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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin assembly
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Accession:GO:0031497 term browser browse the term
Definition:The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus.
Synonyms:exact_synonym: establishment of chromatin architecture
 broad_synonym: chromatin maintenance

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chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 codanin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:5,988,215...6,001,446 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,536,141...2,564,897 JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:6,262,207...6,288,833 JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chrNW_004936472:25,236,728...25,246,585 JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:2,087,123...2,098,153 JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,592,226...15,611,381 JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:6,273,740...6,432,127 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
G Tp53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367 JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965675 integrin subunit beta 3 binding protein involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936692:1,040,894...1,091,741 JBrowse link
G LOC101970143 centromere protein P involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936487:1,977,595...2,199,276 JBrowse link
G LOC101970166 Holliday junction recognition protein involved_in ISO (PMID:19410544), (PMID:19410545) UniProt PMID:19410544 PMID:19410545 NCBI chrNW_004936525:3,528,379...3,544,088 JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5438906|PMID:22516971) MGI
Ensembl		 PMID:22516971 GO_REF:0000107 MGI:5438906 NCBI chrNW_004936500:9,822,366...9,832,732 JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3611125|PMID:16322236)
(MGI:3768461|PMID:17938196)		 MGI
Ensembl		 PMID:16322236 PMID:17938196 GO_REF:0000107 MGI:3611125 MGI:3768461 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Hdac1 histone deacetylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,320,635...15,351,418 JBrowse link
G Hells helicase, lymphoid specific involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:626,354...662,477 JBrowse link
G Kmt2b lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chrNW_004936570:583,616...605,846 JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:9,512,350...9,619,250 JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3611125|PMID:16322236) MGI
Ensembl		 PMID:16322236 GO_REF:0000107 MGI:3611125 NCBI chrNW_004936588:865,046...873,821 JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chrNW_004936659:1,152,846...1,246,718 JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936658:1,699,150...1,713,079 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:2,772,310...2,782,687 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,536,141...2,564,897 JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936500:6,262,207...6,288,833 JBrowse link
G Hat1 histone acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:2,105,866...2,153,089 JBrowse link
G Ipo4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:359,741...370,514 JBrowse link
G LOC101954283 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:3,181,580...3,182,312 JBrowse link
G LOC101956307 histone H3 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:3,131,668...3,132,428 JBrowse link
G LOC101957180 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:3,139,838...3,140,223 JBrowse link
G LOC101966143 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936580:173,731...175,254 JBrowse link
G LOC101967236 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:2,803,784...2,804,173 JBrowse link
G LOC101971079 nuclear autoantigenic sperm protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3694318|PMID:16728391) UniProt
Ensembl		 PMID:16728391 GO_REF:0000107 MGI:3694318 NCBI chrNW_004936474:26,710,364...26,743,336 JBrowse link
G LOC101972420 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:2,019,007...2,019,428 JBrowse link
G LOC101972801 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:1,953,045...1,953,612 JBrowse link
G LOC101974797 histone H3.1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:1,881,645...1,882,070 JBrowse link
G LOC101978127 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936587:2,702,038...2,704,472 JBrowse link
G LOC106145261 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:1,888,128...1,888,666 JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,592,226...15,611,381 JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936658:1,699,150...1,713,079 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:2,772,310...2,782,687 JBrowse link
G Atrx ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,496,307...2,718,539 JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936619:890,474...1,030,914 JBrowse link
G Hat1 histone acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:2,105,866...2,153,089 JBrowse link
G Ipo4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:359,741...370,514 JBrowse link
G LOC101957075 protein HIRA involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:3,282,170...3,380,151 JBrowse link
G LOC101957180 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:3,139,838...3,140,223 JBrowse link
G LOC101963041 histone H3.3A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936594:959,493...961,703 JBrowse link
G LOC101966143 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936580:173,731...175,254 JBrowse link
G LOC101967236 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:2,803,784...2,804,173 JBrowse link
G LOC101971079 nuclear autoantigenic sperm protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,710,364...26,743,336 JBrowse link
