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ONTOLOGY REPORT - ANNOTATIONS

Term:microbody lumen
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Accession:GO:0031907 term browser browse the term
Definition:The volume enclosed by the membranes of a microbody.

show annotations for term's descendants           Sort by:
 
peroxisomal matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd3 ATP binding cassette subfamily D member 3 located_in ISO (PMID:9765053) RGD PMID:9765053 NCBI chr 2:225,335,708...225,389,120
Ensembl chr 2:225,335,718...225,389,120 		JBrowse link
G Acot8 acyl-CoA thioesterase 8 located_in
is_active_in
part_of		 ISO
IBA
IEA		 (PMID:10092594), (PMID:14709540)
PMID:21873635
GO_REF:0000107		 RGD
Ensembl		 PMID:10092594 PMID:14709540, PMID:21873635, PMID:21873635 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr 3:161,260,837...161,272,495
Ensembl chr 3:161,259,735...161,272,460 		JBrowse link
G Acox1 acyl-CoA oxidase 1 located_in TAS Reactome:R-NUL-9034341 Reactome Reactome:R-NUL-9034341 NCBI chr10:104,724,534...104,748,003
Ensembl chr10:104,722,958...104,748,050 		JBrowse link
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase located_in ISO (PMID:22198249), (PMID:3418107) RGD PMID:3418107 PMID:22198249 NCBI chr 9:100,281,339...100,291,292
Ensembl chr 9:100,281,339...100,291,291 		JBrowse link
G Eci2 enoyl-CoA delta isomerase 2 located_in ISO
IEA		 (PMID:10419495)
GO_REF:0000044		 RGD
UniProt		 PMID:10419495 GO_REF:0000044 NCBI chr17:30,556,926...30,573,324
Ensembl chr17:30,556,884...30,639,040 		JBrowse link
G Fabp1 fatty acid binding protein 1 IDA low level constitutive localization increased by clofibrate RGD PMID:16262600 RGD:1626442 NCBI chr 4:99,063,181...99,066,957
Ensembl chr 4:99,063,181...99,066,954 		JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 IDA RGD PMID:8882520 RGD:10403038 NCBI chr 9:61,680,529...61,691,202
Ensembl chr 9:61,680,530...61,690,956 		JBrowse link
G Hspe1 heat shock protein family E (Hsp10) member 1 ISO RGD PMID:8882520 RGD:10403038 NCBI chr 9:61,691,246...61,724,948
Ensembl chr 9:61,692,154...61,694,599 		JBrowse link
G Ide insulin degrading enzyme is_active_in
part_of		 IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:11235899, PMID:21873635, PMID:21873635 RGD:1627575, RGD:13792537, RGD:13792537 NCBI chr 1:255,914,465...256,014,168
Ensembl chr 1:255,914,447...256,013,495 		JBrowse link
G Lonp2 lon peptidase 2, peroxisomal is_active_in
part_of		 IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:14561759, PMID:21873635, PMID:21873635 RGD:1580664, RGD:13792537, RGD:13792537 NCBI chr19:21,400,736...21,492,634
Ensembl chr19:21,400,740...21,492,556 		JBrowse link
G Mlycd malonyl-CoA decarboxylase located_in
is_active_in
part_of		 IDA
IBA		 PMID:16298369
PMID:21873635		 UniProt
GO_Central		 PMID:16298369, PMID:21873635, PMID:21873635 RGD:1600793, RGD:13792537, RGD:13792537 NCBI chr19:52,032,950...52,048,773
Ensembl chr19:52,032,886...52,048,753 		JBrowse link
G Mvd mevalonate diphosphate decarboxylase IDA RGD PMID:11767099 RGD:729305 NCBI chr19:55,258,910...55,268,933
Ensembl chr19:55,258,905...55,268,951 		JBrowse link
G Paox polyamine oxidase IDA RGD PMID:7560898 RGD:7244191 NCBI chr 1:212,578,444...212,603,722
Ensembl chr 1:212,578,450...212,603,529 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 located_in ISO (PMID:11336669) RGD PMID:11336669 NCBI chr 4:156,983,914...157,009,675
Ensembl chr 4:156,983,915...157,009,674
Ensembl chr 4:156,983,915...157,009,674 		JBrowse link
G Pex7 peroxisomal biogenesis factor 7 located_in
is_active_in
part_of		 ISO
IBA		 (PMID:11931631)
PMID:21873635		 RGD PMID:11931631, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:15,311,768...15,374,702
Ensembl chr 1:15,311,770...15,374,850 		JBrowse link
G Pomc proopiomelanocortin located_in ISO (PMID:20810565) RGD PMID:20810565 NCBI chr 6:28,382,937...28,388,771
Ensembl chr 6:28,382,962...28,388,967 		JBrowse link
G Prdx1 peroxiredoxin 1 IDA RGD PMID:14623930 RGD:2291802 NCBI chr 5:135,536,413...135,551,986
Ensembl chr 5:135,536,413...135,551,990 		JBrowse link
G Prdx5 peroxiredoxin 5 located_in IEA
ISO		 GO_REF:0000044
(PMID:10514471)		 UniProt
RGD		 PMID:10514471 GO_REF:0000044 NCBI chr 1:222,164,462...222,167,447
Ensembl chr 1:222,164,462...222,167,447 		JBrowse link
G Scp2 sterol carrier protein 2 located_in IDA PMID:8063752 RGD
UniProt		 PMID:8063752, PMID:8063752 RGD:9850162, RGD:9850162 NCBI chr 5:127,647,934...127,735,703
Ensembl chr 5:127,620,274...127,735,739 		JBrowse link
G Uox urate oxidase TAS RGD PMID:3182808 RGD:730101 NCBI chr 2:252,452,282...252,488,497
Ensembl chr 2:252,452,269...252,488,396 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20137
    cellular anatomical entity 19833
      cytoplasm 11381
        microbody 159
          microbody lumen 20
            peroxisomal matrix + 20
Path 2
Term Annotations click to browse term
  cellular_component 20137
    cellular anatomical entity 19833
      organelle 13116
        intracellular organelle 12757
          intracellular membrane-bounded organelle 11200
            microbody 159
              microbody lumen 20
                peroxisomal matrix + 20
paths to the root