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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin assembly
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Accession:GO:0031497 term browser browse the term
Definition:The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus.
Synonyms:exact_synonym: establishment of chromatin architecture
 broad_synonym: chromatin maintenance



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chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 congenital dyserythropoietic anemia, type I (human) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:120,546,635...120,561,998
Ensembl chr 2:120,546,635...120,680,609
JBrowse link
G Chaf1a chromatin assembly factor 1, subunit A (p150) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:56,347,416...56,375,026
Ensembl chr17:56,347,439...56,379,289
JBrowse link
G Chaf1b chromatin assembly factor 1, subunit B (p60) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:93,680,788...93,703,003
Ensembl chr16:93,680,789...93,703,003
JBrowse link
G Hmgb1 high mobility group box 1 involved_in IDA (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299
JBrowse link
G M1ap meiosis 1 associated protein involved_in NAS (MGI:1330413|PMID:9927484) UniProt PMID:9927484 MGI:1330413 NCBI chr 6:82,923,889...83,007,290
Ensembl chr 6:82,923,883...83,007,290
JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:156,319,112...156,332,073
Ensembl chr 4:156,320,376...156,332,073
JBrowse link
G Rbbp4 retinoblastoma binding protein 4, chromatin remodeling factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:129,200,893...129,229,163
Ensembl chr 4:129,200,893...129,229,163
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:97,229,103...97,341,989
Ensembl chr 7:97,229,096...97,341,985
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:81,426,572...81,466,088
Ensembl chr 8:81,425,136...81,466,126
JBrowse link
G Trp53 transformation related protein 53 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:49,617,501...49,806,457
Ensembl chr13:49,617,499...49,806,261
JBrowse link
G Hjurp Holliday junction recognition protein involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 1:88,186,578...88,205,366
Ensembl chr 1:88,190,193...88,205,355
JBrowse link
G Itgb3bp integrin beta 3 binding protein (beta3-endonexin) involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 4:99,655,643...99,717,403
Ensembl chr 4:99,653,639...99,787,010
JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:5438906|PMID:22516971)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:22516971 MGI:5438906 MGI:6201960 NCBI chr16:90,516,200...90,524,259
Ensembl chr16:90,516,200...90,524,292
JBrowse link
G Nasp nuclear autoantigenic sperm protein (histone-binding) involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:116,458,249...116,488,894
Ensembl chr 4:116,458,249...116,485,138
JBrowse link
G Oip5 Opa interacting protein 5 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:119,440,013...119,448,986
Ensembl chr 2:119,439,993...119,448,950
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase (cytosine-5) 1 involved_in IDA (MGI:3687778|PMID:10615135) UniProt PMID:10615135 MGI:3687778 NCBI chr 9:20,818,501...20,871,184
Ensembl chr 9:20,818,505...20,871,184
JBrowse link
G Dnmt3a DNA methyltransferase 3A acts_upstream_of_or_within IDA
IGI
(MGI:3611125|PMID:16322236)
(MGI:3768461|PMID:17938196)
MGI PMID:16322236 PMID:17938196 MGI:3611125 MGI:3768461 NCBI chr12:3,851,559...3,964,443
Ensembl chr12:3,856,007...3,964,443
JBrowse link
G Dnmt3b DNA methyltransferase 3B acts_upstream_of_or_within IGI (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chr 2:153,491,332...153,529,650
Ensembl chr 2:153,491,370...153,529,650
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:129,409,897...129,436,439
Ensembl chr 4:129,409,897...129,436,506
JBrowse link
G Hells helicase, lymphoid specific involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3573964|PMID:15647320)
GO_Central
UniProt
PMID:15647320 PMID:21873635 MGI:3573964 MGI:6201960 NCBI chr19:38,913,282...38,958,914
Ensembl chr19:38,919,359...38,959,495
JBrowse link
G Kmt2b lysine (K)-specific methyltransferase 2B acts_upstream_of_or_within IMP (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chr 7:30,268,280...30,288,371
Ensembl chr 7:30,268,283...30,288,151
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:70,701,298...70,761,769
Ensembl chr18:70,701,260...70,759,202