G LOC101972420 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:2,019,007...2,019,428 JBrowse link
G LOC101972801 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:1,953,045...1,953,612 JBrowse link
G LOC101974797 histone H3.1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:1,881,645...1,882,070 JBrowse link
G LOC101978127 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936587:2,702,038...2,704,472 JBrowse link
G LOC106145261 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004936671:1,888,128...1,888,666 JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,592,226...15,611,381 JBrowse link
G Ubn1 ubinuclein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:4,795,974...4,826,217 JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2652932|PMID:12601169) MGI
Ensembl		 PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chrNW_004936501:599,963...633,837 JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chrNW_004936794:1,023,891...1,025,470 JBrowse link
G Ctcf CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,987,137...18,031,733 JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3663953|PMID:16920095) MGI
Ensembl		 PMID:16920095 GO_REF:0000107 MGI:3663953 NCBI chrNW_004936500:143,078...160,318 JBrowse link
G LOC101971027 neuroendocrine secretory protein 55 acts_upstream_of_or_within ISO (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chrNW_004936530:1,353,432...1,407,437 JBrowse link
G LOC101978402 agouti signaling protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2652932|PMID:12601169) Ensembl
MGI		 PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chrNW_004936561:6,341,667...6,346,440 JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1345919|PMID:10508517) MGI
Ensembl		 PMID:10508517 GO_REF:0000107 MGI:1345919 NCBI chrNW_004936805:849,218...850,894 JBrowse link
G Zdbf2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chrNW_004936631:2,649,792...2,686,430 JBrowse link
G Zfp57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chrNW_004936723:1,063,969...1,069,986 JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bahd1 bromo adjacent homology domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:3,902,558...3,927,746 JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:4462332|PMID:20168299)
(MGI:3653583|PMID:16678107)		 MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chrNW_004936646:914,944...949,057 JBrowse link
G Cbx3 chromobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:2,981,218...2,989,329 JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:22,032,712...22,055,160 JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936588:1,288,447...1,332,489 JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:3820717 NCBI chrNW_004936490:17,430,383...17,465,889 JBrowse link
G Hells helicase, lymphoid specific acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3510059|PMID:15448183) MGI
Ensembl		 PMID:15448183 GO_REF:0000107 MGI:3510059 NCBI chrNW_004936601:626,354...662,477 JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289 JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:19158276) GO_Central PMID:19158276 NCBI chrNW_004936472:25,236,728...25,246,585 JBrowse link
G Kmt2d lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chrNW_004936512:6,819,240...6,860,852 JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chrNW_004936530:3,038,873...3,069,724 JBrowse link
G LOC101970440 histone H1.0 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:3,314,991...3,315,974 JBrowse link
G Mecp2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3530434|PMID:15608638) MGI
Ensembl		 PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:2,139,201...2,183,850 JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:1,596,227...1,746,706 JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:667,453...689,291 JBrowse link
G Tnp1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:504,864...505,447 JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:17,178,981...17,322,600 JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,686,070...1,838,315 JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936870:25,039...34,601 JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004939393:628...6,234 JBrowse link
G LOC101960775 cell division cycle and apoptosis regulator protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:9,573,918...9,624,469 JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:2,912,114...2,956,429 JBrowse link
G Phf8 PHD finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936751:850,630...935,382 JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:6,735,047...6,757,874 JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11897662) MGI
Ensembl		 PMID:11897662 GO_REF:0000107 NCBI chrNW_004936658:1,699,150...1,713,079 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2675150|PMID:12842904) MGI
Ensembl		 PMID:12842904 GO_REF:0000107 MGI:2675150 NCBI chrNW_004936659:2,772,310...2,782,687 JBrowse link
G Atrx ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,496,307...2,718,539 JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936494:8,968,704...9,080,620 JBrowse link
G Brd2 bromodomain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:25,807,179...25,818,914 JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:10,693,601...10,698,139 JBrowse link
G Daxx death domain associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:25,546,091...25,550,390 JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:5,788,312...5,795,199 JBrowse link
G Grwd1 glutamate rich WD repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,548,178...2,555,234 JBrowse link
G H1-1 H1.1 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936671:1,876,497...1,878,006 JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936671:1,907,356...1,911,821 JBrowse link
