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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin assembly
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Accession:GO:0031497 term browser browse the term
Definition:The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus.
Synonyms:exact_synonym: establishment of chromatin architecture
 broad_synonym: chromatin maintenance



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chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDAN1 codanin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:128,641,411...128,655,556
Ensembl chr 1:128,641,430...128,655,554
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chr11:7,195,556...7,321,071 JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:63,307,703...63,320,799
Ensembl chr 6:63,308,187...63,340,917
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPP centromere protein P involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 3:42,053,074...42,309,745
Ensembl chr 3:42,053,058...42,308,381
JBrowse link
G HJURP Holliday junction recognition protein involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr15:134,106,561...134,123,163
Ensembl chr15:134,106,569...134,123,107
JBrowse link
G MIS18A MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:5438906|PMID:22516971)
(PMID:21873635)
MGI
Ensembl
GO_Central
GO_Central
PMID:21873635 PMID:22516971 GO_REF:0000107 MGI:5438906 NCBI chr13:195,912,044...195,928,309
Ensembl chr13:195,911,299...195,928,292
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G OIP5 Opa interacting protein 5 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:130,036,478...130,054,058
Ensembl chr 1:130,036,480...130,047,043
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3768461|PMID:17938196)
(MGI:3611125|PMID:16322236)
Ensembl
Ensembl
MGI
PMID:16322236 PMID:17938196 GO_REF:0000107 MGI:3611125 MGI:3768461 NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,609,139
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,332,801...36,386,074
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,412
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G KMT2B lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chr 6:45,146,863...45,166,854
Ensembl chr 6:45,146,846...45,166,852
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:103,683,077...103,768,372
Ensembl chr 1:103,683,065...103,752,427
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3611125|PMID:16322236) Ensembl
Ensembl
MGI
PMID:16322236 GO_REF:0000107 MGI:3611125 NCBI chr 2:76,913,880...76,923,435
Ensembl chr 2:76,906,644...76,923,435
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298
JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IEA Ensembl
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665
JBrowse link
G HIST1H3E histone cluster 1, H3e involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G LOC100158117 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC106504121 histone H3.1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G LOC110261477 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:3694318|PMID:16728391)
GO_Central
GO_Central
Ensembl
UniProt
Ensembl
PMID:16728391 PMID:21873635 GO_REF:0000107 MGI:3694318 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:88,987,092...89,006,815 JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G CABIN1 calcineurin binding protein 1 involved_in IEA InterPro
InterPro
Ensembl
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr14:49,686,196...49,787,723
Ensembl chr14:49,686,197...49,787,688
JBrowse link
G H3-3A H3 histone, family 3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665
JBrowse link
G HIRA histone cell cycle regulator involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr14:51,029,117...51,102,409
Ensembl chr14:51,029,126...51,102,506
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G LOC100158117 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC100521680 histone H3.3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G LOC110261477 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G UBN1 ubinuclein 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:37,512,306...37,555,255
Ensembl chr 3:37,512,314...37,555,185
JBrowse link
G UBN2 ubinuclein 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr18:10,371,121...10,451,243
Ensembl chr18:10,381,209...10,451,255
JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chr17:37,542,615...37,718,787 JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chr 3:41,344,908...41,393,999
Ensembl chr 3:41,337,071...41,393,997
JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr 2:2,019,391...2,022,092
Ensembl chr 2:2,019,490...2,021,853
JBrowse link
G CTCF CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:28,188,002...28,261,009
Ensembl chr 6:28,195,668...28,261,009
JBrowse link
G DNMT3L DNA methyltransferase 3 like involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3663953|PMID:16920095) Ensembl
Ensembl
MGI
PMID:16920095 GO_REF:0000107 MGI:3663953 NCBI chr13:207,119,025...207,141,990 JBrowse link
