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ONTOLOGY REPORT - ANNOTATIONS

Term:cellular response to nutrient
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Accession:GO:0031670 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.


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cellular response to nutrient term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT2 acetyl-CoA acetyltransferase 2 ISO N-acetylcysteine RGD PMID:12563020 RGD:1598705 NCBI chr 1:49,011,665...49,029,368
Ensembl chr 1:49,011,706...49,029,327 		JBrowse link
G CCNE1 cyclin E1 ISO RGD PMID:17979132 RGD:2289272 NCBI chr 1:121,688,622...121,697,533
Ensembl chr 1:121,688,796...121,697,649 		JBrowse link
G CDKN2B cyclin dependent kinase inhibitor 2B involved_in IEA
ISS		 Ensembl
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:41,259,627...41,264,832 JBrowse link
G DBI diazepam binding inhibitor, acyl-CoA binding protein ISO RGD PMID:15825833 RGD:2316268 NCBI chr19:30,640,429...30,645,704
Ensembl chr19:30,640,429...30,646,405 		JBrowse link
G HMOX1 heme oxygenase 1 ISO RGD PMID:15531134 RGD:1582714 NCBI chr10:28,744,404...28,751,544
Ensembl chr10:28,743,795...28,751,773 		JBrowse link
G LPL lipoprotein lipase involved_in ISO (MGI:6282942|PMID:21986524) ARUK-UCL PMID:21986524 MGI:6282942 NCBI chr25:37,078,306...37,102,729
Ensembl chr25:37,079,756...37,102,700 		JBrowse link
G PDK2 pyruvate dehydrogenase kinase 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 9:26,099,457...26,116,094
Ensembl chr 9:26,100,343...26,115,423 		JBrowse link
G PRDM4 PR/SET domain 4 ISO fetal calf serum RGD PMID:10485890 RGD:633619 NCBI chr10:31,071,998...31,100,008
Ensembl chr10:31,072,297...31,098,636 		JBrowse link
G TNKS tankyrase ISO RGD PMID:25876076 RGD:13628743 NCBI chr16:34,826,248...35,040,004
Ensembl chr16:34,831,662...35,039,946 		JBrowse link
G XBP1 X-box binding protein 1 involved_in ISO (MGI:4442277|PMID:20348926) UniProt PMID:20348926 MGI:4442277 NCBI chr26:22,162,675...22,168,149
Ensembl chr26:22,163,222...22,168,105 		JBrowse link
cellular response to folic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC476816 folate receptor beta involved_in IEA GOC GO_REF:0000108 NCBI chr21:25,917,476...25,923,267 JBrowse link
G LOC609612 folate receptor alpha involved_in IEA GOC GO_REF:0000108 NCBI chr21:25,944,350...25,951,010 JBrowse link
cellular response to L-ascorbic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELN elastin ISO RGD PMID:2859894 RGD:9585689 NCBI chr 6:6,299,524...6,331,425
Ensembl chr 6:6,300,727...6,331,325 		JBrowse link
G LEP leptin ISO RGD PMID:20400526 RGD:5128594 NCBI chr14:8,115,396...8,130,946
Ensembl chr14:8,116,122...8,131,395 		JBrowse link
cellular response to menadione term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCPS decapping enzyme, scavenger involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,168,887...8,212,582
Ensembl chr 5:8,172,313...8,212,832 		JBrowse link
G NDOR1 NADPH dependent diflavin oxidoreductase 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 9:48,456,256...48,464,930
Ensembl chr 9:48,455,260...48,464,970 		JBrowse link
cellular response to methionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:1201245 RGD:6893692 NCBI chr 4:3,219,851...3,328,000
Ensembl chr 4:3,215,090...3,328,115 		JBrowse link
cellular response to vitamin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting helicase 1 ISO RGD PMID:16771696 RGD:2326085 NCBI chr 9:34,804,285...34,984,640
Ensembl chr 9:34,806,535...34,983,788 		JBrowse link
cellular response to vitamin A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LTC4S leukotriene C4 synthase ISO RGD PMID:12767051 RGD:724432 NCBI chr11:1,893,927...1,897,028
Ensembl chr11:1,894,380...1,897,752 		JBrowse link
