ONTOLOGY REPORT - ANNOTATIONS
Term: small-subunit processome
Accession: GO:0032040
browse the term
Definition: A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
Synonyms: exact_synonym: SSU processome
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Aatf
apoptosis antagonizing transcription factor
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr10:69,299,029...69,392,207
Ensembl chr10:69,299,037...69,392,201
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Bms1
BMS1 ribosome biogenesis factor
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127
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C19h1orf131
similar to human chromosome 1 open reading frame 131
part_of
ISO ISS IEA
(PMID:34516797) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:34516797
GO_REF:0000024 GO_REF:0000107
NCBI chr19:52,807,932...52,822,259
Ensembl chr19:52,807,934...52,822,267
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Dcaf13
DDB1 and CUL4 associated factor 13
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:70,160,983...70,196,142
Ensembl chr 7:70,160,941...70,196,142
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Dhx37
DEAH-box helicase 37
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802
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Dimt1
DIM1 rRNA methyltransferase and ribosome maturation factor
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 2:38,343,086...38,368,242
Ensembl chr 2:38,354,854...38,368,227
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Dnttip2
deoxynucleotidyltransferase, terminal, interacting protein 2
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 2:210,374,321...210,386,366
Ensembl chr 2:210,374,289...210,385,581
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Emg1
EMG1 N1-specific pseudouridine methyltransferase
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540
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Exosc10
exosome component 10
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 5:158,995,313...159,018,940
Ensembl chr 5:158,995,313...159,018,940
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Fbl
fibrillarin
part_of
ISO ISS IEA IBA
(PMID:34516797) GO_REF:0000024 GO_REF:0000107 GO_REF:0000033
RGD UniProt Ensembl GO_Central
PMID:34516797
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932
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Fbll1
fibrillarin-like 1
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299
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Fcf1
Fcf1 rRNA-processing protein
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643
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Heatr1
HEAT repeat containing 1
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr17:58,053,288...58,093,895
Ensembl chr17:58,051,700...58,093,948
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Imp3
IMP U3 small nucleolar ribonucleoprotein 3
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 8:57,339,528...57,340,416
Ensembl chr 8:57,339,496...57,340,414
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Imp4
IMP U3 small nucleolar ribonucleoprotein 4
part_of
ISO ISS IBA
(PMID:34516797) GO_REF:0000024 GO_REF:0000033
RGD UniProt GO_Central
PMID:34516797
GO_REF:0000024 GO_REF:0000033
NCBI chr 9:36,654,127...36,659,265
Ensembl chr 9:36,654,401...36,660,075
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Krr1
KRR1, small subunit processome component homolog
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr 7:47,475,557...47,486,996
Ensembl chr 7:47,475,557...47,486,985
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LOC102551819
U3 small nucleolar RNA-associated protein 14 homolog B-like
part_of
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 9:80,120,622...80,129,166
Ensembl chr 9:80,115,077...80,129,504
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LOC120100003
40S ribosomal protein S12-like
part_of
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 1:220,574,554...220,577,707
Ensembl chr 1:220,577,097...220,577,495
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Mphosph10
M-phase phosphoprotein 10
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr 1:117,948,134...117,964,149
Ensembl chr 1:117,948,134...117,964,149
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Nat10
N-acetyltransferase 10
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 3:90,111,643...90,149,891
Ensembl chr 3:90,111,645...90,149,927
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Ngdn
neuroguidin
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr15:28,489,950...28,497,286
Ensembl chr15:28,490,040...28,519,654
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Noc4l
nucleolar complex associated 4 homolog
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:46,016,077...46,020,615
Ensembl chr12:46,016,069...46,020,614
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Nol10
nucleolar protein 10
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:40,144,217...40,225,353
Ensembl chr 6:40,144,235...40,225,353
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Nol6
nucleolar protein 6
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336
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Nol7
nucleolar protein 7
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr17:21,303,650...21,306,924
Ensembl chr17:21,302,624...21,307,431
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Nop14
NOP14 nucleolar protein
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr14:76,081,313...76,102,454
Ensembl chr14:76,080,793...76,102,453
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Nop56
NOP56 ribonucleoprotein
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr 3:117,476,963...117,481,847
