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ONTOLOGY REPORT - ANNOTATIONS


Term:small-subunit processome
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Accession:GO:0032040 term browser browse the term
Definition:A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
Synonyms:exact_synonym: SSU processome



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small-subunit processome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr10:69,299,029...69,392,207
Ensembl chr10:69,299,037...69,392,201
JBrowse link
G Bms1 BMS1 ribosome biogenesis factor part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127
JBrowse link
G C19h1orf131 similar to human chromosome 1 open reading frame 131 part_of ISO
ISS
IEA
(PMID:34516797)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:34516797 GO_REF:0000024 GO_REF:0000107 NCBI chr19:52,807,932...52,822,259
Ensembl chr19:52,807,934...52,822,267
JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:70,160,983...70,196,142
Ensembl chr 7:70,160,941...70,196,142
JBrowse link
G Dhx37 DEAH-box helicase 37 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802
JBrowse link
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 2:38,343,086...38,368,242
Ensembl chr 2:38,354,854...38,368,227
JBrowse link
G Dnttip2 deoxynucleotidyltransferase, terminal, interacting protein 2 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 2:210,374,321...210,386,366
Ensembl chr 2:210,374,289...210,385,581
JBrowse link
G Emg1 EMG1 N1-specific pseudouridine methyltransferase part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540
JBrowse link
G Exosc10 exosome component 10 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 5:158,995,313...159,018,940
Ensembl chr 5:158,995,313...159,018,940
JBrowse link
G Fbl fibrillarin part_of ISO
ISS
IEA
IBA
(PMID:34516797)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
RGD
UniProt
Ensembl
GO_Central
PMID:34516797 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932
JBrowse link
G Fbll1 fibrillarin-like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299
JBrowse link
G Fcf1 Fcf1 rRNA-processing protein part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643
JBrowse link
G Heatr1 HEAT repeat containing 1 part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr17:58,053,288...58,093,895
Ensembl chr17:58,051,700...58,093,948
JBrowse link
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 8:57,339,528...57,340,416
Ensembl chr 8:57,339,496...57,340,414
JBrowse link
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 part_of ISO
ISS
IBA
(PMID:34516797)
GO_REF:0000024
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:34516797 GO_REF:0000024 GO_REF:0000033 NCBI chr 9:36,654,127...36,659,265
Ensembl chr 9:36,654,401...36,660,075
JBrowse link
G Krr1 KRR1, small subunit processome component homolog part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr 7:47,475,557...47,486,996
Ensembl chr 7:47,475,557...47,486,985
JBrowse link
G LOC102551819 U3 small nucleolar RNA-associated protein 14 homolog B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:80,120,622...80,129,166
Ensembl chr 9:80,115,077...80,129,504
JBrowse link
G LOC120100003 40S ribosomal protein S12-like part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:220,574,554...220,577,707
Ensembl chr 1:220,577,097...220,577,495
JBrowse link
G Mphosph10 M-phase phosphoprotein 10 part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr 1:117,948,134...117,964,149
Ensembl chr 1:117,948,134...117,964,149
JBrowse link
G Nat10 N-acetyltransferase 10 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 3:90,111,643...90,149,891
Ensembl chr 3:90,111,645...90,149,927
JBrowse link
G Ngdn neuroguidin part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr15:28,489,950...28,497,286
Ensembl chr15:28,490,040...28,519,654
JBrowse link
G Noc4l nucleolar complex associated 4 homolog part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:46,016,077...46,020,615
Ensembl chr12:46,016,069...46,020,614
JBrowse link
G Nol10 nucleolar protein 10 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:40,144,217...40,225,353
Ensembl chr 6:40,144,235...40,225,353
JBrowse link
G Nol6 nucleolar protein 6 part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336
JBrowse link
G Nol7 nucleolar protein 7 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr17:21,303,650...21,306,924
Ensembl chr17:21,302,624...21,307,431
JBrowse link
G Nop14 NOP14 nucleolar protein part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:76,081,313...76,102,454
Ensembl chr14:76,080,793...76,102,453
JBrowse link
