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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle lumen
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Accession:GO:0031983 term browser browse the term
Definition:The volume enclosed by the membrane or protein that forms a vesicle.
Synonyms:xref: NIF_Subcellular:sao797538226



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vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOB apolipoprotein B ISO RGD PMID:12091487 RGD:1626402 NCBI chr 3:117,250,096...117,316,200
Ensembl chr 3:117,250,096...117,316,200
JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRSS57 serine protease 57 located_in ISO (PMID:23904161) UniProt PMID:23904161 NCBI chr 2:77,649,741...77,657,627
Ensembl chr 2:77,650,879...77,655,712
JBrowse link
G PRTN3 proteinase 3 located_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:77,520,314...77,526,303
Ensembl chr 2:77,520,314...77,523,563
JBrowse link
chromaffin granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase located_in IEA UniProt
UniProt
GO_REF:0000044 NCBI chr 1:273,204,407...273,225,562
Ensembl chr 1:273,204,175...273,225,552
JBrowse link
G PENK proenkephalin located_in IEA UniProt
UniProt
GO_REF:0000044 NCBI chr 4:75,525,497...75,530,403
Ensembl chr 4:75,525,555...75,530,876
JBrowse link
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase located_in IEA UniProt
UniProt
GO_REF:0000044 NCBI chr17:47,044,492...47,072,232
Ensembl chr17:47,044,497...47,072,245
JBrowse link
G FASLG Fas ligand located_in IEA UniProt
UniProt
GO_REF:0000044 NCBI chr 9:115,068,314...115,075,147
Ensembl chr 9:115,068,090...115,076,464
JBrowse link
G SERPINI1 serpin family I member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:106,559,326...106,636,930
Ensembl chr13:106,559,736...106,658,110
JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGFR epidermal growth factor receptor located_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,475,589
JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IGF1 insulin like growth factor 1 is_active_in ISO (MGI:6109533|PMID:28683263) SynGO PMID:28683263 MGI:6109533 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,033
JBrowse link
G PDYN prodynorphin is_active_in ISO PMID:7911809 SynGO PMID:7911809 RGD:13702229 NCBI chr17:33,505,075...33,521,534
Ensembl chr17:33,505,079...33,521,532
JBrowse link
G PENK proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 4:75,525,497...75,530,403
Ensembl chr 4:75,525,555...75,530,876
JBrowse link
G VPS13A vacuolar protein sorting 13 homolog A located_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:230,069,339...230,331,343
Ensembl chr 1:230,069,368...230,331,200
JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:273,204,407...273,225,562
Ensembl chr 1:273,204,175...273,225,552
JBrowse link
G GRP gastrin releasing peptide located_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 1:161,708,815...161,721,986
Ensembl chr 1:161,708,812...161,721,782
JBrowse link
G SERPINI1 serpin family I member 1 located_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:106,559,326...106,636,930
Ensembl chr13:106,559,736...106,658,110
JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PENK proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 4:75,525,497...75,530,403
Ensembl chr 4:75,525,555...75,530,876
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17838
    cellular anatomical entity 17613
      membrane-enclosed lumen 4325
        organelle lumen 4325
          vesicle lumen 13
            cytoplasmic vesicle lumen + 11
            multivesicular body, internal vesicle lumen 1
Path 2
Term Annotations click to browse term
  cellular_component 17838
    cellular anatomical entity 17613
      organelle 12018
        membrane-bounded organelle 11080
          vesicle 2019
            vesicle lumen 13
              cytoplasmic vesicle lumen + 11
              multivesicular body, internal vesicle lumen 1
paths to the root