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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA integrity checkpoint signaling
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Accession:GO:0031570 term browser browse the term
Definition:A signaling process that controls cell cycle progression in response to changes in DNA structure by monitoring the integrity of the DNA. The DNA integrity checkpoint begins with detection of DNA damage, defects in DNA structure or DNA replication, and progresses through signal transduction and ends with cell cycle effector processes.
Synonyms:exact_synonym: DNA integrity checkpoint;   signal transduction involved in DNA integrity checkpoint
 alt_id: GO:0072401


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DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI		 PMID:12937170 GO_REF:0000107 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207 		JBrowse link
G ATR ATR serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI
TreeGrafter		 PMID:12937170 GO_REF:0000107 GO_REF:0000118 NCBI chr23:38,131,956...38,223,888
Ensembl chr23:38,132,788...38,224,016 		JBrowse link
G ATRIP ATR interacting protein involved_in IEA InterPro GO_REF:0000002 NCBI chr20:40,626,828...40,642,689
Ensembl chr20:40,626,831...40,642,594 		JBrowse link
G CDC5L cell division cycle 5 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:12,779,936...12,822,978
Ensembl chr12:12,780,010...12,822,801 		JBrowse link
G CHEK1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12529385)
(PMID:10859164)		 InterPro
MGI
Ensembl		 PMID:10859164 PMID:12529385 GO_REF:0000002 GO_REF:0000107 NCBI chr 5:8,878,511...8,910,626
Ensembl chr 5:8,879,147...8,907,669 		JBrowse link
G CHEK2 checkpoint kinase 2 ISO RGD PMID:10435585 RGD:633752 NCBI chr26:22,052,256...22,145,675
Ensembl chr26:21,427,961...22,240,624 		JBrowse link
G CLOCK clock circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:47,684,409...47,825,733
Ensembl chr13:47,691,709...47,758,784 		JBrowse link
G CLSPN claspin involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:6,400,084...6,430,295
Ensembl chr15:6,400,062...6,430,279 		JBrowse link
G DONSON DNA replication fork stabilization factor DONSON involved_in IEA Ensembl GO_REF:0000107 NCBI chr31:28,192,338...28,209,512 JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr20:56,805,030...56,868,771
Ensembl chr20:56,803,242...56,852,539 		JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:25,676,686...25,684,270
Ensembl chr33:25,677,076...25,684,175 		JBrowse link
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr30:7,144,727...7,248,014
Ensembl chr30:7,144,570...7,248,000 		JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162 		JBrowse link
G GNB1L G protein subunit beta 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:29,454,954...29,511,019
Ensembl chr26:29,454,054...29,510,792 		JBrowse link
G H2AX H2A.X variant histone involved_in
NOT|acts_upstream_of_or_within		 IEA
ISO		 (PMID:11934988) Ensembl
MGI		 PMID:11934988 GO_REF:0000107 NCBI chr 5:14,765,625...14,766,590
Ensembl chr 5:14,766,126...14,766,557 		JBrowse link
G HINFP histone H4 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:14,731,592...14,742,893
Ensembl chr 5:14,731,588...14,742,559 		JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12529385) InterPro
MGI		 PMID:12529385 GO_REF:0000002 NCBI chr16:93,596...104,908
Ensembl chr16:93,626...125,597 		JBrowse link
G INTS7 integrator complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:10,238,809...10,323,699
Ensembl chr 7:10,239,711...10,323,611 		JBrowse link
G LOC119865601 checkpoint protein HUS1 involved_in IEA InterPro GO_REF:0000002
G LOC119877459 checkpoint protein HUS1 involved_in IEA InterPro GO_REF:0000002
G LYN LYN proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:7,367,617...7,448,862
Ensembl chr29:7,332,684...7,448,507 		JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:17,353,829...17,515,247
Ensembl chr36:17,341,300...17,514,869 		JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI		 PMID:12937170 GO_REF:0000107 NCBI chr12:5,145,647...5,221,558
