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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle lumen
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Accession:GO:0031983 term browser browse the term
Definition:The volume enclosed by the membrane or protein that forms a vesicle.
Synonyms:xref: NIF_Subcellular:sao797538226


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vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apob apolipoprotein B ISO RGD PMID:12091487 RGD:1626402 NCBI chrNW_004955469:3,437,422...3,478,408
Ensembl chrNW_004955469:3,436,450...3,478,424
JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prss57 serine protease 57 located_in ISO (PMID:23904161) UniProt PMID:23904161 NCBI chrNW_004955495:7,067,844...7,077,048 JBrowse link
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpini1 serpin family I member 1 located_in ISO (PMID:17040209) UniProt PMID:17040209 NCBI chrNW_004955448:16,947,375...16,982,114
Ensembl chrNW_004955448:16,947,403...16,984,130
JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor located_in ISO (PMID:17714434) UniProt PMID:17714434 NCBI chrNW_004955456:321,222...456,431 JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf1 insulin like growth factor 1 is_active_in ISO (MGI:6109533|PMID:28683263) SynGO PMID:28683263 MGI:6109533 NCBI chrNW_004955405:37,505,830...37,582,152
Ensembl chrNW_004955405:37,512,201...37,582,152
JBrowse link
G Pdyn prodynorphin is_active_in ISO PMID:7911809 SynGO PMID:7911809 RGD:13702229 NCBI chrNW_004955415:13,106,087...13,119,497
Ensembl chrNW_004955415:13,106,062...13,119,515
JBrowse link
G Penk proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chrNW_004955454:15,425,712...15,426,685
Ensembl chrNW_004955454:15,426,017...15,426,685
JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A located_in ISO (MGI:5316152|PMID:22366033) UniProt PMID:22366033 MGI:5316152 NCBI chrNW_004955512:2,037,803...2,267,197
Ensembl chrNW_004955512:2,039,115...2,267,099
JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase located_in ISO (PMID:7961964)
(MGI:5785000|PMID:7961964)
UniProt PMID:7961964 MGI:5785000 NCBI chrNW_004955513:2,918,085...2,932,481
Ensembl chrNW_004955513:2,918,286...2,932,247
JBrowse link
G Serpini1 serpin family I member 1 located_in ISO (MGI:3699790|PMID:17040209) UniProt PMID:17040209 MGI:3699790 NCBI chrNW_004955448:16,947,375...16,982,114
Ensembl chrNW_004955448:16,947,403...16,984,130
JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Penk proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chrNW_004955454:15,425,712...15,426,685
Ensembl chrNW_004955454:15,426,017...15,426,685
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12388
    cellular anatomical entity 12230
      membrane-enclosed lumen 3910
        organelle lumen 3910
          vesicle lumen 9
            cytoplasmic vesicle lumen + 7
            multivesicular body, internal vesicle lumen 1
Path 2
Term Annotations click to browse term
  cellular_component 12388
    cellular anatomical entity 12230
      organelle 9699
        membrane-bounded organelle 8919
          vesicle 1593
            vesicle lumen 9
              cytoplasmic vesicle lumen + 7
              multivesicular body, internal vesicle lumen 1
paths to the root