Ensembl chr 3:117,477,053...117,481,841
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Nop58
NOP58 ribonucleoprotein
part_of
IEA ISO ISS IBA
GO_REF:0000002 (PMID:34516797) GO_REF:0000024 GO_REF:0000033
InterPro RGD UniProt GO_Central
PMID:34516797
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033
NCBI chr 9:61,120,939...61,144,810
Ensembl chr 9:61,120,929...61,144,810
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Pdcd11
programmed cell death 11
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:245,980,840...246,021,999
Ensembl chr 1:245,980,880...246,021,999
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Pno1
partner of NOB1 homolog
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr14:91,609,711...91,618,280
Ensembl chr14:91,609,233...91,618,324
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Prkdc
protein kinase, DNA-activated, catalytic subunit
part_of
ISO
(PMID:32103174)
RGD
PMID:32103174
NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
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Pwp2
PWP2, small subunit processome component
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640
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Rcl1
RNA terminal phosphate cyclase-like 1
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315
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Rps11
ribosomal protein S11
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 1:95,605,690...95,607,798
Ensembl chr 1:95,605,692...95,607,874
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Rps12
ribosomal protein S12
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 1:21,680,854...21,683,010
Ensembl chr 1:21,680,852...21,683,014
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Rps12l1
ribosomal protein S12 like 1
part_of
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr19:34,343,930...34,344,569
Ensembl chr19:34,343,929...34,344,569
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Rps12l12
ribosomal protein S12-like 12
part_of
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 3:117,490,998...117,491,509
Ensembl chr 3:117,491,079...117,491,477
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Rps12l2
ribosomal protein S12-like 2
part_of
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 1:252,597,641...252,598,162
Ensembl chr 1:252,597,664...252,598,155
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Rps12l7
ribosomal protein S12-like 7
part_of
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 5:56,967,192...56,987,008
Ensembl chr 5:56,967,236...56,967,634
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Rps12l9
ribosomal protein S12 like 9
part_of
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 1:76,616,556...76,617,067
Ensembl chr 1:76,616,570...76,617,079
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Rps13
ribosomal protein S13
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 1:170,572,925...170,575,355
Ensembl chr 1:170,572,921...170,575,355 Ensembl chr 3:170,572,921...170,575,355
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Rps14
ribosomal protein S14
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166
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Rps15a
ribosomal protein S15a
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 1:172,420,151...172,427,021
Ensembl chr 1:172,419,761...172,426,995
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Rps16
ribosomal protein S16
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
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Rps17
ribosomal protein S17
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 1:135,295,920...135,298,506
Ensembl chr 1:135,295,919...135,298,535 Ensembl chr 8:135,295,919...135,298,535
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Rps19
ribosomal protein S19
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
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Rps19bp1
ribosomal protein S19 binding protein 1
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 7:111,809,354...111,812,741
Ensembl chr 7:111,809,355...111,812,757
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Rps23
ribosomal protein S23
part_of
ISO ISS IEA
(PMID:34516797) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:34516797
GO_REF:0000024 GO_REF:0000107
NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918
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Rps24
ribosomal protein S24
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr16:89,538...94,267
Ensembl chr16:89,604...94,279
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Rps27
ribosomal protein S27
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 2:175,665,858...175,666,963
Ensembl chr 2:175,665,853...175,666,964
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Rps27a
ribosomal protein S27a
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr14:103,285,734...103,288,011
Ensembl chr14:103,285,734...103,288,011 Ensembl chr 5:103,285,734...103,288,011
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Rps28
ribosomal protein S28
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170 Ensembl chr16:14,607,801...14,609,170
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Rps3a
ribosomal protein S3a
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 2:171,524,685...171,529,054
Ensembl chr 2:171,524,500...171,529,055
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Rps4x
ribosomal protein S4, X-linked
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr X:67,298,522...67,302,965
Ensembl chr X:67,298,525...67,303,019 Ensembl chr 4:67,298,525...67,303,019
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Rps5
ribosomal protein S5
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 1:73,538,776...73,543,073