Ensembl chr12:5,146,037...5,220,603 		JBrowse link
G NBN nibrin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12529385) MGI
Ensembl		 PMID:12529385 GO_REF:0000107 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563 		JBrowse link
G NECAB3 N-terminal EF-hand calcium binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:22,895,149...22,904,689
Ensembl chr24:22,878,402...22,904,656 		JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:25,643,439...25,676,979
Ensembl chr33:25,643,883...25,677,462 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:55,389,902...55,400,241
Ensembl chr18:55,389,897...55,400,240 		JBrowse link
G PTPN11 protein tyrosine phosphatase non-receptor type 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI		 PMID:12937170 GO_REF:0000107 NCBI chr26:9,989,218...10,072,245
Ensembl chr26:9,989,425...10,067,481 		JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:73,372,391...73,393,148
Ensembl chr 4:73,385,566...73,452,033 		JBrowse link
G RAD17 RAD17 checkpoint clamp loader component involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 2:54,407,184...54,437,676
Ensembl chr 2:54,407,228...54,437,632 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A involved_in IEA InterPro GO_REF:0000002 NCBI chr18:50,065,154...50,070,582
Ensembl chr18:50,065,685...50,070,710 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B involved_in IEA InterPro GO_REF:0000002 NCBI chr26:8,309,384...8,333,414
Ensembl chr26:8,309,592...8,343,424 		JBrowse link
G RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr27:41,885,779...41,906,252
Ensembl chr27:41,886,052...41,891,759 		JBrowse link
G STK38 serine/threonine kinase 38 involved_in ISO (PMID:32537488) UniProt PMID:32537488 NCBI chr12:5,594,090...5,636,581
Ensembl chr12:5,595,840...5,636,692 		JBrowse link
G TIPIN TIMELESS interacting protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17141802) Ensembl
MGI		 PMID:17141802 GO_REF:0000107 NCBI chr30:30,641,557...30,657,353
Ensembl chr30:30,641,555...30,657,260 		JBrowse link
G TIPRL TOR signaling pathway regulator involved_in ISO (PMID:17384681) UniProt PMID:17384681 NCBI chr 7:30,291,330...30,329,317
Ensembl chr 7:30,185,850...30,365,512 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:30,517,172...30,578,664
Ensembl chr23:30,516,125...30,578,108 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134 		JBrowse link
G TREX1 three prime repair exonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18045533) Ensembl
MGI		 PMID:18045533 GO_REF:0000107 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906 		JBrowse link
G UFL1 UFM1 specific ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:54,988,200...55,023,414
Ensembl chr12:54,988,264...55,021,626 		JBrowse link
G USP28 ubiquitin specific peptidase 28 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:19,431,313...19,480,709
Ensembl chr 5:19,435,451...19,479,640 		JBrowse link
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASP2 caspase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:6,378,447...6,396,251
Ensembl chr16:6,379,913...6,396,646 		JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A involved_in ISO (PMID:15149599) BHF-UCL PMID:15149599 NCBI chr12:5,746,898...5,755,103
Ensembl chr12:5,745,852...5,892,281 		JBrowse link
G CRADD CASP2 and RIPK1 domain containing adaptor with death domain involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:33,873,600...34,052,498
Ensembl chr15:33,878,467...34,092,094 		JBrowse link
G E2F7 E2F transcription factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,856,093...19,895,657
Ensembl chr15:19,857,227...19,895,225 		JBrowse link
G MDM2 MDM2 proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:10,936,288...10,963,118
Ensembl chr10:10,893,719...10,962,596 		JBrowse link
G MUC1 mucin 1, cell surface associated involved_in ISO (PMID:15710329) BHF-UCL PMID:15710329 NCBI chr 7:42,338,939...42,344,690
Ensembl chr 7:42,340,375...42,344,690 		JBrowse link