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within IDA (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr10:80,228,373...80,235,365
Ensembl chr10:80,228,373...80,235,384
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within IDA (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526
JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr10:53,473,057...53,485,321
Ensembl chr10:53,472,853...53,485,321
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 8:84,682,323...84,696,824
Ensembl chr 8:84,682,136...84,696,826
JBrowse link
G Chaf1a chromatin assembly factor 1, subunit A (p150) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:56,347,416...56,375,026
Ensembl chr17:56,347,439...56,379,289
JBrowse link
G Chaf1b chromatin assembly factor 1, subunit B (p60) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:93,680,788...93,703,003
Ensembl chr16:93,680,789...93,703,003
JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:23,945,868...23,946,369
Ensembl chr13:23,945,836...23,946,369
JBrowse link
G H3c10 H3 clustered histone 10 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:21,901,798...21,902,285
Ensembl chr13:21,901,829...21,902,239
JBrowse link
G H3c11 H3 clustered histone 11 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:21,967,085...21,967,567
Ensembl chr13:21,967,130...21,967,540
JBrowse link
G H3c2 H3 clustered histone 2 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:23,936,328...23,936,823
Ensembl chr13:23,936,250...23,936,869
JBrowse link
G H3c8 H3 clustered histone 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:23,719,588...23,720,079
Ensembl chr13:23,719,592...23,720,121
JBrowse link
G H4c11 H4 clustered histone 11 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:21,919,204...21,919,626
Ensembl chr13:21,919,234...21,920,007
JBrowse link
G H4c12 H4 clustered histone 12 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:21,934,315...21,934,723
Ensembl chr13:21,934,364...21,934,675
JBrowse link
G H4c17 H4 clustered histone 17 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:21,995,916...21,996,320
Ensembl chr13:21,995,916...21,996,317
JBrowse link
G H4c18 H4 clustered histone 18 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:22,015,962...22,016,367
Ensembl chr13:22,015,937...22,016,366
JBrowse link
G H4c2 H4 clustered histone 2 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:23,940,920...23,941,369
Ensembl chr13:23,940,996...23,941,392
JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:23,882,067...23,882,441
Ensembl chr13:23,881,618...23,882,437
JBrowse link
G H4c4 H4 clustered histone 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:23,765,551...23,765,952
Ensembl chr13:23,765,581...23,766,718
JBrowse link
G H4c8 H4 clustered histone 8 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:23,715,214...23,715,648
Ensembl chr13:23,715,220...23,715,689
JBrowse link
G H4f16 H4 histone 16 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:136,780,991...136,781,429
Ensembl chr 6:136,778,551...136,781,413
JBrowse link
G Hat1 histone aminotransferase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:71,219,604...71,271,966
Ensembl chr 2:71,219,302...71,271,966
JBrowse link
G Ipo4 importin 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:55,862,857...55,873,321
Ensembl chr14:55,862,857...55,873,414
JBrowse link
G Nasp nuclear autoantigenic sperm protein (histone-binding) involved_in
acts_upstream_of_or_within
ISO
IBA
IDA
(MGI:6201960|PMID:21873635)
(MGI:3694318|PMID:16728391)
MGI
GO_Central
UniProt
PMID:16728391 PMID:21873635 GO_REF:0000096 MGI:3694318 MGI:4834177 MGI:6201960 NCBI chr 4:116,458,249...116,488,894
Ensembl chr 4:116,458,249...116,485,138
JBrowse link
G Rbbp4 retinoblastoma binding protein 4, chromatin remodeling factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:129,200,893...129,229,163
Ensembl chr 4:129,200,893...129,229,163
JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr10:53,473,057...53,485,321
Ensembl chr10:53,472,853...53,485,321
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 8:84,682,323...84,696,824
Ensembl chr 8:84,682,136...84,696,826
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:104,841,221...104,972,978
Ensembl chr  X:104,841,221...104,973,009
JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr10:75,481,944...75,600,194
Ensembl chr10:75,481,946...75,600,175
JBrowse link
