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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of lipopolysaccharide-mediated signaling pathway
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Accession:GO:0031664 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of signaling in response to detection of lipopolysaccharide.
Synonyms:exact_synonym: regulation of LPS-mediated signaling pathway;   regulation of lipopolysaccharide-mediated signalling pathway



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regulation of lipopolysaccharide-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd55 CD55 molecule (Cromer blood group) involved_in ISO (PMID:12731067) RGD PMID:12731067 NCBI chr13:41,857,242...41,885,966
Ensembl chr13:41,857,395...41,885,831
JBrowse link
G Cd84 CD84 molecule involved_in ISO (PMID:20628063) RGD PMID:20628063 NCBI chr13:84,327,580...84,367,153
Ensembl chr13:84,327,553...84,362,076
JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 involved_in ISO
IEA
(PMID:10652441)
GO_REF:0000107
RGD
Ensembl
PMID:10652441 GO_REF:0000107 NCBI chr19:10,227,337...10,237,826
Ensembl chr19:10,227,340...10,236,833
JBrowse link
G Trim5 tripartite motif-containing 5 involved_in ISO (PMID:21512573) RGD PMID:21512573 NCBI chr 1:158,720,407...158,737,393
Ensembl chr 1:158,720,410...158,814,012
JBrowse link
G Tut4 terminal uridylyl transferase 4 acts_upstream_of_or_within ISO (PMID:16643855) RGD PMID:16643855 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465
JBrowse link
negative regulation of lipopolysaccharide-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cactin cactin, spliceosome C complex subunit involved_in ISO (PMID:20829348) RGD PMID:20829348 NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829
JBrowse link
G Defb21 defensin beta 21 involved_in ISO (PMID:33181266) RGD PMID:33181266 NCBI chr 3:141,042,810...141,044,228
Ensembl chr 3:141,042,810...141,044,184
JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:20345905) RGD PMID:20345905 NCBI chr 8:119,878,344...119,901,189
Ensembl chr 8:110,999,948...111,022,795
JBrowse link
G Nfkbil1 NFKB inhibitor like 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20829348)
UniProt
RGD
PMID:20829348 GO_REF:0000024 NCBI chr20:3,589,974...3,608,348
Ensembl chr20:3,590,642...3,605,616
JBrowse link
G Prdx2 peroxiredoxin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2668456 (PMID:17325201)
Ensembl
RGD
PMID:17325201 GO_REF:0000107 NCBI chr19:23,180,927...23,186,217
Ensembl chr19:23,180,930...23,186,194
JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P97797 (PMID:17954568)
Ensembl
RGD
PMID:17954568 GO_REF:0000107 NCBI chr 4:159,212,320...159,237,069
Ensembl chr 4:157,526,035...157,550,984
JBrowse link
G Sirpa signal-regulatory protein alpha involved_in ISO (PMID:17954568) RGD PMID:17954568 NCBI chr 3:116,819,730...116,858,099
Ensembl chr 3:116,819,726...116,858,098
JBrowse link
G Trib1 tribbles pseudokinase 1 involved_in ISO (PMID:17452330) RGD PMID:17452330 NCBI chr 7:93,096,001...93,102,547
Ensembl chr 7:91,206,579...91,214,731
JBrowse link
positive regulation of lipopolysaccharide-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp6 bone morphogenetic protein 6 involved_in ISO (PMID:19252488) RGD PMID:19252488 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Cd14 CD14 molecule involved_in ISS
ISO
GO_REF:0000024
(PMID:24380872)
UniProt
RGD
PMID:24380872 GO_REF:0000024 NCBI chr18:28,335,522...28,337,383
Ensembl chr18:28,335,340...28,337,261
JBrowse link
G Cd180 CD180 molecule acts_upstream_of_or_within
involved_in
ISO
IBA
UniProtKB:O95711 (PMID:10880523)
GO_REF:0000033
MGI:1321404|MGI:96824 (PMID:10880523)
RGD
GO_Central
PMID:10880523 GO_REF:0000033 NCBI chr 2:33,855,940...33,870,046
Ensembl chr 2:33,855,991...33,899,936
JBrowse link
G Ly86 lymphocyte antigen 86 acts_upstream_of_or_within
involved_in
ISO
IBA
UniProtKB:Q99467 (PMID:10880523)
GO_REF:0000033
MGI:1194924|MGI:96824 (PMID:10880523)
RGD
GO_Central
PMID:10880523 GO_REF:0000033 NCBI chr17:27,415,807...27,499,695
Ensembl chr17:27,415,830...27,487,260
JBrowse link
G Ly96 lymphocyte antigen 96 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1194924|MGI:96824 (PMID:10880523)
GO_REF:0000033
RGD
GO_Central
PMID:10880523 GO_REF:0000033 NCBI chr 5:2,582,233...2,612,357
Ensembl chr 5:2,582,254...2,612,386
JBrowse link
G Mif macrophage migration inhibitory factor involved_in ISO (PMID:11756671) RGD PMID:11756671 NCBI chr20:12,767,138...12,791,222
Ensembl chr20:12,790,902...12,799,504
Ensembl chr 4:12,790,902...12,799,504
JBrowse link
G Prkca protein kinase C, alpha involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:9830023)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:9830023 GO_REF:0000024 GO_REF:0000107 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in IEA
ISO
GO_REF:0000107
(PMID:17954568)
Ensembl
RGD
PMID:17954568 GO_REF:0000107 NCBI chr12:41,026,079...41,085,577
Ensembl chr12:35,383,144...35,424,925
JBrowse link
G Sash1 SAM and SH3 domain containing 1 acts_upstream_of_or_within ISO (PMID:23776175) RGD PMID:23776175 NCBI chr 1:4,940,207...5,238,777
Ensembl chr 1:3,121,332...3,439,870
JBrowse link
G Scimp SLP adaptor and CSK interacting membrane protein involved_in ISO (PMID:28098138) RGD PMID:28098138 NCBI chr10:55,507,646...55,527,764
Ensembl chr10:55,507,519...55,528,171
JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in IEA
ISO
GO_REF:0000107
(PMID:10215628)
Ensembl
RGD
PMID:10215628 GO_REF:0000107 NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:87,963,514...87,983,507
JBrowse link
tolerance induction to lipopolysaccharide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acod1 aconitate decarboxylase 1 involved_in ISO (PMID:23609450) RGD PMID:23609450 NCBI chr15:79,871,819...79,881,101
Ensembl chr15:79,871,827...79,880,529
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in ISO (PMID:21220427) RGD PMID:21220427 NCBI chr 1:15,528,921...15,543,993
Ensembl chr 1:13,709,206...13,725,282
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    response to stimulus 11014
      response to biotic stimulus 1924
        regulation of response to biotic stimulus 591
          regulation of lipopolysaccharide-mediated signaling pathway 26
            negative regulation of lipopolysaccharide-mediated signaling pathway + 10
            positive regulation of lipopolysaccharide-mediated signaling pathway 11
Path 2
Term Annotations click to browse term
  biological_process 20536
    response to stimulus 11014
      response to external stimulus 2781
        response to external biotic stimulus 1876
          response to other organism 1872
            response to bacterium 1002
              response to molecule of bacterial origin 577
                cellular response to molecule of bacterial origin 353
                  cellular response to lipopolysaccharide 334
                    lipopolysaccharide-mediated signaling pathway 58
                      regulation of lipopolysaccharide-mediated signaling pathway 26
                        negative regulation of lipopolysaccharide-mediated signaling pathway + 10
                        positive regulation of lipopolysaccharide-mediated signaling pathway 11
paths to the root