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ONTOLOGY REPORT - ANNOTATIONS


Term:microbody lumen
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Accession:GO:0031907 term browser browse the term
Definition:The volume enclosed by the membranes of a microbody.



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peroxisomal matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd3 ATP binding cassette subfamily D member 3 located_in ISO (PMID:9765053) RGD PMID:9765053 NCBI chr 2:209,852,087...209,905,763
Ensembl chr 2:209,852,087...209,906,020
JBrowse link
G Acot8 acyl-CoA thioesterase 8 located_in
is_active_in
ISO
IBA
IEA
(PMID:10092594), (PMID:14709540)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:10092594 PMID:14709540 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 3:153,531,192...153,542,851
Ensembl chr 3:153,531,193...153,542,851
JBrowse link
G Acox1 acyl-CoA oxidase 1 located_in TAS Reactome:R-NUL-9034341 Reactome Reactome:R-NUL-9034341 NCBI chr10:101,406,197...101,431,242
Ensembl chr10:101,406,197...101,431,232
JBrowse link
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase located_in ISO (PMID:22198249), (PMID:3418107) RGD PMID:3418107 PMID:22198249 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336
JBrowse link
G Eci2 enoyl-CoA delta isomerase 2 located_in ISO
IEA
(PMID:10419495)
GO_REF:0000044
RGD
UniProt
PMID:10419495 GO_REF:0000044 NCBI chr17:29,850,884...29,886,781
Ensembl chr17:29,870,391...29,886,781
JBrowse link
G Fabp1 fatty acid binding protein 1 IDA low level constitutive localization increased by clofibrate RGD PMID:16262600 RGD:1626442 NCBI chr 4:103,191,015...103,194,791
Ensembl chr 4:103,191,006...103,194,788
JBrowse link
G Hao1 hydroxyacid oxidase 1 located_in ISO (PMID:10777549) RGD PMID:10777549 NCBI chr 3:121,757,400...121,828,721
Ensembl chr 3:121,771,836...121,828,721
JBrowse link
G Hao2 hydroxyacid oxidase 2 located_in ISO
IEA
(PMID:10777549)
GO_REF:0000107
RGD
Ensembl
PMID:10777549 GO_REF:0000107 NCBI chr 2:186,200,137...186,232,997
Ensembl chr 2:186,200,504...186,224,425
JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 IDA RGD PMID:8882520 RGD:10403038 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662
JBrowse link
G Hspe1 heat shock protein family E (Hsp10) member 1 ISO RGD PMID:8882520 RGD:10403038 NCBI chr 9:56,589,912...56,593,000
Ensembl chr 9:56,589,789...56,593,089
JBrowse link
G Ide insulin degrading enzyme is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11235899 PMID:21873635 RGD:1627575, RGD:13792537 NCBI chr 1:235,002,984...235,102,448
Ensembl chr 1:234,995,351...235,102,440
JBrowse link
G Lonp2 lon peptidase 2, peroxisomal located_in
is_active_in
IDA
IBA
PMID:14561759
PMID:21873635
RGD
HGNC-UCL
GO_Central
PMID:14561759 PMID:14561759 PMID:21873635 RGD:1580664, RGD:1580664, RGD:13792537 NCBI chr19:20,407,475...20,499,030
Ensembl chr19:20,407,477...20,499,014
JBrowse link
G Mlycd malonyl-CoA decarboxylase is_active_in
located_in
IBA
IDA
PMID:21873635
PMID:16298369
GO_Central
UniProt
PMID:21873635 PMID:16298369 RGD:13792537, RGD:1600793 NCBI chr19:47,447,931...47,463,794
Ensembl chr19:47,447,970...47,463,793
JBrowse link
G Mvd mevalonate diphosphate decarboxylase IDA RGD PMID:11767099 RGD:729305 NCBI chr19:50,496,366...50,506,389
Ensembl chr19:50,496,367...50,507,971
JBrowse link
G Paox polyamine oxidase IDA RGD PMID:7560898 RGD:7244191 NCBI chr 1:194,903,267...194,928,504
Ensembl chr 1:194,903,273...194,928,504
JBrowse link
G Pex5 peroxisomal biogenesis factor 5 located_in ISO (PMID:11336669) RGD PMID:11336669 NCBI chr 4:157,270,671...157,296,432
Ensembl chr 4:157,270,672...157,296,431
JBrowse link
G Pex7 peroxisomal biogenesis factor 7 located_in
is_active_in
ISO
IBA
(PMID:11931631)
PMID:21873635
RGD PMID:11931631 PMID:21873635 RGD:13792537 NCBI chr 1:14,582,698...14,646,686
Ensembl chr 1:14,582,699...14,646,748
JBrowse link
G Pomc proopiomelanocortin located_in ISO (PMID:20810565) RGD PMID:20810565 NCBI chr 6:26,939,844...26,945,666
Ensembl chr 6:26,939,837...26,945,664
JBrowse link
G Prdx1 peroxiredoxin 1 IDA RGD PMID:14623930 RGD:2291802 NCBI chr 5:130,147,276...130,162,850
Ensembl chr 5:130,147,204...130,162,856
JBrowse link
G Prdx5 peroxiredoxin 5 located_in IEA
ISO
GO_REF:0000044
(PMID:10514471)
UniProt
RGD
PMID:10514471 GO_REF:0000044 NCBI chr 1:204,099,826...204,103,589
Ensembl chr 1:204,099,826...204,114,268
JBrowse link
G Scp2 sterol carrier protein 2 located_in IDA PMID:8063752 RGD
UniProt
PMID:8063752 PMID:8063752 RGD:9850162, RGD:9850162 NCBI chr 5:122,806,949...122,881,259
Ensembl chr 5:122,776,549...122,881,287
JBrowse link
G Uox urate oxidase TAS RGD PMID:3182808 RGD:730101 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19189
    cellular anatomical entity 18930
      cytoplasm 11201
        microbody 153
          microbody lumen 22
            peroxisomal matrix + 22
Path 2
Term Annotations click to browse term
  cellular_component 19189
    cellular anatomical entity 18930
      organelle 12842
        intracellular organelle 12462
          intracellular membrane-bounded organelle 11100
            microbody 153
              microbody lumen 22
                peroxisomal matrix + 22
paths to the root