cellular response to vitamin B1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MDM2 MDM2 proto-oncogene ISO RGD PMID:15656374 RGD:2317394 NCBI chr10:10,936,288...10,963,118
Ensembl chr10:10,893,719...10,962,596 		JBrowse link
cellular response to vitamin B3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT1 sirtuin 1 ISO RGD PMID:23555824 RGD:10047117 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279 		JBrowse link
cellular response to vitamin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO RGD PMID:11108265 RGD:9681746 NCBI chr31:22,169,821...22,178,879
Ensembl chr31:22,170,381...22,178,945 		JBrowse link
G ATP2B1 ATPase plasma membrane Ca2+ transporting 1 ISO RGD PMID:11277270 RGD:2317730 NCBI chr15:30,547,009...30,674,094
Ensembl chr15:30,547,015...30,616,429 		JBrowse link
G BGLAP bone gamma-carboxyglutamate protein ISO RGD PMID:3257212 PMID:6607920 RGD:2316174 RGD:6483560 NCBI chr 7:41,630,092...41,630,976
Ensembl chr 7:41,630,098...41,665,791 		JBrowse link
G CASR calcium sensing receptor ISO 1,25-dihydroxycholecalciferol (calcitriol) RGD PMID:21940515 RGD:7205697 NCBI chr33:25,340,822...25,432,814
Ensembl chr33:25,405,846...25,432,559 		JBrowse link
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 ISO RGD PMID:28104492 RGD:151665513 NCBI chr24:39,861,018...39,878,161
Ensembl chr24:39,862,355...39,878,216 		JBrowse link
G FES FES proto-oncogene, tyrosine kinase involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 3:53,346,975...53,356,547
Ensembl chr 3:53,347,012...53,356,516 		JBrowse link
G FGF23 fibroblast growth factor 23 ISO RGD PMID:23263654 RGD:10044209 NCBI chr27:40,501,655...40,511,785
Ensembl chr27:40,501,731...40,509,766 		JBrowse link
G FZD1 frizzled class receptor 1 ISO RGD PMID:1334084 RGD:61590 NCBI chr14:17,046,911...17,050,515
Ensembl chr14:17,047,382...17,049,337 		JBrowse link
G FZD2 frizzled class receptor 2 ISO RGD PMID:1334084 RGD:61590 NCBI chr 9:18,888,711...18,890,549
Ensembl chr 9:18,888,696...18,890,525 		JBrowse link
G GDAP1 ganglioside induced differentiation associated protein 1 ISO RGD PMID:25449168 RGD:12738378 NCBI chr29:22,805,468...22,835,909
Ensembl chr29:22,804,965...22,833,069 		JBrowse link
G IL15 interleukin 15 ISO RGD PMID:15637289 RGD:2311387 NCBI chr19:1,339,607...1,364,762
Ensembl chr19:1,339,967...1,364,762 		JBrowse link
G ITGB1 integrin subunit beta 1 ISO calcitriol RGD PMID:20304064 RGD:2325261 NCBI chr 2:3,728,472...3,757,696
Ensembl chr 2:3,670,596...3,756,961 		JBrowse link
G KDM6A lysine demethylase 6A ISO RGD PMID:31907922 RGD:151665135 NCBI chr  X:38,745,854...38,964,029
Ensembl chr  X:38,745,854...38,959,842 		JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 ISO RGD PMID:10025676 RGD:10412059 NCBI chr17:26,129,528...26,521,782
Ensembl chr17:26,130,781...26,521,779 		JBrowse link
G MIR125B-1 microRNA mir-125b-1 involved_in ISO (PMID:28389358) ARUK-UCL PMID:28389358 NCBI chr 5:12,097,672...12,097,732
Ensembl chr 5:12,097,658...12,097,745 		JBrowse link
G MIR125B-2 microRNA mir-125b-2 involved_in ISO (PMID:28389358) ARUK-UCL PMID:28389358 NCBI chr31:13,304,980...13,305,040
Ensembl chr31:13,304,964...13,305,052 		JBrowse link
G MMP1 matrix metallopeptidase 1 ISO RGD PMID:22064970 RGD:7207281 NCBI chr 5:28,978,385...28,986,644
Ensembl chr 5:28,978,473...28,986,648 		JBrowse link
G NOS2 nitric oxide synthase 2 ISO RGD PMID:18534083 RGD:4891908 NCBI chr 9:42,171,821...42,210,217
Ensembl chr 9:42,171,821...42,208,588 		JBrowse link
G PDIA3 protein disulfide isomerase family A member 3 ISO RGD PMID:15862831 RGD:9999173 NCBI chr30:10,487,926...10,513,437
Ensembl chr30:10,487,921...10,513,397 		JBrowse link
G PENK proenkephalin ISO RGD PMID:8584038 RGD:10003035 NCBI chr29:7,757,543...7,763,137
Ensembl chr29:7,757,857...7,762,398 		JBrowse link