G H3f3a H3.3 histone A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:180,630,125...180,641,170
Ensembl chr 1:180,628,397...180,641,508
JBrowse link
G H3f3b H3.3 histone B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:115,912,787...115,921,313
Ensembl chr11:115,912,738...115,918,788
JBrowse link
G H4c11 H4 clustered histone 11 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:21,919,204...21,919,626
Ensembl chr13:21,919,234...21,920,007
JBrowse link
G H4c12 H4 clustered histone 12 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:21,934,315...21,934,723
Ensembl chr13:21,934,364...21,934,675
JBrowse link
G H4c17 H4 clustered histone 17 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:21,995,916...21,996,320
Ensembl chr13:21,995,916...21,996,317
JBrowse link
G H4c18 H4 clustered histone 18 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:22,015,962...22,016,367
Ensembl chr13:22,015,937...22,016,366
JBrowse link
G H4c2 H4 clustered histone 2 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:23,940,920...23,941,369
Ensembl chr13:23,940,996...23,941,392
JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:23,882,067...23,882,441
Ensembl chr13:23,881,618...23,882,437
JBrowse link
G H4c4 H4 clustered histone 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:23,765,551...23,765,952
Ensembl chr13:23,765,581...23,766,718
JBrowse link
G H4c8 H4 clustered histone 8 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr13:23,715,214...23,715,648
Ensembl chr13:23,715,220...23,715,689
JBrowse link
G H4f16 H4 histone 16 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:136,780,991...136,781,429
Ensembl chr 6:136,778,551...136,781,413
JBrowse link
G Hat1 histone aminotransferase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:71,219,604...71,271,966
Ensembl chr 2:71,219,302...71,271,966
JBrowse link
G Hira histone cell cycle regulator involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr16:18,695,500...18,789,059
Ensembl chr16:18,695,787...18,789,059
JBrowse link
G Ipo4 importin 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:55,862,857...55,873,321
Ensembl chr14:55,862,857...55,873,414
JBrowse link
G Nasp nuclear autoantigenic sperm protein (histone-binding) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:116,458,249...116,488,894
Ensembl chr 4:116,458,249...116,485,138
JBrowse link
G Rbbp4 retinoblastoma binding protein 4, chromatin remodeling factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:129,200,893...129,229,163
Ensembl chr 4:129,200,893...129,229,163
JBrowse link
G Ubn1 ubinuclein 1 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr16:4,867,921...4,904,153
Ensembl chr16:4,867,921...4,904,153
JBrowse link
G Ubn2 ubinuclein 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:38,410,860...38,489,698
Ensembl chr 6:38,410,885...38,501,760
JBrowse link
gene silencing by RNA-directed DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcnq1ot1 KCNQ1 overlapping transcript 1 acts_upstream_of_or_within IMP
IDA
(MGI:4830046|PMID:20573698)
(MGI:3054495|PMID:15340049)
MGI PMID:15340049 PMID:20573698 MGI:3054495 MGI:4830046 NCBI chr 7:142,766,848...142,850,284
Ensembl chr 7:142,757,195...142,850,286
JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G a nonagouti acts_upstream_of_or_within IMP (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr 2:154,792,519...154,892,932
Ensembl chr 2:154,633,322...154,892,932
Ensembl chr 2:154,633,322...154,892,932
JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within IMP (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr17:26,350,208...26,414,785
Ensembl chr17:26,357,662...26,414,785
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C (P57) acts_upstream_of_or_within IMP (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr 7:143,012,076...143,014,802
Ensembl chr 7:143,012,076...143,014,787
JBrowse link
G Ctcf CCCTC-binding factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:106,351,135...106,409,554
Ensembl chr 8:106,363,200...106,409,554
JBrowse link
G Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like acts_upstream_of_or_within IMP (MGI:3663953|PMID:16920095) MGI PMID:16920095 MGI:3663953 NCBI chr10:77,878,121...77,899,456
Ensembl chr10:77,877,781...77,899,456
JBrowse link
G Gnas GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus acts_upstream_of_or_within IMP (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr 2:174,126,113...174,188,537
Ensembl chr 2:174,126,113...174,188,537