G GNAS GNAS complex locus involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4454202|PMID:20427744) Ensembl
Ensembl
MGI
PMID:20427744 GO_REF:0000107 MGI:4454202 NCBI chr17:58,985,580...59,053,022
Ensembl chr17:58,998,981...59,053,021
JBrowse link
G NDN necdin, MAGE family member involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1345919|PMID:10508517) Ensembl
MGI
PMID:10508517 GO_REF:0000107 MGI:1345919 NCBI chr 1:142,412,688...142,413,665
Ensembl chr 1:142,412,565...142,414,240
JBrowse link
G ZDBF2 zinc finger DBF-type containing 2 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:6151717|PMID:27841881)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:27841881 MGI:6151717 NCBI chr15:109,563,445...109,593,858
Ensembl chr15:109,563,440...109,589,700
JBrowse link
G ZFP57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chr 7:22,607,420...22,612,064
Ensembl chr 7:22,605,125...22,612,064
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:130,849,835...130,874,735
Ensembl chr 1:130,849,835...130,878,321
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:52,586,089...52,596,154
Ensembl chr10:52,586,280...52,596,376
JBrowse link
G CBX3 chromobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:46,193,138...46,205,114
Ensembl chr18:46,193,138...46,204,714
JBrowse link
G CTBP1 C-terminal binding protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:475,164...496,510
Ensembl chr 8:475,082...495,984
JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:76,339,452...76,401,974
Ensembl chr 2:76,339,470...76,401,966
JBrowse link
G EED embryonic ectoderm development involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:20,123,077...20,158,747
Ensembl chr 9:20,123,857...20,158,816
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:20,107,744...20,139,764
Ensembl chr12:20,115,297...20,141,749
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,384,995...109,450,941
JBrowse link
G H2AFY H2A histone family, member Y involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
G H2AFZ H2A histone family, member Z involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:120,563,752...120,566,023
Ensembl chr 8:120,563,752...120,566,034
JBrowse link
G HELLS helicase, lymphoid specific acts_upstream_of_or_within ISO (MGI:3510059|PMID:15448183) MGI PMID:15448183 MGI:3510059 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:16901784) UniProt PMID:16901784 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:19158276) GO_Central PMID:19158276 NCBI chr11:7,195,556...7,321,071 JBrowse link
G KMT2D lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chr 5:15,049,827...15,091,622 JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr17:46,135,567...46,176,967
Ensembl chr17:46,119,409...46,173,944
JBrowse link
G LMNA lamin A/C involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:93,899,019...93,927,255
Ensembl chr 4:93,899,026...93,949,398
JBrowse link
G LMNB1 lamin B1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:129,807,228...129,862,211
Ensembl chr 2:129,807,318...129,871,725
JBrowse link
G LMNB2 lamin B2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:76,125,932...76,146,564
Ensembl chr 2:76,125,926...76,146,733
JBrowse link
G LOC100154071 histone H2A type 1-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:21,592,937...21,593,433 JBrowse link
G LOC100154181 histone H2A type 2-B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,168,195...99,168,679
Ensembl chr 4:99,168,255...99,168,647
JBrowse link
G LOC100155734 histone H2A type 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,863,594...20,864,115
Ensembl chr 7:20,789,769...20,867,386
JBrowse link
G LOC100157763 histone H2A type 1-H involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:21,582,735...21,583,552
Ensembl chr 7:21,226,552...21,232,705
JBrowse link
G LOC100158121 histone H2A type 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,857,026...20,858,357
Ensembl chr 7:21,632,862...21,936,037
JBrowse link
G LOC100359361 high mobility group AT-hook 2-like involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:191,094,785...191,105,394 JBrowse link
G LOC100510904 histone H1.0 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G LOC100512448 histone H2A.V involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:50,533,382...50,548,341
Ensembl chr18:50,533,429...50,556,439
JBrowse link
G LOC100520991 histone H2A-Bbd type 1-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:32,692,523...32,693,072 JBrowse link
G LOC100620620 histone H2A-Bbd type 2/3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:125,537,401...125,540,026 JBrowse link
G LOC100621538 histone H2A type 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:51,688,375...51,704,824
Ensembl chr 2:51,693,853...51,694,245
JBrowse link
G LOC100622387 histone H2A type 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:21,632,867...21,633,939
Ensembl chr 7:21,632,862...21,936,037
JBrowse link
G LOC100625850 histone H2A.J involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:57,777,008...57,777,673