G Nop56 NOP56 ribonucleoprotein part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr 3:117,476,963...117,481,847
Ensembl chr 3:117,477,053...117,481,841
JBrowse link
G Nop58 NOP58 ribonucleoprotein part_of IEA
ISO
ISS
IBA
GO_REF:0000002
(PMID:34516797)
GO_REF:0000024
GO_REF:0000033
InterPro
RGD
UniProt
GO_Central
PMID:34516797 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 9:61,120,939...61,144,810
Ensembl chr 9:61,120,929...61,144,810
JBrowse link
G Pdcd11 programmed cell death 11 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:245,980,840...246,021,999
Ensembl chr 1:245,980,880...246,021,999
JBrowse link
G Pno1 partner of NOB1 homolog part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr14:91,609,711...91,618,280
Ensembl chr14:91,609,233...91,618,324
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit part_of ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Pwp2 PWP2, small subunit processome component part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315
JBrowse link
G Rps11 ribosomal protein S11 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 1:95,605,690...95,607,798
Ensembl chr 1:95,605,692...95,607,874
JBrowse link
G Rps12 ribosomal protein S12 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 1:21,680,854...21,683,010
Ensembl chr 1:21,680,852...21,683,014
JBrowse link
G Rps12l1 ribosomal protein S12 like 1 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:34,343,930...34,344,569
Ensembl chr19:34,343,929...34,344,569
JBrowse link
G Rps12l12 ribosomal protein S12-like 12 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 3:117,490,998...117,491,509
Ensembl chr 3:117,491,079...117,491,477
JBrowse link
G Rps12l2 ribosomal protein S12-like 2 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:252,597,641...252,598,162
Ensembl chr 1:252,597,664...252,598,155
JBrowse link
G Rps12l7 ribosomal protein S12-like 7 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:56,967,192...56,987,008
Ensembl chr 5:56,967,236...56,967,634
JBrowse link
G Rps12l9 ribosomal protein S12 like 9 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:76,616,556...76,617,067
Ensembl chr 1:76,616,570...76,617,079
JBrowse link
G Rps13 ribosomal protein S13 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 1:170,572,925...170,575,355
Ensembl chr 1:170,572,921...170,575,355
Ensembl chr 3:170,572,921...170,575,355
JBrowse link
G Rps14 ribosomal protein S14 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166
JBrowse link
G Rps15a ribosomal protein S15a part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 1:172,420,151...172,427,021
Ensembl chr 1:172,419,761...172,426,995
JBrowse link
G Rps16 ribosomal protein S16 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
JBrowse link
G Rps17 ribosomal protein S17 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 1:135,295,920...135,298,506
Ensembl chr 1:135,295,919...135,298,535
Ensembl chr 8:135,295,919...135,298,535
JBrowse link
G Rps19 ribosomal protein S19 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps19bp1 ribosomal protein S19 binding protein 1 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 7:111,809,354...111,812,741
Ensembl chr 7:111,809,355...111,812,757
JBrowse link
G Rps23 ribosomal protein S23 part_of ISO
ISS
IEA
(PMID:34516797)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:34516797 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918
JBrowse link
G Rps24 ribosomal protein S24 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr16:89,538...94,267
Ensembl chr16:89,604...94,279
JBrowse link
G Rps27 ribosomal protein S27 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 2:175,665,858...175,666,963
Ensembl chr 2:175,665,853...175,666,964
JBrowse link
G Rps27a ribosomal protein S27a part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr14:103,285,734...103,288,011
Ensembl chr14:103,285,734...103,288,011
Ensembl chr 5:103,285,734...103,288,011
JBrowse link
G Rps28 ribosomal protein S28 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170
JBrowse link
G Rps3a ribosomal protein S3a part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 2:171,524,685...171,529,054
Ensembl chr 2:171,524,500...171,529,055
JBrowse link
G Rps4x ribosomal protein S4, X-linked part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr  X:67,298,522...67,302,965
Ensembl chr  X:67,298,525...67,303,019
Ensembl chr 4:67,298,525...67,303,019
JBrowse link
G Rps5 ribosomal protein S5 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 1:73,538,776...73,543,073
Ensembl chr 1:73,538,776...73,543,073
JBrowse link