G H1-5 H1.5 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936671:3,163,792...3,164,532 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936671:1,954,740...1,956,298 JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004936472:25,236,728...25,246,585 JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936516:4,536,664...4,539,331 JBrowse link
G Hp1bp3 heterochromatin protein 1 binding protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936474:6,665,989...6,699,722 JBrowse link
G Kat6a lysine acetyltransferase 6A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936785:602,754...704,504 JBrowse link
G LOC101954283 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:3,181,580...3,182,312 JBrowse link
G LOC101956307 histone H3 involved_in ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)		 UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004936671:3,131,668...3,132,428 JBrowse link
G LOC101956559 core histone macro-H2A.2 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936521:8,474,408...8,509,269 JBrowse link
G LOC101957180 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004936671:3,139,838...3,140,223 JBrowse link
G LOC101959491 putative testis-specific Y-encoded-like protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936485:19,092,531...19,095,884 JBrowse link
G LOC101961517 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937135:30,302...30,865 JBrowse link
G LOC101963041 histone H3.3A involved_in ISO (PMID:21636898)
(PMID:25615412)		 UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3A involved_in ISO (PMID:21636898)
(PMID:25615412)		 UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004936594:959,493...961,703 JBrowse link
G LOC101964352 protein SET-like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936750:275,064...275,937 JBrowse link
G LOC101966143 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004936580:173,731...175,254 JBrowse link
G LOC101967165 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chrNW_004936927:232,353...232,857 JBrowse link
G LOC101967236 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004936671:2,803,784...2,804,173 JBrowse link
G LOC101967299 histone H3 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004936580:202,146...204,499 JBrowse link
G LOC101970440 histone H1.0 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936492:3,314,991...3,315,974 JBrowse link
G LOC101970778 histone H2B type 1-A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3702345|PMID:17261847) MGI
Ensembl		 PMID:17261847 GO_REF:0000107 MGI:3702345 NCBI chrNW_004936671:1,716,773...1,719,319 JBrowse link
G LOC101971079 nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) UniProt PMID:25615412 NCBI chrNW_004936474:26,710,364...26,743,336 JBrowse link
G LOC101971629 core histone macro-H2A.1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
G LOC101972420 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004936671:2,019,007...2,019,428 JBrowse link
G LOC101972801 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004936671:1,953,045...1,953,612 JBrowse link
G LOC101974797 histone H3.1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004936671:1,881,645...1,882,070 JBrowse link
G LOC101978127 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004936587:2,702,038...2,704,472 JBrowse link
G LOC106145261 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004936671:1,888,128...1,888,666 JBrowse link
G LOC110597796 spermatid-specific linker histone H1-like protein involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936490:11,468,440...11,477,199 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2156014|PMID:10531422) MGI
Ensembl		 PMID:10531422 GO_REF:0000107 MGI:2156014 NCBI chrNW_004936798:756,350...768,600 JBrowse link
G Naa60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:818,386...838,258 JBrowse link
G Nap1l1 nucleosome assembly protein 1 like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936568:4,416,225...4,440,566 JBrowse link
G Nap1l2 nucleosome assembly protein 1 like 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936683:125,645...128,213 JBrowse link
G Nap1l3 nucleosome assembly protein 1 like 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936649:274,677...277,545 JBrowse link
G Nap1l4 nucleosome assembly protein 1 like 4 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936794:1,074,126...1,106,613 JBrowse link
G Nap1l5 nucleosome assembly protein 1 like 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936685:1,142,051...1,143,536 JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) UniProt PMID:11602260 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:4,219,183...4,239,551 JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chrNW_004936559:220,941...222,783 JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:6,273,740...6,432,127 JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:450,919...490,938 JBrowse link
G Set SET nuclear proto-oncogene involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936487:16,181,764...16,184,706 JBrowse link
G Shprh SNF2 histone linker PHD RING helicase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936625:533,870...617,936 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5500979|PMID:23752591) MGI
Ensembl		 PMID:23752591 GO_REF:0000107 MGI:5500979 NCBI chrNW_004936526:4,536,157...5,218,883 JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:667,453...689,291 JBrowse link
G Tspyl1 TSPY like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936824:857,696...860,604 JBrowse link
G Tspyl2 TSPY like 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936751:85,104...91,596 JBrowse link
G Tspyl4 TSPY like 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936824:842,698...846,653 JBrowse link
G Tspyl5 TSPY like 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936470:45,385,155...45,410,307 JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936821:267,137...276,969 JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chrNW_004936846:528,768...584,599 JBrowse link