G PCBP4 poly(rC) binding protein 4 involved_in ISO (PMID:10891498) UniProt PMID:10891498 NCBI chr20:37,748,854...37,759,072
Ensembl chr20:37,748,938...37,759,073 		JBrowse link
G PIDD1 p53-induced death domain protein 1 involved_in ISO (PMID:21726810) UniProt PMID:21726810 NCBI chr18:45,168,244...45,174,085
Ensembl chr18:45,168,245...45,173,107 		JBrowse link
G PML PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:37,232,337...37,278,434
Ensembl chr30:37,232,306...37,277,741 		JBrowse link
G PPP2R5C protein phosphatase 2 regulatory subunit B'gamma involved_in ISO (PMID:17245430) UniProt PMID:17245430 NCBI chr 8:69,846,311...69,969,409
Ensembl chr 8:69,846,446...69,967,578 		JBrowse link
G PRAP1 proline rich acidic protein 1 involved_in ISO (PMID:23235459) UniProt PMID:23235459 NCBI chr28:40,927,744...40,931,355 JBrowse link
G RBM38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) UniProt PMID:17050675 NCBI chr24:42,396,356...42,410,543
Ensembl chr24:42,396,352...42,409,240 		JBrowse link
G RPL26 ribosomal protein L26 involved_in ISO (PMID:16213212)
(MGI:5882892|PMID:16213212)		 CAFA PMID:16213212 MGI:5882892 NCBI chr 5:33,152,114...33,158,237
Ensembl chr 5:33,152,113...33,158,302 		JBrowse link
G SLC35E3 solute carrier family 35 member E3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:10,892,999...10,908,142 JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107883) Ensembl
MGI		 PMID:16107883 GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109 		JBrowse link
DNA replication checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:64,566,035...64,570,361
Ensembl chr 5:64,566,043...64,570,748 		JBrowse link
G CLSPN claspin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12766152)
(PMID:16123041)		 MGI
Ensembl
UniProt		 PMID:12766152 PMID:16123041 GO_REF:0000107 NCBI chr15:6,400,084...6,430,295
Ensembl chr15:6,400,062...6,430,279 		JBrowse link
G DNA2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:19,626,001...19,683,819
Ensembl chr 4:19,626,977...19,684,660 		JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:496,353...509,812
Ensembl chr12:496,878...507,442 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:50,065,154...50,070,582
Ensembl chr18:50,065,685...50,070,710 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:8,309,384...8,333,414
Ensembl chr26:8,309,592...8,343,424 		JBrowse link
G TIMELESS timeless circadian regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:671,829...701,152
Ensembl chr10:671,269...687,016 		JBrowse link
G TIPIN TIMELESS interacting protein involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr30:30,641,557...30,657,353
Ensembl chr30:30,641,555...30,657,260 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:30,517,172...30,578,664
Ensembl chr23:30,516,125...30,578,108 		JBrowse link
meiotic DNA integrity checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HUS1 HUS1 checkpoint clamp component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:93,596...104,908
Ensembl chr16:93,626...125,597 		JBrowse link
G LOC119865601 checkpoint protein HUS1 involved_in IEA TreeGrafter GO_REF:0000118
G LOC119877459 checkpoint protein HUS1 involved_in IEA TreeGrafter GO_REF:0000118
mitotic DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC7 cell division cycle 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:57,336,165...57,362,478
Ensembl chr 6:57,337,407...57,362,757 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:22,052,256...22,145,675
Ensembl chr26:21,427,961...22,240,624 		JBrowse link
G ZNF830 zinc finger protein 830 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23213458) Ensembl
MGI
TreeGrafter		 PMID:23213458 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:38,382,508...38,384,060
Ensembl chr 9:38,382,900...38,384,015 		JBrowse link
mitotic DNA integrity checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SETMAR SET domain without mariner transposase fusion involved_in ISO (PMID:18790802) UniProt PMID:18790802 NCBI chr20:13,214,241...13,224,020
Ensembl chr20:13,214,241...13,224,020 		JBrowse link