G Rps6 ribosomal protein S6 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 5:101,371,716...101,374,576
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602
JBrowse link
G Rps7 ribosomal protein S7 part_of ISO
ISS
IBA
(PMID:34516797)
GO_REF:0000024
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:34516797 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:45,266,200...45,271,064
Ensembl chr 6:45,223,980...45,271,145
JBrowse link
G Rps8 ribosomal protein S8 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 5:130,630,362...130,632,932
Ensembl chr 5:130,629,716...130,633,268
JBrowse link
G Rps9 ribosomal protein S9 part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 1:65,511,723...65,515,076
Ensembl chr 1:65,511,723...65,515,123
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817
JBrowse link
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr 8:107,116,411...107,126,123
Ensembl chr 8:107,117,471...107,126,123
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 part_of ISO
ISS
IBA
(PMID:34516797)
GO_REF:0000024
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:34516797 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872
JBrowse link
G Snu13l1 small nuclear ribonucleoprotein 13 like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473
JBrowse link
G Tbl3 transducin (beta)-like 3 part_of IEA
ISO
ISS
GO_REF:0000002
(PMID:34516797)
GO_REF:0000024
InterPro
RGD
UniProt
PMID:34516797 GO_REF:0000002 GO_REF:0000024 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372
JBrowse link
G Utp11 UTP11, small subunit processome component part_of IEA
ISO
ISS
IBA
GO_REF:0000104
(PMID:34516797)
GO_REF:0000024
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:34516797 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 5:136,931,279...136,946,164
Ensembl chr 5:136,931,008...136,946,191
JBrowse link
G Utp14a UTP14A small subunit processome component part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:127,439,282...127,464,634
Ensembl chr  X:127,439,268...127,464,633
JBrowse link
G Utp15 UTP15, small subunit processome component part_of ISO
ISS
(PMID:34516797)
GO_REF:0000024
RGD
UniProt
PMID:34516797 GO_REF:0000024 NCBI chr 2:29,594,405...29,612,819
Ensembl chr 2:29,594,941...29,612,773
JBrowse link
G Utp18 UTP18 small subunit processome component part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr10:78,811,879...78,839,338
Ensembl chr10:78,811,880...78,839,627
JBrowse link
G Utp20 UTP20 small subunit processome component part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr 7:23,134,630...23,215,639
Ensembl chr 7:23,134,637...23,215,632
JBrowse link
G Utp23 UTP23, small subunit processome component part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:83,185,187...83,196,652
Ensembl chr 7:83,189,656...83,196,655
JBrowse link
G Utp25 UTP25 small subunit processome component part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:104,630,390...104,651,681
Ensembl chr13:104,630,391...104,651,662
JBrowse link
G Utp3 UTP3, small subunit processome component part_of ISO
ISS
IBA
(PMID:34516797)
GO_REF:0000024
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:34516797 GO_REF:0000024 GO_REF:0000033 NCBI chr14:19,515,716...19,517,370
Ensembl chr14:19,515,669...19,517,396
JBrowse link
G Utp4 UTP4 small subunit processome component part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550
JBrowse link
G Utp6 UTP6 small subunit processome component part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr10:64,897,321...64,927,997
Ensembl chr10:64,897,328...64,927,997
JBrowse link
G Wdr3 WD repeat domain 3 part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr 2:187,505,816...187,528,432
Ensembl chr 2:187,505,816...187,528,432
JBrowse link
G Wdr36 WD repeat domain 36 part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr18:24,473,657...24,501,773
Ensembl chr18:24,473,663...24,508,092
JBrowse link
G Wdr43 WD repeat domain 43 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846
JBrowse link
G Wdr46 WD repeat domain 46 part_of ISO
IBA
(PMID:34516797)
GO_REF:0000033
RGD
GO_Central
PMID:34516797 GO_REF:0000033 NCBI chr20:4,937,845...4,945,796
Ensembl chr20:4,937,847...4,946,535
JBrowse link
G Wdr75 WD repeat domain 75 part_of ISO (PMID:34516797) RGD PMID:34516797 NCBI chr 9:47,903,214...47,933,399
Ensembl chr 9:47,903,200...47,933,399
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 part_of ISO (PMID:32103174) RGD PMID:32103174 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20813
    protein-containing complex 6433
      ribonucleoprotein complex 1245
        preribosome 114
          small-subunit processome 80
paths to the root