G Hells helicase, lymphoid specific involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:626,354...662,477 JBrowse link
G LOC101963041 histone H3.3A acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5694896|PMID:26159997) MGI
Ensembl		 PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chrNW_004936594:959,493...961,703 JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066 JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G LOC101978700 activating transcription factor 7 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936587:2,922,855...3,026,773 JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936755:133,315...171,507 JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936720:1,972,063...2,025,283 JBrowse link
G Pphln1 periphilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,001,733...1,158,647 JBrowse link
G Resf1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chrNW_004936607:4,247,824...4,274,410 JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (PMID:24623306), (PMID:27732843)
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)		 UniProt PMID:20164836 PMID:24623306 PMID:27732843 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chrNW_004936580:1,146,286...1,192,842 JBrowse link
G Tasor transcription activation suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:7,053,797...7,098,608 JBrowse link
G Trim28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937062:126,832...132,938 JBrowse link
G Znf304 zinc finger protein 304 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936897:244,051...253,580 JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:379,849...385,648 JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:34,206,084...34,260,538 JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:4,050,693...4,111,682 JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within
involved_in		 ISO (MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)		 MGI
UniProt		 PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chrNW_004936646:914,944...949,057 JBrowse link
G Bend3 BEN domain containing 3 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936564:3,495,020...3,513,684 JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:656,508...661,894 JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:646,778...661,144 JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chrNW_004936541:671,178...687,485 JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) UniProt PMID:26109053 NCBI chrNW_004936528:667,453...689,291 JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine demethylase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:8,262,913...8,319,089 JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936790:1,210,842...1,298,577 JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Samd1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chrNW_004936659:2,744,967...2,750,135 JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5528755|PMID:24036311) MGI
Ensembl		 PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chrNW_004936528:7,585,937...7,613,022 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
G Trim28 tripartite motif containing 28 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5319411|PMID:22495301) MGI
Ensembl		 PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chrNW_004937062:126,832...132,938 JBrowse link
G Zfp42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chrNW_004936554:1,786,355...1,787,125 JBrowse link
G Zfp57 ZFP57 zinc finger protein involved_in ISO (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chrNW_004936723:1,063,969...1,069,986 JBrowse link
G Znf445 zinc finger protein 445 involved_in ISO (PMID:30602440)
(MGI:6284037|PMID:30602440)		 UniProt PMID:30602440 MGI:6284037 NCBI chrNW_004936695:1,066,703...1,087,289 JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971629 core histone macro-H2A.1 NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chrNW_004936490:17,430,383...17,465,889 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,024,077...5,069,152 JBrowse link
G Hat1 histone acetyltransferase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936509:2,105,866...2,153,089 JBrowse link
G LOC101963041 histone H3.3A acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5694896|PMID:26159997) MGI
Ensembl		 PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chrNW_004936594:959,493...961,703 JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:26,045,500...26,105,980 JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14975
    cellular process 13962
      cellular component organization or biogenesis 5505
        cellular component organization 5368
          chromatin organization 412
            chromatin assembly 146
              DNA replication-dependent chromatin assembly 18
              DNA replication-independent chromatin assembly + 24
              co-transcriptional chromatin reassembly 0
              heterochromatin assembly + 76
              nucleosome assembly + 67
              regulation of chromatin assembly + 29
Path 2
Term Annotations click to browse term
  biological_process 14975
    cellular process 13962
      cellular component organization or biogenesis 5505
        cellular component organization 5368
          organelle organization 3270
            chromosome organization 797
              chromatin organization 412
                chromatin assembly 146
                  DNA replication-dependent chromatin assembly 18
                  DNA replication-independent chromatin assembly + 24
                  co-transcriptional chromatin reassembly 0
                  heterochromatin assembly + 76
                  nucleosome assembly + 67
                  regulation of chromatin assembly + 29
paths to the root