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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of lipopolysaccharide-mediated signaling pathway
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Accession:GO:0031664 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of signaling in response to detection of lipopolysaccharide.
Synonyms:exact_synonym: regulation of LPS-mediated signaling pathway;   regulation of lipopolysaccharide-mediated signalling pathway


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regulation of lipopolysaccharide-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd55 CD55 molecule (Cromer blood group) involved_in ISO (PMID:12731067) RGD PMID:12731067 NCBI chr13:47,125,156...47,153,557
Ensembl chr13:47,126,741...47,154,292
JBrowse link
G Cd84 CD84 molecule involved_in ISO (MGI:5700297|PMID:20628063) RGD PMID:20628063 MGI:5700297 NCBI chr13:90,241,369...90,283,625
Ensembl chr13:90,244,681...90,277,865
JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 involved_in ISO
IEA
(PMID:10652441)
GO_REF:0000107
RGD
Ensembl
PMID:10652441 GO_REF:0000107 NCBI chr19:10,644,267...10,654,861
Ensembl chr19:10,644,244...10,653,800
JBrowse link
G Trim5 tripartite motif-containing 5 involved_in ISO (PMID:21512573) RGD PMID:21512573 NCBI chr 1:169,446,774...169,463,760
Ensembl chr 1:169,446,805...169,534,896
JBrowse link
G Tut4 terminal uridylyl transferase 4 acts_upstream_of_or_within ISO (MGI:3624478|PMID:16643855) RGD PMID:16643855 MGI:3624478 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
negative regulation of lipopolysaccharide-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cactin cactin, spliceosome C complex subunit involved_in ISO (PMID:20829348) RGD PMID:20829348 NCBI chr 7:11,258,526...11,266,509
Ensembl chr 7:11,261,201...11,266,630
JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:20345905) RGD PMID:20345905 NCBI chr 8:119,290,416...119,313,261
Ensembl chr 8:119,290,416...119,313,261
JBrowse link
G Nfkbil1 NFKB inhibitor like 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20829348)
UniProt
RGD
PMID:20829348 GO_REF:0000024 NCBI chr20:4,823,590...4,839,202
Ensembl chr20:4,822,935...4,839,202
JBrowse link
G Nlrp1b NLR family, pyrin domain containing 1B involved_in ISO (PMID:11821383) RGD PMID:11821383 NCBI chr10:57,755,957...57,847,867 JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO (MGI:3826899|PMID:18845144) RGD PMID:18845144 MGI:3826899 NCBI chr20:49,464,921...49,556,623
Ensembl chr20:49,464,919...49,556,518
JBrowse link
G Prdx2 peroxiredoxin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2668456 (MGI:3758374|PMID:17325201)
Ensembl
RGD
PMID:17325201 GO_REF:0000107 MGI:3758374 NCBI chr19:26,084,816...26,090,095
Ensembl chr19:26,084,903...26,090,094
JBrowse link
G Trib1 tribbles pseudokinase 1 involved_in ISO (PMID:17452330) RGD PMID:17452330 NCBI chr 7:99,954,492...99,961,026
Ensembl chr 7:99,954,492...99,961,026
JBrowse link
positive regulation of lipopolysaccharide-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp6 bone morphogenetic protein 6 involved_in ISO (MGI:4352622|PMID:19252488) RGD PMID:19252488 MGI:4352622 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Cd180 CD180 molecule involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
UniProtKB:O95711 (PMID:10880523)
MGI:1321404|MGI:96824 (MGI:1860539|PMID:10880523)
RGD PMID:10880523, PMID:21873635 MGI:1860539, RGD:13792537 NCBI chr 2:32,820,275...32,833,223
Ensembl chr 2:32,820,322...32,833,125
JBrowse link
G Ly86 lymphocyte antigen 86 acts_upstream_of_or_within ISO MGI:1194924|MGI:96824 (MGI:1860539|PMID:10880523)
UniProtKB:Q99467 (PMID:10880523)
RGD PMID:10880523 MGI:1860539 NCBI chr17:28,104,535...28,191,447
Ensembl chr17:28,104,589...28,191,436
JBrowse link
G Ly96 lymphocyte antigen 96 acts_upstream_of_or_within ISO MGI:1194924|MGI:96824 (MGI:1860539|PMID:10880523) RGD PMID:10880523 MGI:1860539 NCBI chr 5:1,972,212...1,989,448 JBrowse link
G Mif macrophage migration inhibitory factor involved_in ISO (MGI:2156302|PMID:11756671) RGD PMID:11756671 MGI:2156302 NCBI chr20:13,715,219...13,732,980
Ensembl chr20:13,732,198...13,732,859
JBrowse link
G Prkca protein kinase C, alpha involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:9830023)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:9830023 GO_REF:0000024 GO_REF:0000107 NCBI chr10:96,186,509...96,585,168
Ensembl chr10:96,191,133...96,584,947
JBrowse link
G Sash1 SAM and SH3 domain containing 1 acts_upstream_of_or_within ISO (PMID:23776175) RGD PMID:23776175 NCBI chr 1:2,782,905...2,950,749
Ensembl chr 1:2,782,864...2,846,200
JBrowse link
G Scimp SLP adaptor and CSK interacting membrane protein involved_in ISO (MGI:5913054|PMID:28098138) RGD PMID:28098138 MGI:5913054 NCBI chr10:57,415,429...57,436,412
Ensembl chr10:57,415,832...57,436,368
JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO (MGI:1335941|PMID:10215628) RGD PMID:10215628 MGI:1335941 NCBI chr 3:91,252,829...91,271,607
Ensembl chr 3:91,252,829...91,271,607
JBrowse link
tolerance induction to lipopolysaccharide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acod1 aconitate decarboxylase 1 involved_in ISO (PMID:23609450)
(MGI:5490396|PMID:23609450)
RGD PMID:23609450 MGI:5490396 NCBI chr15:93,612,968...93,622,322
Ensembl chr15:93,612,971...93,622,358
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in ISO (PMID:21220427) RGD PMID:21220427 NCBI chr 1:14,401,103...14,416,369
Ensembl chr 1:14,402,913...14,412,807
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    multi-organism process 1293
      regulation of multi-organism process 61
        regulation of lipopolysaccharide-mediated signaling pathway 23
          negative regulation of lipopolysaccharide-mediated signaling pathway + 9
          positive regulation of lipopolysaccharide-mediated signaling pathway 9
Path 2
Term Annotations click to browse term
  biological_process 19612
    response to stimulus 10435
      response to external stimulus 3186
        response to external biotic stimulus 1696
          response to other organism 1692
            response to bacterium 1043
              response to molecule of bacterial origin 540
                cellular response to molecule of bacterial origin 320
                  cellular response to lipopolysaccharide 309
                    lipopolysaccharide-mediated signaling pathway 57
                      regulation of lipopolysaccharide-mediated signaling pathway 23
                        negative regulation of lipopolysaccharide-mediated signaling pathway + 9
                        positive regulation of lipopolysaccharide-mediated signaling pathway 9
paths to the root