Ensembl chr 5:57,777,010...57,777,654
JBrowse link
G LOC102159655 histone H2A type 2-A-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,197,499...99,198,164
Ensembl chr 4:99,197,661...99,198,053
JBrowse link
G LOC106510170 histone H2A type 2-C involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,168,743...99,169,270
Ensembl chr 4:99,168,806...99,169,195
JBrowse link
G LOC110255320 lysine-specific demethylase 6A-like acts_upstream_of_or_within ISO (MGI:5305502|PMID:22192413) MGI PMID:22192413 MGI:5305502 NCBI chr  Y:8,937,949...9,087,971 JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638) MGI
Ensembl
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:124,735,523...124,789,063
Ensembl chr  X:124,735,656...124,789,110
JBrowse link
G MORF4L1 mortality factor 4 like 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:48,050,050...48,075,799
Ensembl chr 7:48,050,045...48,075,796
JBrowse link
G MORF4L2 mortality factor 4 like 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:84,553,770...84,566,304
Ensembl chr  X:84,552,705...84,569,030
JBrowse link
G MSL3 MSL complex subunit 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:8,519,366...8,535,249
Ensembl chr  X:8,518,835...8,535,249
JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:23,362,631...23,375,779
Ensembl chr12:23,362,654...23,375,775
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:254,033,378...254,036,224 JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:37,485,601...37,536,159
Ensembl chr12:37,485,586...37,536,146
JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:19,186,754...19,317,642
Ensembl chr11:19,186,759...19,317,690
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:13,293,278...13,317,074
Ensembl chr  X:13,280,977...13,317,079
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) GO_Central PMID:26109053 NCBI chr 2:40,581,816...40,604,040 JBrowse link
G TNP1 transition protein 1 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr15:119,037,492...119,038,099
Ensembl chr15:119,037,496...119,038,105
JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 7:37,655,808...37,785,301
Ensembl chr 7:37,655,847...37,784,359
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM172A family with sequence similarity 172 member A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:100,477,770...100,893,594
Ensembl chr 2:100,477,775...100,893,580
JBrowse link
G NRDE2 NRDE-2, necessary for RNA interference, domain containing involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:112,039,949...112,090,632
Ensembl chr 7:112,038,234...112,090,511
JBrowse link
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr13:157,495,075...157,522,349
Ensembl chr13:157,497,562...157,504,418
JBrowse link
G ZNFX1 zinc finger NFX1-type containing 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:50,925,789...50,958,722
Ensembl chr17:50,925,789...50,958,705
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:62,777,236...62,787,342
Ensembl chr 5:62,777,352...62,787,483
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:62,811,819...62,820,532
Ensembl chr 5:62,810,879...62,820,173
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,621
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:42,988,607...43,078,811
Ensembl chr 3:42,988,634...43,078,813
JBrowse link
G PHF8 PHD finger protein 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:46,648,164...46,761,192
Ensembl chr  X:46,648,165...46,759,248
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:239,842,062...239,868,404
Ensembl chr 1:239,842,063...239,919,984
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11897662) MGI
Ensembl
Ensembl
PMID:11897662 GO_REF:0000107 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2675150|PMID:12842904) MGI
Ensembl
Ensembl
PMID:12842904 GO_REF:0000107 MGI:2675150 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G BAZ1A bromodomain adjacent to zinc finger domain 1A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:64,969,626...65,069,969
Ensembl chr 7:64,877,674...65,069,889
JBrowse link
G BRD2 bromodomain containing 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,150,658...25,165,433
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G CHRAC1 chromatin accessibility complex subunit 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:3,014,171...3,028,808
Ensembl chr 4:3,024,615...3,028,725
JBrowse link
G DAXX death domain associated protein involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 7:29,676,854...29,681,145
Ensembl chr 7:29,676,854...29,681,110
JBrowse link
G DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:76,064,598...76,070,301
Ensembl chr14:76,061,446...76,074,604
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:53,849,673...53,856,229
Ensembl chr 6:53,849,850...53,859,385
JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:20,743,716...20,744,356
Ensembl chr 7:20,743,716...20,744,356
JBrowse link
G H1-3 H1.3 linker histone, cluster member involved_in IEA InterPro
InterPro
GO_REF:0000002 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IEA InterPro
