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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle lumen
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Accession:GO:0031983 term browser browse the term
Definition:The volume enclosed by the membrane or protein that forms a vesicle.
Synonyms:xref: NIF_Subcellular:sao797538226



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vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apob apolipoprotein B located_in ISO MGI
RGD
PMID:12091487 GO_REF:0000096 MGI:4417868 RGD:1626402 NCBI chr12:8,027,629...8,066,839
Ensembl chr12:8,027,648...8,066,835
JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prss57 protease, serine 57 located_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:79,617,308...79,630,523
Ensembl chr10:79,617,308...79,626,795
JBrowse link
G Prtn3 proteinase 3 located_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:79,715,501...79,719,008
Ensembl chr10:79,710,310...79,719,008
JBrowse link
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpini1 serine (or cysteine) peptidase inhibitor, clade I, member 1 located_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:75,464,800...75,549,830
Ensembl chr 3:75,464,854...75,550,802
JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor located_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:16,700,153...16,868,158
Ensembl chr11:16,702,203...16,868,158
JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf1 insulin-like growth factor 1 is_active_in IDA
IMP
(MGI:6109533|PMID:28683263) SynGO PMID:28683263 MGI:6109533 NCBI chr10:87,694,127...87,772,909
Ensembl chr10:87,694,127...87,772,904
JBrowse link
G Pdyn prodynorphin is_active_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 2:129,528,469...129,541,858
Ensembl chr 2:129,528,485...129,541,764
JBrowse link
G Penk preproenkephalin is_active_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 4:4,133,536...4,138,815
Ensembl chr 4:4,133,531...4,138,819
JBrowse link
G Vps13a vacuolar protein sorting 13A located_in IDA (MGI:5316152|PMID:22366033) UniProt PMID:22366033 MGI:5316152 NCBI chr19:16,592,730...16,758,433
Ensembl chr19:16,592,730...16,758,297
JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta hydroxylase located_in IDA
ISO
(MGI:5785000|PMID:7961964) UniProt
MGI
PMID:7961964 GO_REF:0000096 MGI:4834177 MGI:5785000 NCBI chr 2:27,055,519...27,073,216
Ensembl chr 2:27,055,245...27,073,212
JBrowse link
G Gcg glucagon part_of TAS Reactome Reactome:R-MMU-508205 Reactome:R-MMU-508217 NCBI chr 2:62,304,874...62,313,997
Ensembl chr 2:62,304,874...62,313,994
JBrowse link
G Gip gastric inhibitory polypeptide part_of TAS Reactome Reactome:R-MMU-508227 NCBI chr11:95,915,358...95,921,657
Ensembl chr11:95,915,371...95,921,657
JBrowse link
G Ins1 insulin I part_of TAS Reactome Reactome:R-MMU-216806 Reactome:R-MMU-216852 Reactome:R-MMU-216883 Reactome:R-MMU-9023194 Reactome:R-MMU-9023204 NCBI chr19:52,252,735...52,253,453
Ensembl chr19:52,252,735...52,253,914
JBrowse link
G Ins2 insulin II part_of TAS Reactome Reactome:R-MMU-216806 Reactome:R-MMU-216852 Reactome:R-MMU-216883 Reactome:R-MMU-9023194 Reactome:R-MMU-9023204 NCBI chr 7:142,232,393...142,233,463
Ensembl chr 7:142,232,393...142,297,118
JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 part_of TAS Reactome Reactome:R-MMU-216806 Reactome:R-MMU-508205 Reactome:R-MMU-508217 Reactome:R-MMU-508227 NCBI chr13:75,237,407...75,282,980
Ensembl chr13:75,237,945...75,282,980
JBrowse link
G Pcsk2 proprotein convertase subtilisin/kexin type 2 part_of TAS Reactome Reactome:R-MMU-216806 NCBI chr 2:143,388,053...143,658,204
Ensembl chr 2:143,388,076...143,658,205
JBrowse link
G Serpini1 serine (or cysteine) peptidase inhibitor, clade I, member 1 located_in IDA (MGI:3699790|PMID:17040209) UniProt PMID:17040209 MGI:3699790 NCBI chr 3:75,464,800...75,549,830
Ensembl chr 3:75,464,854...75,550,802
JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Penk preproenkephalin is_active_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 4:4,133,536...4,138,815
Ensembl chr 4:4,133,531...4,138,819
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28539
    cellular anatomical entity 19449
      membrane-enclosed lumen 4706
        organelle lumen 4706
          vesicle lumen 16
            cytoplasmic vesicle lumen + 14
            multivesicular body, internal vesicle lumen 1
Path 2
Term Annotations click to browse term
  cellular_component 28539
    cellular anatomical entity 19449
      organelle 13323
        membrane-bounded organelle 12408
          vesicle 2352
            vesicle lumen 16
              cytoplasmic vesicle lumen + 14
              multivesicular body, internal vesicle lumen 1
paths to the root