G PHEX phosphate regulating endopeptidase X-linked ISO RGD PMID:15337762 RGD:11556251 NCBI chr  X:17,830,714...18,038,755
Ensembl chr  X:17,829,158...18,035,775 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:21153232 RGD:9831436 NCBI chr16:11,283,078...11,382,820
Ensembl chr16:11,283,077...11,382,814 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964 		JBrowse link
G TNC tenascin C ISO RGD PMID:10502285 RGD:4889620 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281 		JBrowse link
G TREM1 triggering receptor expressed on myeloid cells 1 ISO RGD PMID:29331667 RGD:127284861 NCBI chr12:9,990,678...10,000,195
Ensembl chr12:9,990,679...10,000,236 		JBrowse link
G VDR vitamin D receptor ISO RGD PMID:9753201 RGD:8158092 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470 		JBrowse link
cellular response to vitamin E term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A1 collagen type I alpha 1 chain ISO RGD PMID:23722449 RGD:8552711 NCBI chr 9:26,183,852...26,199,927
Ensembl chr 9:26,183,852...26,199,927 		JBrowse link
G COL2A1 collagen type II alpha 1 chain ISO RGD PMID:23722449 RGD:8552711 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
G PAWR pro-apoptotic WT1 regulator ISO RGD PMID:10428045 RGD:9835341 NCBI chr15:22,114,014...22,159,287 JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO RGD PMID:11752099 RGD:8553036 NCBI chr20:6,134,618...6,265,481
Ensembl chr20:6,050,357...6,207,981 		JBrowse link
cellular response to vitamin K term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL5 C-C motif chemokine ligand 5 ISO menadione (K3) RGD PMID:19291322 RGD:4889997 NCBI chr 9:37,817,409...37,823,852
Ensembl chr 9:37,817,305...37,823,852 		JBrowse link
G GAS6 growth arrest specific 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:60,975,196...61,005,869
Ensembl chr22:60,974,849...61,005,875 		JBrowse link
G POSTN periostin involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr25:3,167,319...3,208,970
Ensembl chr25:3,167,359...3,208,411 		JBrowse link
negative regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXA2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) BHF-UCL PMID:11875061 MGI:5142372 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072 		JBrowse link
G SIK2 salt inducible kinase 2 involved_in ISO (MGI:5000207|PMID:21084751) MGI PMID:21084751 MGI:5000207 NCBI chr 5:21,354,127...21,479,891
Ensembl chr 5:21,358,902...21,479,841 		JBrowse link
negative regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KANK2 KN motif and ankyrin repeat domains 2 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr20:50,067,749...50,093,377
Ensembl chr20:50,067,760...50,091,320 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr29:1,154,132...1,156,653
Ensembl chr29:1,154,036...1,156,653 		JBrowse link
positive regulation of transcription by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SRF serum response factor ISO RGD PMID:20655308 RGD:5131625 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter by galactose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCOA1 nuclear receptor coactivator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:18,880,676...19,124,300
Ensembl chr17:18,880,383...19,122,258 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXA2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) BHF-UCL PMID:11875061 MGI:5142372 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072 		JBrowse link
G KAT2B lysine acetyltransferase 2B involved_in ISO (MGI:5000207|PMID:21084751) MGI PMID:21084751 MGI:5000207 NCBI chr23:23,166,722...23,242,447
Ensembl chr23:23,168,600...23,233,478 		JBrowse link
G MLX MAX dimerization protein MLX involved_in ISO (MGI:3040568|PMID:14742444) MGI PMID:14742444 MGI:3040568 NCBI chr 9:20,391,762...20,395,792