InterPro
GO_REF:0000002 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G H2AFY H2A histone family, member Y involved_in IEA UniProt
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
G H2BC11 H2B clustered histone 11 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 Ensembl chr 7:21,219,627...21,227,153 JBrowse link
G H3-3A H3 histone, family 3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HIST1H2BD histone cluster 1, H2bd involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 7:20,821,090...20,829,491
Ensembl chr 7:20,821,091...20,829,493
JBrowse link
G HIST1H3E histone cluster 1, H3e involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G HMGB1 high mobility group box 1 involved_in IDA (PMID:2465778) AgBase
AgBase
PMID:2465778 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 involved_in IDA (PMID:2465778) AgBase
AgBase
PMID:2465778 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 6:78,975,551...79,007,921
Ensembl chr 6:78,975,550...79,007,214
JBrowse link
G KAT6B lysine acetyltransferase 6B involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr14:77,390,790...77,597,674
Ensembl chr14:77,375,758...77,597,674
JBrowse link
G LOC100152135 histone H2B type 1-A-like involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:3702345|PMID:17261847)
GO_Central
Ensembl
GO_Central
MGI
PMID:17261847 PMID:21873635 GO_REF:0000107 MGI:3702345 NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
JBrowse link
G LOC100152878 histone H2B type 1-A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:20,467,395...20,471,314 JBrowse link
G LOC100155267 histone H2B type 2-F-like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:45,760,877...45,761,561 JBrowse link
G LOC100156127 histone H2B type 1-M involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:20,842,185...20,842,659 JBrowse link
G LOC100156741 histone cluster 2, H3-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:99,199,243...99,199,653 JBrowse link
G LOC100156937 histone H2B type 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:20,862,784...20,863,395
Ensembl chr 7:20,897,623...20,907,522
JBrowse link
G LOC100158117 histone H4 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC100510904 histone H1.0 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G LOC100515302 histone H2B type 3-B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:51,687,852...51,694,237
Ensembl chr 2:51,693,136...51,693,516
JBrowse link
G LOC100516295 histone H1x involved_in IEA InterPro GO_REF:0000002 NCBI chr13:71,760,464...71,762,035 JBrowse link
G LOC100517800 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:125,277,575...125,280,752 JBrowse link
G LOC100519930 histone H2B subacrosomal variant-like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr16:49,000,352...49,001,341 JBrowse link
G LOC100521680 histone H3.3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G LOC100525798 nucleosome assembly protein 1-like 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr  X:58,969,577...59,176,807
Ensembl chr  X:58,966,830...58,972,091
JBrowse link
G LOC100625034 testis-specific Y-encoded protein 4-like involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr  Y:40,190,400...40,192,431 JBrowse link
G LOC100738859 histone H2B type 2-E involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,169,471...99,171,665
Ensembl chr 4:99,169,485...99,186,310
JBrowse link
G LOC102160938 late histone H2B.L4-like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr18:6,017,053...6,022,069
Ensembl chr18:6,019,516...6,022,049
JBrowse link
G LOC102161782 histone H3 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr 4:99,187,225...99,187,722 JBrowse link
G LOC102162202 histone H2B type 2-E involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,189,505...99,191,226
Ensembl chr 4:99,169,485...99,186,310
JBrowse link
G LOC106504121 histone H3.1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G LOC106506652 putative testis-specific Y-encoded-like protein 3 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr17:35,836,203...35,838,807 JBrowse link
G LOC110259305 histone H3.1 involved_in ISO (PMID:25615412)
(PMID:20498094)
UniProt PMID:20498094 PMID:25615412 NCBI chr 2:51,709,942...51,710,952 JBrowse link
G LOC110261477 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261669 histone H2B type 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:20,897,783...20,898,253 JBrowse link
G LOC110261673 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G LOC595122 histone H1.3-like protein involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:20,881,642...20,882,307 JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IEA UniProt
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226
JBrowse link
G MCM2 minichromosome maintenance complex component 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2156014|PMID:10531422) Ensembl
Ensembl
MGI
PMID:10531422 GO_REF:0000107 MGI:2156014 NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,620
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:38,763,444...38,812,862
