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ONTOLOGY REPORT - ANNOTATIONS


Term:filamentous actin
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Accession:GO:0031941 term browser browse the term
Definition:A two-stranded helical polymer of the protein actin.
Comment:Note that this term refers only to the actin portion of a microfilament, and does not encompass associated proteins. See also the cellular component term 'actin filament ; GO:0005884'.
Synonyms:exact_synonym: F-actin
 xref: Wikipedia:Actin


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filamentous actin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actg1 actin, gamma 1 ISO (MGI:MGI:3821785|PMID:18796539) RGD PMID:18796539 MGI:MGI:3821785 NCBI chr10:109,518,429...109,521,288
Ensembl chr 3:75,643,054...75,644,954
Ensembl chr10:75,643,054...75,644,954
JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 colocalizes_with ISO (PMID:25753423) RGD PMID:25753423 NCBI chr 7:12,258,468...12,280,459
Ensembl chr 7:12,258,468...12,275,609
JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 IDA RGD PMID:10797548 RGD:11049163 NCBI chr 9:81,518,163...81,548,871
Ensembl chr 9:81,518,176...81,548,871
JBrowse link
G Arpc3 actin related protein 2/3 complex, subunit 3 IDA RGD PMID:10797548 RGD:11049163 NCBI chr12:39,653,951...39,667,817
Ensembl chr12:39,653,953...39,667,849
JBrowse link
G Carmil1 capping protein regulator and myosin 1 linker 1 ISO (MGI:MGI:3588909|PMID:16054028) RGD PMID:16054028 MGI:MGI:3588909 NCBI chr17:43,050,282...43,339,403
Ensembl chr17:43,050,789...43,339,403
JBrowse link
G Cd2ap CD2-associated protein ISO (PMID:10339567) RGD PMID:10339567 NCBI chr 9:20,794,680...20,858,438
Ensembl chr 9:20,765,296...20,858,504
JBrowse link
G Dpysl3 dihydropyrimidinase-like 3 IDA PMID:16181627 UniProt PMID:16181627 RGD:8553533 NCBI chr18:37,716,371...37,819,347
Ensembl chr18:37,716,143...37,819,097
JBrowse link
G Dusp22 dual specificity phosphatase 22 ISO (PMID:20018849) RGD PMID:20018849 NCBI chr17:34,986,589...35,037,297
Ensembl chr17:34,986,591...35,037,076
JBrowse link
G Ehbp1 EH domain binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:106,871,426...107,160,224
Ensembl chr14:106,871,430...107,160,334
JBrowse link
G Ehbp1l1 EH domain binding protein 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,061,878...221,084,423
Ensembl chr 1:221,062,147...221,084,129
JBrowse link
G Espn espin IDA PMID:8799813 UniProt PMID:8799813 RGD:632658 NCBI chr 5:169,293,356...169,331,338
Ensembl chr 5:169,293,904...169,331,163
JBrowse link
G Jam3 junctional adhesion molecule 3 ISO (PMID:19060272) RGD PMID:19060272 NCBI chr 8:28,147,110...28,208,466
Ensembl chr 8:28,147,111...28,208,466
JBrowse link
G Kptn kaptin (actin binding protein) colocalizes_with ISO (PMID:24239382) RGD PMID:24239382 NCBI chr 1:78,015,714...78,016,508 JBrowse link
G Kptn kaptin colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:78,015,722...78,023,676 JBrowse link
G Ldb3 LIM domain binding 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:10,878,348...10,943,016
Ensembl chr16:10,878,334...10,941,501
JBrowse link
G LOC103690128 smoothelin-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:80,678,919...80,682,296
Ensembl chr14:80,678,467...80,680,738
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO (MGI:MGI:5608927|PMID:25224220) RGD PMID:25224220 MGI:MGI:5608927 NCBI chr 2:43,329,516...43,393,203
Ensembl chr 2:43,329,516...43,393,207
JBrowse link
G Micalcl MICAL C-terminal like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:177,183,436...177,232,674
Ensembl chr 1:177,183,209...177,232,691
JBrowse link
G Myo18b myosin XVIIIb ISO (MGI:MGI:3821523|PMID:18761673) RGD PMID:18761673 MGI:MGI:3821523 NCBI chr12:49,761,100...49,979,745
Ensembl chr12:49,761,120...49,979,758
JBrowse link
G Myo1a myosin IA IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:9858156)
Ensembl
UniProt
RGD
PMID:9858156 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:71,000,299...71,019,386
