.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:68,611,722...68,612,081 JBrowse link
G AABR07039694.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07040936.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07042361.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07043347.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:3,606,222...3,607,319 JBrowse link
G AABR07045337.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr20:41,909,761...41,932,712 JBrowse link
G AABR07053613.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07057961.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07061801.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07064590.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:265,208...266,329 JBrowse link
G AABR07064622.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:45,848,219...45,849,292 JBrowse link
G AABR07067082.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07070416.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC102976.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC112624.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC123427.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC127076.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC132740.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:63,776,402...63,777,523 JBrowse link
G L1td1 LINE-1 type transposase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:113,379,808...113,386,088
Ensembl chr 5:113,379,870...113,385,730
JBrowse link
G LOC100364265 ribosomal protein L19-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:16,880,899...16,898,782
Ensembl chr 5:16,880,899...16,896,524
JBrowse link
G LOC317588 hypothetical protein LOC317588 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC498826 LRRGT00165 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:12,194,767...12,207,125
Ensembl chr18:12,194,767...12,207,125
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:6103025|PMID:28835460) RGD PMID:28835460 MGI:6103025 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    cellular process 18359
      transposition 58
        MITE transposition 0
        negative regulation of transposition + 21
        positive regulation of transposition + 0
        regulation of transposition + 21
        transposition, DNA-mediated + 4
        transposition, RNA-mediated + 36
        transposon integration + 0
paths to the root