Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle lumen
go back to main search page
Accession:GO:0031983 term browser browse the term
Definition:The volume enclosed by the membrane or protein that forms a vesicle.
Synonyms:xref: NIF_Subcellular:sao797538226



show annotations for term's descendants           Sort by:
 
vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apob apolipoprotein B IDA RGD PMID:12091487 RGD:1626402 NCBI chr 6:30,844,386...30,883,983
Ensembl chr 6:30,844,368...30,892,497
JBrowse link
acrosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata31a5 SPATA31 subfamily A member 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:243,648...249,434
Ensembl chr17:243,654...249,434
JBrowse link
G Zp3r zona pellucida 3 receptor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:42,019,998...42,064,836
Ensembl chr13:42,020,018...42,064,812
JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prss57 serine protease 57 located_in ISS
ISO
GO_REF:0000024
(PMID:23904161)
UniProt
RGD
PMID:23904161 GO_REF:0000024 NCBI chr 7:9,915,667...9,922,996
Ensembl chr 7:9,917,484...9,922,922
JBrowse link
G Prtn3 proteinase 3 located_in ISO (PMID:18462208) RGD PMID:18462208 NCBI chr 7:9,822,123...9,831,300
Ensembl chr 7:9,822,122...9,831,944
JBrowse link
chromaffin granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Penk proenkephalin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:17,183,799...17,189,160
Ensembl chr 5:17,183,806...17,189,129
JBrowse link
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Faslg Fas ligand located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215
JBrowse link
G Lcn2 lipocalin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:15,680,688...15,684,033
Ensembl chr 3:15,680,687...15,684,095
JBrowse link
G Serpini1 serpin family I member 1 located_in ISS
ISO
GO_REF:0000024
(PMID:17040209)
UniProt
RGD
PMID:17040209 GO_REF:0000024 NCBI chr 2:160,346,403...160,433,135
Ensembl chr 2:160,346,758...160,433,135
JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor located_in ISO (PMID:17714434) RGD PMID:17714434 NCBI chr14:91,176,931...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf1 insulin-like growth factor 1 is_active_in ISO (MGI:6109533|PMID:28683263) RGD PMID:28683263 MGI:6109533 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Pdyn prodynorphin is_active_in IDA PMID:7911809 SynGO PMID:7911809 RGD:13702229 NCBI chr 3:116,900,990...116,913,334
Ensembl chr 3:116,900,992...116,913,334
JBrowse link
G Penk proenkephalin is_active_in IDA PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 5:17,183,799...17,189,160
Ensembl chr 5:17,183,806...17,189,129
JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A located_in ISO (MGI:5316152|PMID:22366033) RGD PMID:22366033 MGI:5316152 NCBI chr 1:213,901,999...214,128,638
Ensembl chr 1:213,901,999...214,128,555
JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase located_in ISO
ISS
(PMID:7961964)
(MGI:5785000|PMID:7961964)
GO_REF:0000024
RGD
UniProt
PMID:7961964 GO_REF:0000024 MGI:5785000 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Grp gastrin releasing peptide located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:59,388,679...59,402,061
Ensembl chr18:59,388,274...59,402,061
JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 located_in TAS Reactome:R-NUL-9023165 Reactome Reactome:R-NUL-9023165 NCBI chr 2:4,395,543...4,442,434
Ensembl chr 2:4,395,543...4,442,434
JBrowse link
G Pcsk2 proprotein convertase subtilisin/kexin type 2 located_in TAS Reactome:R-NUL-9023180 Reactome Reactome:R-NUL-9023180 NCBI chr 3:130,880,422...131,183,127
Ensembl chr 3:130,880,422...131,183,127
JBrowse link
G Serpini1 serpin family I member 1 located_in ISO (MGI:3699790|PMID:17040209) RGD PMID:17040209 MGI:3699790 NCBI chr 2:160,346,403...160,433,135
Ensembl chr 2:160,346,758...160,433,135
JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Penk proenkephalin is_active_in IDA PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 5:17,183,799...17,189,160
Ensembl chr 5:17,183,806...17,189,129
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20630
    cellular anatomical entity 20384
      membrane-enclosed lumen 4532
        organelle lumen 4532
          vesicle lumen 18
            cytoplasmic vesicle lumen + 16
            multivesicular body, internal vesicle lumen 1
Path 2
Term Annotations click to browse term
  cellular_component 20630
    cellular anatomical entity 20384
      organelle 13567
        membrane-bounded organelle 12079
          vesicle 2183
            vesicle lumen 18
              cytoplasmic vesicle lumen + 16
              multivesicular body, internal vesicle lumen 1
paths to the root