mitotic DNA replication checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC6 cell division cycle 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:22,303,549...22,317,046
Ensembl chr 9:22,226,719...22,316,963 		JBrowse link
G CLSPN claspin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:6,400,084...6,430,295
Ensembl chr15:6,400,062...6,430,279 		JBrowse link
G DONSON DNA replication fork stabilization factor DONSON involved_in IEA Ensembl GO_REF:0000107 NCBI chr31:28,192,338...28,209,512 JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:93,596...104,908
Ensembl chr16:93,626...125,597 		JBrowse link
G LOC119865601 checkpoint protein HUS1 involved_in IEA TreeGrafter GO_REF:0000118
G LOC119877459 checkpoint protein HUS1 involved_in IEA TreeGrafter GO_REF:0000118
G NAE1 NEDD8 activating enzyme E1 subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:82,462,690...82,486,097
Ensembl chr 5:82,462,744...82,486,100 		JBrowse link
G ORC1 origin recognition complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:8,965,339...8,995,527
Ensembl chr15:8,971,732...8,995,481 		JBrowse link
G RAD17 RAD17 checkpoint clamp loader component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:54,407,184...54,437,676
Ensembl chr 2:54,407,228...54,437,632 		JBrowse link
G TICRR TOPBP1 interacting checkpoint and replication regulator involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 3:52,584,913...52,629,731
Ensembl chr 3:52,584,454...52,629,164 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:30,517,172...30,578,664
Ensembl chr23:30,516,125...30,578,108 		JBrowse link
G ZNF830 zinc finger protein 830 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:38,382,508...38,384,060
Ensembl chr 9:38,382,900...38,384,015 		JBrowse link
mitotic G1 DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCND1 cyclin D1 involved_in ISS UniProt GO_REF:0000024 NCBI chr18:48,501,905...48,509,684
Ensembl chr18:48,501,899...48,516,005 		JBrowse link
G DGKZ diacylglycerol kinase zeta involved_in ISO (PMID:16286473) UniProt PMID:16286473 NCBI chr18:43,088,169...43,103,820
Ensembl chr18:43,088,525...43,129,294 		JBrowse link
G FBXO31 F-box protein 31 involved_in ISO (PMID:19412162) UniProt PMID:19412162 NCBI chr 5:65,703,591...65,734,956
Ensembl chr 5:65,703,575...65,731,056 		JBrowse link
G GIGYF2 GRB10 interacting GYF protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19744960) Ensembl
MGI		 PMID:19744960 GO_REF:0000107 NCBI chr25:44,317,540...44,453,761
Ensembl chr25:44,317,517...44,452,064 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895 		JBrowse link
G RFWD3 ring finger and WD repeat domain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:75,960,909...76,001,088
Ensembl chr 5:75,960,955...76,000,467 		JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227 		JBrowse link
G RPS27L ribosomal protein S27 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:27,749,297...27,753,226 JBrowse link
G SDE2 SDE2 telomere maintenance homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:38,857,220...38,871,584
Ensembl chr 7:38,857,234...38,870,157 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107883) Ensembl
MGI		 PMID:16107883 GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109 		JBrowse link
G TREX1 three prime repair exonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18045533)
(PMID:23993650)		 Ensembl
MGI		 PMID:18045533 PMID:23993650 GO_REF:0000107 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906 		JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in ISO (PMID:21329877) UniProt PMID:21329877 NCBI chr 2:17,504,949...17,588,037 JBrowse link
mitotic G2 DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:7,298,789...7,316,665
Ensembl chr32:7,298,790...7,317,001 		JBrowse link
G ATM ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207 		JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:45,466,808...45,474,953
Ensembl chr20:45,466,805...45,473,009 		JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr17:21,886,127...22,288,513
Ensembl chr17:21,889,862...22,288,504 		JBrowse link
