Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:small-subunit processome
go back to main search page
Accession:GO:0032040 term browser browse the term
Definition:A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
Synonyms:exact_synonym: SSU processome


show annotations for term's descendants           Sort by:
small-subunit processome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AATF apoptosis antagonizing transcription factor part_of IEA Ensembl GO_REF:0000107 NCBI chr12:38,461,809...38,563,537
Ensembl chr12:38,461,830...38,564,306 		JBrowse link
G BMS1 BMS1 ribosome biogenesis factor part_of IEA Ensembl GO_REF:0000107 NCBI chr14:61,056,075...61,125,984
Ensembl chr14:61,087,670...61,125,980 		JBrowse link
G C14H1orf131 chromosome 14 C1orf131 homolog part_of IEA Ensembl GO_REF:0000107 NCBI chr14:59,240,343...59,257,168
Ensembl chr14:59,240,514...59,258,838 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 part_of IBA GO_Central GO_REF:0000033 NCBI chr 4:33,672,867...33,704,888
Ensembl chr 4:33,672,869...33,704,573 		JBrowse link
G DHX37 DEAH-box helicase 37 part_of IEA Ensembl GO_REF:0000107 NCBI chr14:28,206,152...28,242,436
Ensembl chr14:28,211,579...28,242,435 		JBrowse link
G DIMT1 DIM1 rRNA methyltransferase and ribosome maturation factor part_of IEA Ensembl GO_REF:0000107 NCBI chr16:41,098,146...41,111,203
Ensembl chr16:41,098,350...41,111,229 		JBrowse link
G DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:123,394,771...123,408,460
Ensembl chr 4:123,394,740...123,414,511 		JBrowse link
G EMG1 EMG1 N1-specific pseudouridine methyltransferase part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:63,746,326...63,751,469
Ensembl chr 5:63,745,476...63,751,469 		JBrowse link
G EXOSC10 exosome component 10 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:71,258,988...71,282,802
Ensembl chr 6:71,258,999...71,282,433 		JBrowse link
G FBL fibrillarin part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:48,314,782...48,326,433
Ensembl chr 6:48,314,783...48,326,436 		JBrowse link
G FCF1 FCF1 rRNA-processing protein part_of IEA InterPro GO_REF:0000002 NCBI chr 7:97,940,919...97,961,268
Ensembl chr 7:97,940,954...97,958,624 		JBrowse link
G HEATR1 HEAT repeat containing 1 part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:54,821,073...54,870,873
Ensembl chr14:54,821,171...54,869,857 		JBrowse link
G IMP3 IMP U3 small nucleolar ribonucleoprotein 3 part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:58,023,368...58,024,496
Ensembl chr 7:58,023,368...58,024,496 		JBrowse link
G IMP4 IMP U3 small nucleolar ribonucleoprotein 4 part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:31,970,179...31,975,158
Ensembl chr15:31,970,188...31,974,990 		JBrowse link
G KRR1 KRR1 small subunit processome component homolog part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:38,809,748...38,821,782
Ensembl chr 5:38,809,854...38,821,731 		JBrowse link
G LOC100155098 NHP2-like protein 1 pseudogene part_of IBA GO_Central GO_REF:0000033 NCBI chr  X:76,457,649...76,458,203 JBrowse link
G LOC100512568 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr16:55,351,616...55,354,642
Ensembl chr16:55,351,727...55,352,725 		JBrowse link
G LOC100621400 40S ribosomal protein S13-like part_of ISS UniProt GO_REF:0000024 NCBI chr13:117,303,329...117,303,850 JBrowse link
G MPHOSPH10 M-phase phosphoprotein 10 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:143,972,587...143,994,036
Ensembl chr 1:143,972,596...143,994,041 		JBrowse link
G NAT10 N-acetyltransferase 10 part_of IEA Ensembl GO_REF:0000107 NCBI chr 2:26,786,172...26,827,060
Ensembl chr 2:26,786,177...26,826,992 		JBrowse link
G NGDN neuroguidin part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 7:75,621,334...75,629,447 JBrowse link
G NOL10 nucleolar protein 10 part_of IBA GO_Central GO_REF:0000033 NCBI chr 3:125,861,422...125,956,626
Ensembl chr 3:125,861,432...125,956,887 		JBrowse link
G NOL6 nucleolar protein 6 part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr10:33,022,035...33,035,201
Ensembl chr10:33,022,035...33,035,200 		JBrowse link
G NOL7 nucleolar protein 7 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:9,969,483...9,978,117
Ensembl chr 7:9,971,209...9,983,827 		JBrowse link