JBrowse link
G Gnasas1 GNAS antisense RNA 1 acts_upstream_of_or_within IMP (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr 2:174,123,030...174,137,229
Ensembl chr 2:174,123,030...174,137,229
JBrowse link
G Meg3 maternally expressed 3 acts_upstream_of_or_within IMP
IDA
(MGI:4839866|PMID:20610486)
(MGI:5465388|PMID:23195472)
MGI PMID:20610486 PMID:23195472 MGI:4839866 MGI:5465388 NCBI chr12:109,506,879...109,538,163
Ensembl chr12:109,506,884...109,538,160
JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within IMP (MGI:1345919|PMID:10508517) MGI PMID:10508517 MGI:1345919 NCBI chr 7:61,998,025...61,999,676
Ensembl chr 7:61,996,317...62,000,010
JBrowse link
G Zdbf2 zinc finger, DBF-type containing 2 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:6151717|PMID:27841881)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:27841881 MGI:6151717 MGI:6201960 NCBI chr 1:63,239,517...63,353,735
Ensembl chr 1:63,312,424...63,353,735
JBrowse link
G Zfp57 zinc finger protein 57 acts_upstream_of_or_within IMP (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chr17:37,307,060...37,326,196
Ensembl chr17:37,312,055...37,321,527
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bahd1 bromo adjacent homology domain containing 1 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 2:118,730,817...118,755,009
Ensembl chr 2:118,730,858...118,755,009
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A acts_upstream_of_or_within IMP
IDA
(MGI:4462332|PMID:20168299)
(MGI:3653583|PMID:16678107)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr10:127,927,453...127,965,172
Ensembl chr10:127,927,446...127,965,172
JBrowse link
G Cbx3 chromobox 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:51,447,596...51,460,684
Ensembl chr 6:51,447,340...51,460,684
JBrowse link
G Cbx8 chromobox 8 acts_upstream_of_or_within ISS (MGI:1353080|PMID:10721694) MGI PMID:10721694 MGI:1353080 NCBI chr11:118,929,262...118,931,739
Ensembl chr11:118,927,131...118,931,795
JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:33,405,067...33,432,467
Ensembl chr 5:33,405,067...33,432,338
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in IDA
IBA
(MGI:3820717|PMID:19026781)
(MGI:6201960|PMID:21873635)
ARUK-UCL
GO_Central
PMID:19026781 PMID:21873635 MGI:3820717 MGI:6201960 NCBI chr11:101,081,941...101,117,289
Ensembl chr11:101,081,941...101,117,289
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:47,507,208...47,572,309
Ensembl chr 6:47,507,073...47,572,275
JBrowse link
G H1f0 H1.0 linker histone involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:78,912,412...78,914,704
Ensembl chr15:78,912,650...78,914,704
JBrowse link
G H1f9 H1.9 linker histone involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:94,858,419...94,859,282
Ensembl chr11:94,858,419...94,859,282
JBrowse link
G Hells helicase, lymphoid specific acts_upstream_of_or_within IMP (MGI:3510059|PMID:15448183) MGI PMID:15448183 MGI:3510059 NCBI chr19:38,913,282...38,958,914
Ensembl chr19:38,919,359...38,959,495
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:120,197,173...120,312,374
Ensembl chr10:120,197,180...120,312,374
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299
JBrowse link
G Hotair HOX transcript antisense RNA (non-protein coding) acts_upstream_of_or_within IMP (MGI:5528742|PMID:24075995) MGI PMID:24075995 MGI:5528742 NCBI chr15:102,852,497...102,856,381
Ensembl chr15:102,852,497...102,856,165
JBrowse link
G Kmt2d lysine (K)-specific methyltransferase 2D involved_in IMP (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chr15:98,729,550...98,771,958
Ensembl chr15:98,729,550...98,769,085
JBrowse link
G L3mbtl1 L3MBTL1 histone methyl-lysine binding protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:162,784,260...162,819,726
Ensembl chr 2:162,785,392...162,816,442
JBrowse link
G Lmna lamin A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:88,388,455...88,413,842
Ensembl chr 3:88,387,454...88,417,263
JBrowse link
G Lmnb1 lamin B1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr18:56,840,885...56,886,496
Ensembl chr18:56,840,885...56,886,496
JBrowse link
G Lmnb2 lamin B2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:80,737,197...80,754,079
Ensembl chr10:80,737,037...80,754,079
JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within IMP (MGI:3530434|PMID:15608638) MGI PMID:15608638 MGI:3530434 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,178,969
JBrowse link
G Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:62,442,035...62,443,251
Ensembl chr 4:62,440,886...62,443,305
JBrowse link
G Ppm1d protein phosphatase 1D magnesium-dependent, delta isoform involved_in IDA (MGI:5551345|PMID:24135283) UniProt PMID:24135283 MGI:5551345 NCBI chr11:85,202,080...85,237,897
Ensembl chr11:85,202,070...85,237,892
JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:73,430,298...73,563,446
Ensembl chr14:73,421,113...73,563,262
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IDA (MGI:3653583|PMID:16678107) ComplexPortal PMID:16678107 MGI:3653583 NCBI chr 8:81,426,572...81,466,088
Ensembl chr 8:81,425,136...81,466,126
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:46,640,144...46,658,162
Ensembl chr 7:46,640,144...46,658,159
JBrowse link
G Suv39h1 suppressor of variegation 3-9 1 involved_in TAS (MGI:3688024|PMID:11788710) UniProt PMID:11788710 MGI:3688024 NCBI chr  X:7,927,410...7,940,999
Ensembl chr  X:7,927,410...7,940,999
JBrowse link
G Tnp1 transition protein 1 involved_in ISO (PMID:11315969) UniProt PMID:11315969 NCBI chr 1:73,054,233...73,055,058
Ensembl chr 1:73,054,233...73,055,068
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IDA (MGI:4431162|PMID:20080676) UniProt PMID:20080676 MGI:4431162 NCBI chr17:47,239,217...47,321,812
Ensembl chr17:47,239,221...47,321,482
JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked acts_upstream_of_or_within IMP (MGI:5305502|PMID:22192413) MGI PMID:22192413 MGI:5305502 NCBI chr  Y:1,085,187...1,245,787
Ensembl chr  Y:1,096,861...1,245,759
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam172a family with sequence similarity 172, member A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:77,856,799...78,314,359
Ensembl chr13:77,850,152...78,314,354
JBrowse link
G Znfx1 zinc finger, NFX1-type containing 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:166,877,710...166,904,935
Ensembl chr 2:166,877,713...166,904,935
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 SMC hinge domain containing 1 involved_in IMP (MGI:5532809|PMID:23754746) UniProt PMID:23754746 MGI:5532809 NCBI chr17:71,651,484...71,782,361
Ensembl chr17:71,651,484...71,782,338
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:122,530,768...122,541,139
Ensembl chr 6:122,530,760...122,541,139
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 involved_in IMP (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chr 6:122,554,751...122,579,995
Ensembl chr 6:122,554,751...122,579,403
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:62,640,349...62,723,242
Ensembl chr10:62,640,349...62,744,775
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:48,955,226...49,024,361
Ensembl chr13:48,955,226...49,024,595
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:150,303,621...150,416,855
Ensembl chr  X:150,303,668...150,416,855
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic (leucine-rich) nuclear phosphoprotein 32 family, member B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:46,450,926...46,472,657
Ensembl chr 4:46,450,902...46,472,657
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr10:53,473,057...53,485,321
Ensembl chr10:53,472,853...53,485,321
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within IDA (MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:2675150 NCBI chr 8:84,682,323...84,696,824
Ensembl chr 8:84,682,136...84,696,826
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:104,841,221...104,972,978
Ensembl chr  X:104,841,221...104,973,009
JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain 1A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:54,939,774...55,061,155
Ensembl chr12:54,939,774...55,061,133
JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:34,330,993...34,341,581
Ensembl chr17:34,330,997...34,341,608
JBrowse link
G Chaf1a chromatin assembly factor 1, subunit A (p150) involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:56,347,416...56,375,026
Ensembl chr17:56,347,439...56,379,289
JBrowse link
G Chaf1b chromatin assembly factor 1, subunit B (p60) involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:93,680,788...93,703,003
Ensembl chr16:93,680,789...93,703,003
JBrowse link
G Chrac1 chromatin accessibility complex 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:72,962,261...72,965,924
Ensembl chr15:72,962,241...72,969,403
JBrowse link
G Daxx Fas death domain-associated protein involved_in IBA
IMP
ISO
