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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle lumen
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Accession:GO:0031983 term browser browse the term
Definition:The volume enclosed by the membrane or protein that forms a vesicle.
Synonyms:xref: NIF_Subcellular:sao797538226



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vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOB apolipoprotein B ISO RGD PMID:12091487 RGD:1626402 NCBI chr2A:20,986,464...21,029,004
Ensembl chr2A:21,100,356...21,145,129
JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRSS57 serine protease 57 located_in ISO (PMID:23904161) UniProt PMID:23904161 NCBI chr19:440,415...452,535 JBrowse link
G PRTN3 proteinase 3 located_in ISO (PMID:18462208) UniProt PMID:18462208 NCBI chr19:283,314...291,504 JBrowse link
chromaffin granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase located_in IEA UniProt GO_REF:0000044 NCBI chr 9:104,761,504...104,784,445
Ensembl chr 9:133,371,821...133,393,697
JBrowse link
G PENK proenkephalin located_in IEA UniProt GO_REF:0000044 NCBI chr 8:52,864,388...52,870,144
Ensembl chr 8:50,234,170...50,239,949
JBrowse link
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase located_in IEA UniProt GO_REF:0000044 NCBI chr20:40,950,238...40,982,481
Ensembl chr20:42,044,613...42,076,868
JBrowse link
G FASLG Fas ligand located_in IEA UniProt GO_REF:0000044 NCBI chr 1:148,159,826...148,167,785
Ensembl chr 1:151,868,430...151,876,281
JBrowse link
G SERPINI1 serpin family I member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:164,755,803...164,845,572
Ensembl chr 3:172,865,891...172,902,372
JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGFR epidermal growth factor receptor located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:55,614,042...55,807,285
Ensembl chr 7:56,046,296...56,111,615
JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IGF1 insulin like growth factor 1 is_active_in ISO (MGI:6109533|PMID:28683263) SynGO PMID:28683263 MGI:6109533 NCBI chr12:99,986,887...100,066,773
Ensembl chr12:103,385,911...103,462,177
JBrowse link
G PDYN prodynorphin is_active_in ISO PMID:7911809 SynGO PMID:7911809 RGD:13702229 NCBI chr20:2,092,171...2,108,141
Ensembl chr20:1,856,850...1,872,452
JBrowse link
G PENK proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 8:52,864,388...52,870,144
Ensembl chr 8:50,234,170...50,239,949
JBrowse link
G VPS13A vacuolar protein sorting 13 homolog A located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:47,424,921...47,668,150
Ensembl chr 9:76,032,286...76,269,636
JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:104,761,504...104,784,445
Ensembl chr 9:133,371,821...133,393,697
JBrowse link
G SERPINI1 serpin family I member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:164,755,803...164,845,572
Ensembl chr 3:172,865,891...172,902,372
JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PENK proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 8:52,864,388...52,870,144
Ensembl chr 8:50,234,170...50,239,949
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 15634
    cellular anatomical entity 15385
      membrane-enclosed lumen 4273
        organelle lumen 4273
          vesicle lumen 12
            cytoplasmic vesicle lumen + 10
            multivesicular body, internal vesicle lumen 1
Path 2
Term Annotations click to browse term
  cellular_component 15634
    cellular anatomical entity 15385
      organelle 11162
        membrane-bounded organelle 10168
          vesicle 1796
            vesicle lumen 12
              cytoplasmic vesicle lumen + 10
              multivesicular body, internal vesicle lumen 1
paths to the root