G NOP14 NOP14 nucleolar protein part_of IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:1,717,019...1,737,971
Ensembl chr 8:1,716,826...1,737,902 		JBrowse link
G NOP56 NOP56 ribonucleoprotein part_of IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr17:32,960,099...32,965,396
Ensembl chr17:32,960,102...32,965,370 		JBrowse link
G NOP58 NOP58 ribonucleoprotein part_of IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr15:105,893,589...105,930,458
Ensembl chr15:105,893,637...105,930,459 		JBrowse link
G PDCD11 programmed cell death 11 part_of IBA GO_Central GO_REF:0000033 NCBI chr14:114,327,583...114,382,002
Ensembl chr14:114,327,625...114,379,179 		JBrowse link
G PNO1 partner of NOB1 homolog part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:74,071,621...74,084,896
Ensembl chr 3:74,068,828...74,084,789 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:79,687,375...79,850,146
Ensembl chr 4:79,687,375...79,846,656 		JBrowse link
G PWP2 PWP2 small subunit processome component part_of IEA Ensembl GO_REF:0000107 NCBI chr13:207,015,047...207,031,752
Ensembl chr13:207,015,125...207,031,879 		JBrowse link
G RCL1 RNA terminal phosphate cyclase like 1 part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 1:217,142,965...217,204,960
Ensembl chr 1:217,142,966...217,204,965 		JBrowse link
G RPS11 ribosomal protein S11 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:54,577,414...54,579,797
Ensembl chr 6:54,577,667...54,580,846 		JBrowse link
G RPS12 ribosomal protein S12 part_of ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:30,920,804...30,923,392
Ensembl chr 1:30,920,808...30,923,658 		JBrowse link
G RPS13 ribosomal protein S13 part_of ISS UniProt GO_REF:0000024 NCBI chr 2:42,030,585...42,033,382
Ensembl chr 2:42,030,248...42,033,378 		JBrowse link
G RPS14 ribosomal protein S14 part_of IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:151,430,047...151,433,951
Ensembl chr 2:151,430,049...151,433,856 		JBrowse link
G RPS15A ribosomal protein S15a part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 3:26,776,661...26,783,491
Ensembl chr 3:26,776,780...26,784,124 		JBrowse link
G RPS16 ribosomal protein S16 part_of ISS UniProt GO_REF:0000024 NCBI chr 6:48,085,684...48,088,368
Ensembl chr 6:48,085,678...48,088,423 		JBrowse link
G RPS17 ribosomal protein S17 part_of ISS UniProt GO_REF:0000024 NCBI chr 7:52,386,342...52,389,003
Ensembl chr 7:52,386,036...52,390,599 		JBrowse link
G RPS19 ribosomal protein S19 part_of ISS UniProt GO_REF:0000024 NCBI chr 6:50,003,198...50,010,135
Ensembl chr 6:50,000,948...50,010,341 		JBrowse link
G RPS19BP1 ribosomal protein S19 binding protein 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:8,735,363...8,738,808
Ensembl chr 5:8,735,382...8,738,799 		JBrowse link
G RPS23 ribosomal protein S23 part_of ISS UniProt GO_REF:0000024 NCBI chr 2:90,679,038...90,680,681
Ensembl chr 2:90,679,000...90,680,765 		JBrowse link
G RPS24 ribosomal protein S24 part_of IEA Ensembl GO_REF:0000107 NCBI chr14:80,473,867...80,480,818
Ensembl chr14:80,473,928...80,480,815 		JBrowse link
G RPS27 ribosomal protein S27 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:95,697,869...95,699,481
Ensembl chr 4:95,694,771...95,699,447 		JBrowse link
G RPS27A ribosomal protein S27a part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:85,989,609...85,992,257
Ensembl chr 3:85,986,501...85,992,503 		JBrowse link
G RPS28 ribosomal protein S28 part_of ISS UniProt GO_REF:0000024 NCBI chr 2:70,953,706...70,954,862
Ensembl chr 2:70,953,708...70,954,775 		JBrowse link
G RPS3A ribosomal protein S3A part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 8:77,889,616...77,893,740
Ensembl chr 8:77,889,607...78,023,346 		JBrowse link
G RPS4X ribosomal protein S4 X-linked part_of IEA Ensembl GO_REF:0000107 NCBI chr  X:58,149,302...58,155,179
Ensembl chr  X:58,149,318...58,155,157 		JBrowse link
G RPS5 ribosomal protein S5 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:62,967,955...62,974,353
Ensembl chr 6:62,967,994...62,974,350 		JBrowse link
G RPS6 ribosomal protein S6 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:203,444,360...203,447,643
Ensembl chr 1:203,444,450...203,451,468 		JBrowse link
G RPS7 ribosomal protein S7 part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:131,258,709...131,263,285