G BLM BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146 		JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494 		JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA UniProt GO_REF:0000104 NCBI chr  X:123,081,262...123,143,509
Ensembl chr  X:123,081,050...123,140,133 		JBrowse link
G BRSK1 BR serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:102,367,050...102,384,942
Ensembl chr 1:102,367,581...102,385,466 		JBrowse link
G C28H10orf90 chromosome 28 C10orf90 homolog involved_in ISO (MGI:4455105|PMID:20154723) UniProt PMID:20154723 MGI:4455105 NCBI chr28:35,514,489...35,721,091
Ensembl chr28:35,515,286...35,720,509 		JBrowse link
G CCNG1 cyclin G1 ISO RGD PMID:9464250 RGD:2316029 NCBI chr 4:47,800,697...47,808,259
Ensembl chr 4:47,801,575...47,808,211 		JBrowse link
G CDC14B cell division cycle 14B involved_in ISO (PMID:18662541) UniProt PMID:18662541 NCBI chr 1:70,232,932...70,335,950
Ensembl chr 1:70,232,947...70,335,943 		JBrowse link
G CDK1 cyclin dependent kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI
TreeGrafter		 PMID:12937170 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:12,884,106...12,899,203
Ensembl chr 4:12,883,385...12,899,197 		JBrowse link
G CDK5RAP3 CDK5 regulatory subunit associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:24,276,660...24,286,273
Ensembl chr 9:24,276,768...24,286,272 		JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A involved_in ISO (PMID:23213251) UniProt PMID:23213251 NCBI chr12:5,746,898...5,755,103
Ensembl chr12:5,745,852...5,892,281 		JBrowse link
G CHEK1 checkpoint kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,878,511...8,910,626
Ensembl chr 5:8,879,147...8,907,669 		JBrowse link
G CLSPN claspin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:6,400,084...6,430,295
Ensembl chr15:6,400,062...6,430,279 		JBrowse link
G CREB3L1 cAMP responsive element binding protein 3 like 1 involved_in ISO (PMID:37178686) UniProt PMID:37178686 NCBI chr18:43,138,779...43,173,535
Ensembl chr18:43,139,453...43,173,420 		JBrowse link
G DONSON DNA replication fork stabilization factor DONSON involved_in IEA Ensembl GO_REF:0000107 NCBI chr31:28,192,338...28,209,512 JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:10,323,842...10,368,529
Ensembl chr 7:10,323,559...10,369,560 		JBrowse link
G FOXN3 forkhead box N3 involved_in ISO (PMID:9154802) UniProt PMID:9154802 NCBI chr 8:60,324,808...60,612,959
Ensembl chr34:12,398,370...12,399,773 		JBrowse link
G FOXO4 forkhead box O4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12048180) Ensembl
MGI		 PMID:12048180 GO_REF:0000107 NCBI chr  X:55,469,738...55,477,699
Ensembl chr  X:55,469,382...55,477,699 		JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:55,866,893...55,877,077
Ensembl chr20:55,869,693...55,876,936 		JBrowse link
G IER3 immediate early response 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20467439) Ensembl
MGI		 PMID:20467439 GO_REF:0000107 NCBI chr12:529,002...530,328
Ensembl chr12:529,339...530,232 		JBrowse link
G LOC478184 pre-mRNA-splicing factor SYF2 acts_upstream_of_or_within ISO (PMID:22448250) MGI PMID:22448250 NCBI chr 2:74,573,023...74,580,061 JBrowse link
G LOC610150 lys-63-specific deubiquitinase BRCC36-like involved_in IEA UniProt GO_REF:0000104 NCBI chr32:24,754,628...24,755,868 JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase acts_upstream_of_or_within ISO (PMID:14614141) MGI PMID:14614141 NCBI chr20:5,716,162...5,725,068
Ensembl chr20:5,716,239...5,724,881 		JBrowse link
G MBTPS1 membrane bound transcription factor peptidase, site 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:68,228,176...68,281,175
Ensembl chr 5:68,228,238...68,280,515 		JBrowse link
G MBTPS2 membrane bound transcription factor peptidase, site 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:17,655,295...17,718,960
Ensembl chr  X:17,655,363...17,710,288 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14690604) Ensembl
MGI
TreeGrafter		 PMID:14690604 GO_REF:0000107 GO_REF:0000118 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119 		JBrowse link