Ensembl chr 7:71,004,417...71,019,372
JBrowse link
G Myo1c myosin 1C ISO (PMID:9858156) RGD PMID:9858156 NCBI chr10:63,803,311...63,819,614
Ensembl chr10:63,803,309...63,819,614
JBrowse link
G Myo1f myosin IF ISO (MGI:MGI:3664353|PMID:17023661) RGD PMID:17023661 MGI:MGI:3664353 NCBI chr 7:18,440,742...18,491,448
Ensembl chr 7:18,440,742...18,491,448
JBrowse link
G Myo3a myosin IIIA ISO (PMID:12672820) RGD PMID:12672820 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
JBrowse link
G Myo6 myosin VI ISO (PMID:9852149)
(PMID:10519557)
RGD PMID:9852149, PMID:10519557 NCBI chr 8:87,583,649...87,731,271
Ensembl chr 8:87,630,916...87,731,269
JBrowse link
G Nckap1 NCK-associated protein 1 ISO (MGI:MGI:5897521|PMID:27927633) RGD PMID:27927633 MGI:MGI:5897521 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Pdlim1 PDZ and LIM domain 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:259,308,326...259,357,006
Ensembl chr 1:259,308,296...259,357,056
JBrowse link
G Pdlim2 PDZ and LIM domain 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:51,843,562...51,856,785
Ensembl chr15:51,843,564...51,855,325
JBrowse link
G Pdlim3 PDZ and LIM domain 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:49,543,140...49,574,362
Ensembl chr16:49,543,142...49,574,390
JBrowse link
G Pdlim4 PDZ and LIM domain 4 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:10826496)
Ensembl
RGD
PMID:10826496, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:39,390,578...39,405,322
Ensembl chr10:39,390,581...39,405,311
JBrowse link
G Pdlim5 PDZ and LIM domain 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:247,815,214...247,989,198
Ensembl chr 2:247,818,243...247,988,462
JBrowse link
G Pdlim7 PDZ and LIM domain 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:9,653,510...9,668,715
Ensembl chr17:9,653,561...9,668,712
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel colocalizes_with ISO (PMID:16025301) RGD PMID:16025301 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
G Prickle4 prickle planar cell polarity protein 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:15,306,901...15,313,047
Ensembl chr 9:15,309,127...15,313,025
JBrowse link
G Rac3 Rac family small GTPase 3 ISO
IEA
(PMID:16525025)
GO_REF:0000107
RGD
Ensembl
PMID:16525025 GO_REF:0000107 NCBI chr10:109,903,920...109,906,596
Ensembl chr10:109,904,259...109,906,232
JBrowse link
G Smtn smoothelin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:83,755,141...83,776,871
Ensembl chr14:83,755,142...83,776,863
JBrowse link
G Smtnl1 smoothelin-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:72,207,150...72,219,209
Ensembl chr 3:72,207,113...72,219,246
JBrowse link
G Smtnl2 smoothelin-like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:58,951,845...58,973,020
Ensembl chr10:58,951,842...58,973,020
JBrowse link
G Specc1 sperm antigen with calponin homology and coiled-coil domains 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:48,240,291...48,542,171
Ensembl chr10:48,240,127...48,542,292
JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like ISO
IBA
(MGI:MGI:5433266|PMID:21703590)
PMID:21873635
RGD PMID:21703590, PMID:21873635 MGI:MGI:5433266, RGD:13792537 NCBI chr20:14,287,470...14,393,879
Ensembl chr20:14,287,457...14,393,793
JBrowse link
G Tmsb15b2 thymosin beta 15B2 ISO (MGI:MGI:3843053|PMID:19233202) RGD PMID:19233202 MGI:MGI:3843053 NCBI chr  X:107,612,518...107,614,632
Ensembl chr  X:107,612,518...107,614,632
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20609
    protein-containing complex 6093
      filamentous actin 40
Path 2
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20358
      organelle 13258
        non-membrane-bounded organelle 5183
          intracellular non-membrane-bounded organelle 5172
            cytoskeleton 2174
              actin cytoskeleton 517
                actin filament 139
                  filamentous actin 40
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.