Ensembl chr 3:38,755,420...38,782,056
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:39,329,628...39,363,699
Ensembl chr 5:39,328,051...39,363,711
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
InterPro
Ensembl
InterPro
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr 2:2,070,140...2,117,503
Ensembl chr 2:2,067,870...2,117,487
JBrowse link
G NAP1L5 nucleosome assembly protein 1 like 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:130,364,566...130,365,464
Ensembl chr 8:130,364,566...130,365,464
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) UniProt PMID:25615412 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G NEFH neurofilament heavy chain involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910
JBrowse link
G NPM1 nucleophosmin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,296...52,781,740
JBrowse link
G PADI4 peptidyl arginine deiminase 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:75,935,909...75,966,275
Ensembl chr 6:75,935,903...75,966,169
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:254,033,378...254,036,224 JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:42,223,752...42,259,992
Ensembl chr14:42,223,725...42,297,113
JBrowse link
G SET SET nuclear proto-oncogene involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 1:269,050,447...269,064,462 JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 1:19,612,915...19,697,444
Ensembl chr 1:19,612,823...19,695,272
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G SMYD3 SET and MYND domain containing 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5500979|PMID:23752591) Ensembl
Ensembl
MGI
PMID:23752591 GO_REF:0000107 MGI:5500979 NCBI chr10:18,267,598...19,019,520
Ensembl chr10:18,267,603...19,019,537
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA
ISS
Ensembl
Ensembl
UniProt
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:40,581,816...40,604,040 JBrowse link
G TSPYL1 TSPY like 1 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 1:81,906,168...81,909,461
Ensembl chr 1:81,908,075...81,909,613
JBrowse link
G TSPYL2 TSPY like 2 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr  X:45,909,688...45,916,859
Ensembl chr  X:45,909,686...45,916,941
JBrowse link
G TSPYL4 TSPY like 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:81,888,946...81,893,643 JBrowse link
G TSPYL5 TSPY like 5 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 4:39,362,945...39,367,405
Ensembl chr 4:39,362,962...39,369,885
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr12:59,200,041...59,215,941
Ensembl chr12:59,200,031...59,209,664
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,361,630...116,436,519
JBrowse link
G H3-3A H3 histone, family 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G LOC100521680 histone H3.3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,436...74,577,772
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 5:58,022,734...58,149,980
Ensembl chr 5:58,022,740...58,150,185
JBrowse link
G ATF7IP2 activating transcription factor 7 interacting protein 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:32,523,462...32,598,946
Ensembl chr 3:32,523,461...32,598,855
JBrowse link
G DNMT1 DNA methyltransferase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:47,755,264...47,800,432
Ensembl chr14:47,754,282...47,799,643
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:447,019...480,121
Ensembl chr11:447,052...480,121
JBrowse link
G PPHLN1 periphilin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:73,556,205...73,696,403
Ensembl chr 5:73,496,820...73,709,342
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:42,263,560...42,299,596
Ensembl chr 5:42,261,290...42,299,514
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,373...98,293,096
JBrowse link
G TASOR transcription activation suppressor involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,491,055...38,557,931
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G ZNF304 zinc finger protein 304 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:61,740,677...61,790,290
Ensembl chr 6:61,695,111...61,784,106
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,365,723...21,372,170
Ensembl chr 5:21,365,763...21,392,726
JBrowse link
G RAB5B RAB5B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,373,333...21,392,729
Ensembl chr 5:21,365,763...21,392,726
JBrowse link
G SIN3A SIN3 transcription regulator family member A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:58,171,821...58,246,126
Ensembl chr 7:58,176,166...58,245,762
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:127,481,678...127,540,393
Ensembl chr 9:127,481,684...127,540,790
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A involved_in
acts_upstream_of_or_within
ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
UniProt
MGI
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021
JBrowse link
G BEND3 BEN domain containing 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
Ensembl
GO_Central
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:73,184,745...73,224,663