G MRNIP MRN complex interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:1,834,148...1,859,601
Ensembl chr11:1,833,967...1,859,347 		JBrowse link
G NBN nibrin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18614044) InterPro
MGI
TreeGrafter
Ensembl		 PMID:18614044 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:108,307,039...108,315,732
Ensembl chr 1:108,307,042...108,316,495 		JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:22,165,338...22,176,847
Ensembl chr 6:22,165,338...22,176,441 		JBrowse link
G RINT1 RAD50 interactor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:14,843,820...14,877,334
Ensembl chr18:14,843,829...14,877,607 		JBrowse link
G TAOK1 TAO kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:43,501,752...43,660,077
Ensembl chr 9:43,559,708...43,651,377 		JBrowse link
G TAOK2 TAO kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:18,014,685...18,029,188
Ensembl chr 6:18,000,138...18,029,185 		JBrowse link
G TAOK3 TAO kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:14,534,083...14,712,779
Ensembl chr26:14,534,901...14,631,899 		JBrowse link
G TICRR TOPBP1 interacting checkpoint and replication regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:52,584,913...52,629,731
Ensembl chr 3:52,584,454...52,629,164 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:30,517,172...30,578,664
Ensembl chr23:30,516,125...30,578,108 		JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:36,339,711...36,467,035
Ensembl chr 4:36,354,922...36,466,880 		JBrowse link
mitotic intra-S DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:19,032,376...19,103,382
Ensembl chr36:19,010,717...19,103,292 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:22,052,256...22,145,675
Ensembl chr26:21,427,961...22,240,624 		JBrowse link
G EME1 essential meiotic structure-specific endonuclease 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:26,342,419...26,350,561
Ensembl chr 9:26,344,438...26,349,997 		JBrowse link
G FANCD2 FA complementation group D2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:8,240,270...8,297,269
Ensembl chr20:8,240,311...8,297,568 		JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:93,596...104,908
Ensembl chr16:93,626...125,597 		JBrowse link
G LOC119865601 checkpoint protein HUS1 involved_in IEA TreeGrafter GO_REF:0000118
G LOC119877459 checkpoint protein HUS1 involved_in IEA TreeGrafter GO_REF:0000118
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14690604), (PMID:18614044) Ensembl
MGI
TreeGrafter		 PMID:14690604 PMID:18614044 GO_REF:0000107 GO_REF:0000118 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119 		JBrowse link
G MSH2 mutS homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15533840) Ensembl
MGI		 PMID:15533840 GO_REF:0000107 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210 		JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:51,396,980...51,404,563
Ensembl chr18:51,396,980...51,402,534 		JBrowse link
G NEK11 NIMA related kinase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:28,244,116...28,496,595
Ensembl chr23:28,247,451...28,442,816 		JBrowse link
G RAD17 RAD17 checkpoint clamp loader component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:54,407,184...54,437,676
Ensembl chr 2:54,407,228...54,437,632 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9766521) Ensembl
MGI
TreeGrafter		 PMID:9766521 GO_REF:0000107 GO_REF:0000118 NCBI chr18:50,065,154...50,070,582
Ensembl chr18:50,065,685...50,070,710 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:8,309,384...8,333,414
Ensembl chr26:8,309,592...8,343,424 		JBrowse link
G TIPIN TIMELESS interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:30,641,557...30,657,353
Ensembl chr30:30,641,555...30,657,260 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15533840) Ensembl
MGI		 PMID:15533840 GO_REF:0000107 NCBI chr20:4,299,644...4,328,826
Ensembl chr20:4,300,386...4,328,768 		JBrowse link
negative regulation of DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRD4 bromodomain containing 4 involved_in ISO (PMID:23728299) UniProt PMID:23728299 NCBI chr20:46,844,795...46,927,620