Ensembl chr 9:20,391,762...20,395,735 		JBrowse link
G MLXIPL MLX interacting protein like involved_in ISO (MGI:5000150|PMID:21471514)
(MGI:3057069|PMID:15496471)
(MGI:3040568|PMID:14742444)		 MGI PMID:14742444 PMID:15496471 PMID:21471514 MGI:3040568 MGI:3057069 MGI:5000150 NCBI chr 6:6,617,398...6,652,201
Ensembl chr 6:6,633,231...6,652,198 		JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase involved_in ISO (MGI:5000150|PMID:21471514) MGI PMID:21471514 MGI:5000150 NCBI chr  X:55,821,227...55,857,597
Ensembl chr  X:55,821,234...55,855,502 		JBrowse link
G USF1 upstream transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:21,412,943...21,419,072
Ensembl chr38:21,413,050...21,418,569 		JBrowse link
G USF2 upstream transcription factor 2, c-fos interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:117,308,882...117,319,397
Ensembl chr 1:117,309,222...117,367,616 		JBrowse link
positive regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:1,825,224...1,830,845
Ensembl chr10:1,826,046...1,829,911 		JBrowse link
G MN1 MN1 proto-oncogene, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:21,216,912...21,261,518
Ensembl chr26:21,216,837...21,261,031 		JBrowse link
G RXRA retinoid X receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:50,525,195...50,575,720
Ensembl chr 9:50,484,567...50,573,119 		JBrowse link
G SNW1 SNW domain containing 1 involved_in ISO (PMID:11514567), (PMID:9632709) UniProt PMID:9632709 PMID:11514567 NCBI chr 8:50,478,924...50,512,360
Ensembl chr 8:50,479,338...50,512,243 		JBrowse link
G VDR vitamin D receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470 		JBrowse link
regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MED1 mediator complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3655015|PMID:16324150) Ensembl
Ensembl
MGI		 PMID:16324150 GO_REF:0000107 MGI:3655015 NCBI chr 9:22,989,257...23,019,350
Ensembl chr 9:22,989,301...23,019,349 		JBrowse link
G SNW1 SNW domain containing 1 involved_in ISO (PMID:14985122) UniProt PMID:14985122 NCBI chr 8:50,478,924...50,512,360
Ensembl chr 8:50,479,338...50,512,243 		JBrowse link
G TRIM24 tripartite motif containing 24 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3776949|PMID:18287084) MGI
Ensembl
Ensembl		 PMID:18287084 GO_REF:0000107 MGI:3776949 NCBI chr16:10,033,993...10,133,450
Ensembl chr16:10,034,390...10,133,435 		JBrowse link
vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIM1 Pim-1 proto-oncogene, serine/threonine kinase involved_in ISO (PMID:22720752) CACAO PMID:22720752 NCBI chr12:6,213,504...6,217,933
Ensembl chr12:6,211,867...6,217,933 		JBrowse link
G VDR vitamin D receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17438
    response to stimulus 9288
      cellular response to stimulus 7836
        cellular response to chemical stimulus 3163
          cellular response to nutrient 73
            carbon catabolite regulation of transcription + 10
            catabolite repression + 0
            cellular response to methionine 1
            cellular response to vitamin + 52
            nitrogen catabolite regulation of transcription + 0
Path 2
Term Annotations click to browse term
  biological_process 17438
    response to stimulus 9288
      response to external stimulus 3084
        response to extracellular stimulus 775
          cellular response to extracellular stimulus 335
            cellular response to nutrient levels 298
              cellular response to nutrient 73
                carbon catabolite regulation of transcription + 10
                catabolite repression + 0
                cellular response to methionine 1
                cellular response to vitamin + 52
                nitrogen catabolite regulation of transcription + 0
paths to the root