(MGI:6201960|PMID:21873635)
(MGI:5567907|PMID:20651253)
GO_Central
UniProt
MGI
PMID:20651253 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:5567907 MGI:6201960 NCBI chr17:34,128,379...34,134,564
Ensembl chr17:34,128,388...34,134,564
JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:20,434,706...20,438,978
Ensembl chr14:20,434,706...20,438,978
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:45,474,647...45,480,418
Ensembl chr 7:45,474,647...45,480,368
JBrowse link
G H1f0 H1.0 linker histone involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr15:78,912,412...78,914,704
Ensembl chr15:78,912,650...78,914,704
JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:23,947,651...23,948,395
Ensembl chr13:23,947,649...23,948,389
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:23,922,790...23,923,514
Ensembl chr13:23,922,791...23,924,350
JBrowse link
G H1f3 H1.3 linker histone, cluster member involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:23,739,206...23,739,981
Ensembl chr13:23,737,436...23,744,860
JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:23,805,760...23,806,541
Ensembl chr13:23,804,612...23,806,541
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:21,964,002...21,964,795
Ensembl chr13:21,964,053...21,964,795
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:23,879,794...23,880,528
Ensembl chr13:23,879,797...23,880,708
JBrowse link
G H1f8 H1.8 linker histone acts_upstream_of_or_within ISA (MGI:2159419|PMID:11171391) MGI PMID:11171391 MGI:2159419 NCBI chr 6:115,921,892...115,927,203
Ensembl chr 6:115,921,899...115,927,197
JBrowse link
G H1f9 H1.9 linker histone involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr11:94,858,419...94,859,282
Ensembl chr11:94,858,419...94,859,282
JBrowse link
G H2ab2 H2A.B variant histone 2 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:115,590,875...115,591,222
Ensembl chr  X:115,590,875...115,591,222
JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:119,222,279...119,222,923
Ensembl chr  X:119,222,445...119,222,792
JBrowse link
G H2al2a H2A histone family member L2A acts_upstream_of_or_within IDA (MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:3702345 NCBI chr 2:18,001,228...18,001,769
Ensembl chr 2:18,001,228...18,001,769
JBrowse link
G H2bc1 H2B clustered histone 1 involved_in
acts_upstream_of_or_within
ISO
IBA
IMP
IDA
(MGI:6201960|PMID:21873635)
(MGI:5502464|PMID:23884607)
(MGI:3702345|PMID:17261847)
MGI
GO_Central
UniProt
PMID:17261847 PMID:21873635 PMID:23884607 GO_REF:0000096 MGI:3702345 MGI:4834177 MGI:5502464 MGI:6201960 NCBI chr13:24,117,708...24,118,139
Ensembl chr13:24,117,756...24,118,139
JBrowse link
G H2bc12 H2B clustered histone 12 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:22,219,991...22,220,490
Ensembl chr13:22,220,040...22,220,515
JBrowse link
G H2bc14 H2B clustered histone 14 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:21,906,214...21,906,696
Ensembl chr13:21,906,214...21,906,737
JBrowse link
G H2bc18 H2B clustered histone 18 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:96,177,016...96,177,508
Ensembl chr 3:96,177,068...96,177,448
JBrowse link
G H2bc21 H2B clustered histone 21 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 3:96,128,388...96,131,054
Ensembl chr 3:96,128,435...96,131,054
JBrowse link
G H2bc22 H2B clustered histone 22 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:21,971,652...21,985,731
Ensembl chr13:21,971,631...21,973,383
JBrowse link
G H2bc3 H2B clustered histone 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,930,717...23,931,206
Ensembl chr13:23,930,717...23,931,224
JBrowse link
G H2bc4 H2B clustered histone 4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,868,182...23,876,805
Ensembl chr13:23,868,182...23,876,891
JBrowse link
G H2bc7 H2B clustered histone 7 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,757,934...23,758,381
Ensembl chr13:23,757,910...23,758,370
JBrowse link
G H2bc9 H2B clustered histone 9 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,727,093...23,727,614
Ensembl chr13:23,725,884...23,727,562
JBrowse link
G H2bl1 H2B.L histone variant 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:99,120,598...99,121,073
Ensembl chr13:99,120,593...99,121,073
JBrowse link
G H2bu2 H2B.U histone 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:58,839,737...58,840,198
Ensembl chr11:58,839,746...58,840,359
JBrowse link