Ensembl chr 1:73,184,753...73,360,113
JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:3,152,162...3,169,380
Ensembl chr 9:3,150,877...3,162,562
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:42,797,309...42,811,457
Ensembl chr  X:42,797,828...42,814,003
JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr12:18,989,833...19,006,145
Ensembl chr12:18,989,836...19,006,141
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP10 poly(ADP-ribose) polymerase family member 10 involved_in ISO (PMID:15674325) UniProt PMID:15674325 NCBI chr 4:688,511...695,808 JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:40,581,816...40,604,040 JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM1A lysine demethylase 1A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:80,903,407...80,971,875
Ensembl chr 6:80,903,496...80,971,595
JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:33,198,295...33,319,477
Ensembl chr 1:33,198,301...33,319,367
JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G SAMD1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr 2:65,096,499...65,099,799
Ensembl chr 2:65,096,187...65,099,794
JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5528755|PMID:24036311) Ensembl
Ensembl
MGI
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,697,972...48,729,307
JBrowse link
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267) UniProt PMID:17143267 PMID:22722204 MGI:5432962 MGI:5447615 NCBI chr 5:62,861,492...62,868,131 JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:117,193,935...117,282,151
Ensembl chr13:117,180,544...117,277,232
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:5559953|PMID:24291790) MGI PMID:24291790 MGI:5559953 NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,621
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5319411|PMID:22495301) Ensembl
Ensembl
MGI
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G ZFP42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chr17:7,401,729...7,409,027
Ensembl chr17:7,402,071...7,403,247
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in ISO (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chr 7:22,607,420...22,612,064
Ensembl chr 7:22,605,125...22,612,064
JBrowse link
G ZNF445 zinc finger protein 445 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:27,748,437...27,783,348
Ensembl chr13:27,748,481...27,783,315
JBrowse link
regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ1A bromodomain adjacent to zinc finger domain 1A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:64,969,626...65,069,969
Ensembl chr 7:64,877,674...65,069,889
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2AFY H2A histone family, member Y NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DOT1L DOT1 like histone lysine methyltransferase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:76,339,452...76,401,974
Ensembl chr 2:76,339,470...76,401,966
JBrowse link
G DPY30 dpy-30 histone methyltransferase complex regulatory subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:107,520,641...107,533,504
Ensembl chr 3:107,520,642...107,533,496
JBrowse link
G DYDC2 DPY30 domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:82,197,194...82,209,477
Ensembl chr14:82,197,189...82,209,280
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chr12:20,107,744...20,139,764
Ensembl chr12:20,115,297...20,141,749
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,384,995...109,450,941
JBrowse link
G H3-3A H3 histone, family 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665
JBrowse link
G LOC100521680 histone H3.3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:769,518...832,036
Ensembl chr15:774,189...832,010
JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,436...74,577,772
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17269
    cellular process 16298
      cellular component organization or biogenesis 6282
        cellular component organization 6098
          chromatin organization 516
            chromatin assembly 195
              DNA replication-dependent chromatin assembly 15
              DNA replication-independent chromatin assembly + 22
              co-transcriptional chromatin reassembly 0
              heterochromatin assembly + 115
              nucleosome assembly + 79
              regulation of chromatin assembly + 34
Path 2
Term Annotations click to browse term
  biological_process 17269
    cellular process 16298
      cellular component organization or biogenesis 6282
        cellular component organization 6098
          organelle organization 3798
            chromosome organization 942
              chromatin organization 516
                chromatin assembly 195
                  DNA replication-dependent chromatin assembly 15
                  DNA replication-independent chromatin assembly + 22
                  co-transcriptional chromatin reassembly 0
                  heterochromatin assembly + 115
                  nucleosome assembly + 79
                  regulation of chromatin assembly + 34
paths to the root