Ensembl chr 3:131,258,722...131,263,256 		JBrowse link
G RPS8 ribosomal protein S8 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:166,550,574...166,553,289
Ensembl chr 6:166,549,949...166,553,230 		JBrowse link
G RPS9 ribosomal protein S9 part_of ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:55,920,930...55,927,280
Ensembl chr 6:55,920,934...55,927,280 		JBrowse link
G RRP7A ribosomal RNA processing 7 homolog A part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:6,208,495...6,217,381
Ensembl chr 5:6,208,548...6,217,374 		JBrowse link
G RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:34,067,517...34,075,425
Ensembl chr13:34,067,520...34,075,430 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 part_of IBA GO_Central GO_REF:0000033 NCBI chr 5:6,891,014...6,900,026
Ensembl chr 5:6,885,067...6,900,022 		JBrowse link
G TBL3 transducin beta like 3 part_of IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:39,989,739...39,996,138
Ensembl chr 3:39,989,740...39,995,123 		JBrowse link
G TMEM169 transmembrane protein 169 part_of IEA Ensembl GO_REF:0000107 NCBI chr15:118,335,915...118,352,713
Ensembl chr15:118,346,943...118,352,707 		JBrowse link
G UTP11 UTP11 small subunit processome component part_of IEA
IBA		 UniProt
InterPro
Ensembl
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 6:93,993,686...94,006,889
Ensembl chr 6:93,993,593...94,006,898 		JBrowse link
G UTP14A UTP14A small subunit processome component part_of IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr  X:106,479,028...106,500,389 JBrowse link
G UTP15 UTP15 small subunit processome component part_of IEA Ensembl GO_REF:0000107 NCBI chr 2:82,715,411...82,733,042
Ensembl chr 2:82,715,416...82,734,113 		JBrowse link
G UTP18 UTP18 small subunit processome component part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:27,526,180...27,565,177
Ensembl chr12:27,526,175...27,565,169 		JBrowse link
G UTP20 UTP20 small subunit processome component part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:82,810,700...82,913,176
Ensembl chr 5:82,813,717...82,913,155 		JBrowse link
G UTP23 UTP23 small subunit processome component part_of IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:21,934,796...21,940,994
Ensembl chr 4:21,934,434...21,940,952 		JBrowse link
G UTP25 UTP25 small subunit processome component part_of IBA GO_Central GO_REF:0000033 NCBI chr 9:133,115,177...133,141,258
Ensembl chr 9:133,105,063...133,141,217 		JBrowse link
G UTP3 UTP3 small subunit processome component part_of IEA Ensembl GO_REF:0000107 NCBI chr 8:67,475,971...67,477,587
Ensembl chr 8:67,476,089...67,479,001 		JBrowse link
G UTP4 UTP4 small subunit processome component part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:17,784,908...17,818,417
Ensembl chr 6:17,778,556...17,818,132 		JBrowse link
G UTP6 UTP6 small subunit processome component part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:43,061,579...43,089,479
Ensembl chr12:43,032,915...43,089,205 		JBrowse link
G WDR3 WD repeat domain 3 part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:102,841,459...102,878,636
Ensembl chr 4:102,827,190...102,878,585 		JBrowse link
G WDR36 WD repeat domain 36 part_of IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:115,835,099...115,907,643
Ensembl chr 2:115,861,811...115,906,304 		JBrowse link
G WDR43 WD repeat domain 43 part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:110,317,549...110,365,108
Ensembl chr 3:110,318,538...110,365,062 		JBrowse link
G WDR46 WD repeat domain 46 part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:29,645,128...29,653,567
Ensembl chr 7:29,645,130...29,653,579 		JBrowse link
G WDR75 WD repeat domain 75 part_of IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr15:93,981,054...94,026,479
Ensembl chr15:93,981,215...94,026,707 		JBrowse link
G XRCC5 X-ray repair cross complementing 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr15:118,354,943...118,451,974
Ensembl chr15:118,354,796...118,451,960 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18389
    protein-containing complex 5557
      ribonucleoprotein complex 891
        preribosome 103
          small-subunit processome 74
paths to the root