Ensembl chr 1:73,538,776...73,543,073
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Rps6
ribosomal protein S6
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 5:101,371,716...101,374,576
Ensembl chr 5:101,371,136...101,374,602 Ensembl chr 5:101,371,136...101,374,602
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Rps7
ribosomal protein S7
part_of
ISO ISS IBA
(PMID:34516797) GO_REF:0000024 GO_REF:0000033
RGD UniProt GO_Central
PMID:34516797
GO_REF:0000024 GO_REF:0000033
NCBI chr 6:45,266,200...45,271,064
Ensembl chr 6:45,223,980...45,271,145
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Rps8
ribosomal protein S8
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 5:130,630,362...130,632,932
Ensembl chr 5:130,629,716...130,633,268
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Rps9
ribosomal protein S9
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 1:65,511,723...65,515,076
Ensembl chr 1:65,511,723...65,515,123
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Rrp7a
ribosomal RNA processing 7 homolog A
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817
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Rrp9
ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr 8:107,116,411...107,126,123
Ensembl chr 8:107,117,471...107,126,123
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Snu13
small nuclear ribonucleoprotein 13
part_of
ISO ISS IBA
(PMID:34516797) GO_REF:0000024 GO_REF:0000033
RGD UniProt GO_Central
PMID:34516797
GO_REF:0000024 GO_REF:0000033
NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872 Ensembl chr 1:113,565,295...113,570,872
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Snu13l1
small nuclear ribonucleoprotein 13 like 1
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:150,624,087...150,624,525
Ensembl chr X:150,624,087...150,624,473
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Tbl3
transducin (beta)-like 3
part_of
IEA ISO ISS
GO_REF:0000002 (PMID:34516797) GO_REF:0000024
InterPro RGD UniProt
PMID:34516797
GO_REF:0000002 GO_REF:0000024
NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372
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Utp11
UTP11, small subunit processome component
part_of
IEA ISO ISS IBA
GO_REF:0000104 (PMID:34516797) GO_REF:0000024 GO_REF:0000033
UniProt RGD GO_Central
PMID:34516797
GO_REF:0000024 GO_REF:0000033 GO_REF:0000104
NCBI chr 5:136,931,279...136,946,164
Ensembl chr 5:136,931,008...136,946,191
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Utp14a
UTP14A small subunit processome component
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:127,439,282...127,464,634
Ensembl chr X:127,439,268...127,464,633
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Utp15
UTP15, small subunit processome component
part_of
ISO ISS
(PMID:34516797) GO_REF:0000024
RGD UniProt
PMID:34516797
GO_REF:0000024
NCBI chr 2:29,594,405...29,612,819
Ensembl chr 2:29,594,941...29,612,773
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Utp18
UTP18 small subunit processome component
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr10:78,811,879...78,839,338
Ensembl chr10:78,811,880...78,839,627
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Utp20
UTP20 small subunit processome component
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr 7:23,134,630...23,215,639
Ensembl chr 7:23,134,637...23,215,632
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Utp23
UTP23, small subunit processome component
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:83,185,187...83,196,652
Ensembl chr 7:83,189,656...83,196,655
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Utp25
UTP25 small subunit processome component
part_of
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr13:104,630,390...104,651,681
Ensembl chr13:104,630,391...104,651,662
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Utp3
UTP3, small subunit processome component
part_of
ISO ISS IBA
(PMID:34516797) GO_REF:0000024 GO_REF:0000033
RGD UniProt GO_Central
PMID:34516797
GO_REF:0000024 GO_REF:0000033
NCBI chr14:19,515,716...19,517,370
Ensembl chr14:19,515,669...19,517,396
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Utp4
UTP4 small subunit processome component
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550
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Utp6
UTP6 small subunit processome component
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr10:64,897,321...64,927,997
Ensembl chr10:64,897,328...64,927,997
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Wdr3
WD repeat domain 3
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr 2:187,505,816...187,528,432
Ensembl chr 2:187,505,816...187,528,432
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Wdr36
WD repeat domain 36
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr18:24,473,657...24,501,773
Ensembl chr18:24,473,663...24,508,092
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Wdr43
WD repeat domain 43
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846
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Wdr46
WD repeat domain 46
part_of
ISO IBA
(PMID:34516797) GO_REF:0000033
RGD GO_Central
PMID:34516797
GO_REF:0000033
NCBI chr20:4,937,845...4,945,796
Ensembl chr20:4,937,847...4,946,535
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Wdr75
WD repeat domain 75
part_of
ISO
(PMID:34516797)
RGD
PMID:34516797
NCBI chr 9:47,903,214...47,933,399
Ensembl chr 9:47,903,200...47,933,399
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Xrcc5
X-ray repair cross complementing 5
part_of
ISO
(PMID:32103174)
RGD
PMID:32103174
NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018
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