Ensembl chr20:46,891,514...46,927,608 		JBrowse link
G CHEK2 checkpoint kinase 2 ISO RGD PMID:20637979 RGD:10401658 NCBI chr26:22,052,256...22,145,675
Ensembl chr26:21,427,961...22,240,624 		JBrowse link
negative regulation of mitotic DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP1R10 protein phosphatase 1 regulatory subunit 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:416,533...434,777
Ensembl chr12:417,680...427,799 		JBrowse link
positive regulation of DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCAR2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:34,660,026...34,674,129
Ensembl chr25:34,660,553...34,674,037 		JBrowse link
G TTI1 TELO2 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:26,505,913...26,552,418
Ensembl chr24:26,506,498...26,535,725 		JBrowse link
positive regulation of mitotic DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:17,353,829...17,515,247
Ensembl chr36:17,341,300...17,514,869 		JBrowse link
regulation of DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRY1 cryptochrome circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:31,681,098...31,792,995
Ensembl chr10:31,681,288...31,780,306 		JBrowse link
G CUL4A cullin 4A acts_upstream_of_or_within ISO (PMID:19481525) MGI PMID:19481525 NCBI chr22:60,624,215...60,667,844
Ensembl chr22:60,624,241...60,666,616 		JBrowse link
G ETAA1 ETAA1 activator of ATR kinase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:66,631,411...66,644,753
Ensembl chr10:66,631,544...66,643,728 		JBrowse link
G FBXO4 F-box protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21911473) Ensembl
MGI		 PMID:21911473 GO_REF:0000107 NCBI chr 4:67,620,947...67,664,862
Ensembl chr 4:67,651,275...67,664,915 		JBrowse link
G FEM1B fem-1 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:32,297,847...32,315,823
Ensembl chr30:32,297,400...32,311,008 		JBrowse link
G NEK1 NIMA related kinase 1 involved_in ISO (MGI:5619475|PMID:18843199) CACAO PMID:18843199 MGI:5619475 NCBI chr25:20,297,190...20,528,537
Ensembl chr25:20,299,079...20,518,483 		JBrowse link
G RFWD3 ring finger and WD repeat domain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:75,960,909...76,001,088
Ensembl chr 5:75,960,955...76,000,467 		JBrowse link
G RNASEH2B ribonuclease H2 subunit B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22802351) Ensembl
MGI		 PMID:22802351 GO_REF:0000107 NCBI chr22:944,399...1,010,479
Ensembl chr22:931,751...991,223 		JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227 		JBrowse link
G WDR76 WD repeat domain 76 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr30:10,559,427...10,611,602
Ensembl chr30:10,561,515...10,609,907 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    cellular process 16926
      signal transduction 6326
        intracellular signal transduction 2757
          cell cycle checkpoint signaling 186
            DNA integrity checkpoint signaling 128
              DNA damage checkpoint signaling + 120
              DNA replication checkpoint signaling + 19
              meiotic DNA integrity checkpoint signaling + 3
              mitotic DNA integrity checkpoint signaling + 88
Path 2
Term Annotations click to browse term
  biological_process 17917
    biological regulation 12438
      regulation of biological process 12078
        negative regulation of biological process 5778
          negative regulation of cellular process 5391
            negative regulation of cell cycle 396
              negative regulation of cell cycle process 320
                negative regulation of cell cycle phase transition 271
                  cell cycle checkpoint signaling 186
                    DNA integrity checkpoint signaling 128
                      DNA damage checkpoint signaling + 120
                      DNA replication checkpoint signaling + 19
                      meiotic DNA integrity checkpoint signaling + 3
                      mitotic DNA integrity checkpoint signaling + 88
paths to the root