G H2bw2 H2B.W histone 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:135,828,074...135,829,122
Ensembl chr  X:135,828,074...135,829,125
JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:23,945,868...23,946,369
Ensembl chr13:23,945,836...23,946,369
JBrowse link
G H3c10 H3 clustered histone 10 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:21,901,798...21,902,285
Ensembl chr13:21,901,829...21,902,239
JBrowse link
G H3c11 H3 clustered histone 11 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:21,967,085...21,967,567
Ensembl chr13:21,967,130...21,967,540
JBrowse link
G H3c13 H3 clustered histone 13 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr 3:96,175,970...96,176,471
Ensembl chr 3:96,175,970...96,176,457
JBrowse link
G H3c15 H3 clustered histone 15 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr 3:96,145,795...96,146,443
Ensembl chr 3:96,145,424...96,146,443
JBrowse link
G H3c2 H3 clustered histone 2 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:23,936,328...23,936,823
Ensembl chr13:23,936,250...23,936,869
JBrowse link
G H3c7 H3 clustered histone 7 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr13:23,728,222...23,729,124
Ensembl chr13:23,728,222...23,729,482
JBrowse link
G H3c8 H3 clustered histone 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:23,719,588...23,720,079
Ensembl chr13:23,719,592...23,720,121
JBrowse link
G H3f3a H3.3 histone A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:180,630,125...180,641,170
Ensembl chr 1:180,628,397...180,641,508
JBrowse link
G H3f3b H3.3 histone B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:115,912,787...115,921,313
Ensembl chr11:115,912,738...115,918,788
JBrowse link
G H3f4 H3.4 histone involved_in ISO (PMID:25615412)
(PMID:20498094)
UniProt PMID:20498094 PMID:25615412 NCBI chr11:58,852,537...58,853,099
Ensembl chr11:58,852,599...58,853,364
JBrowse link
G H4c11 H4 clustered histone 11 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:21,919,204...21,919,626
Ensembl chr13:21,919,234...21,920,007
JBrowse link
G H4c12 H4 clustered histone 12 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:21,934,315...21,934,723
Ensembl chr13:21,934,364...21,934,675
JBrowse link
G H4c14 H4 clustered histone 14 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:96,170,250...96,170,633
Ensembl chr 3:96,168,998...96,170,627
JBrowse link
G H4c17 H4 clustered histone 17 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:21,995,916...21,996,320
Ensembl chr13:21,995,916...21,996,317
JBrowse link
G H4c18 H4 clustered histone 18 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:22,015,962...22,016,367
Ensembl chr13:22,015,937...22,016,366
JBrowse link
G H4c2 H4 clustered histone 2 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:23,940,920...23,941,369
Ensembl chr13:23,940,996...23,941,392
JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:23,882,067...23,882,441
Ensembl chr13:23,881,618...23,882,437
JBrowse link
G H4c4 H4 clustered histone 4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:23,765,551...23,765,952
Ensembl chr13:23,765,581...23,766,718
JBrowse link
G H4c8 H4 clustered histone 8 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr13:23,715,214...23,715,648
Ensembl chr13:23,715,220...23,715,689
JBrowse link
G H4f16 H4 histone 16 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:136,780,991...136,781,429
Ensembl chr 6:136,778,551...136,781,413
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299
JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr 8:57,964,877...57,969,033
Ensembl chr 8:57,964,941...57,969,033
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 4:137,938,789...137,971,994
Ensembl chr 4:137,943,607...137,971,994
JBrowse link
G Kat6a K(lysine) acetyltransferase 6A involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 8:23,349,458...23,433,275
Ensembl chr 8:23,349,551...23,433,275
JBrowse link
G Kat6b K(lysine) acetyltransferase 6B involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr14:21,549,284...21,722,546
Ensembl chr14:21,531,502...21,722,546
JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr10:61,574,419...61,620,383
Ensembl chr10:61,574,444...61,619,926
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within IDA (MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:2156014 NCBI chr 6:88,860,456...88,875,762
Ensembl chr 6:88,860,456...88,875,762
JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:3,690,365...3,722,645
Ensembl chr16:3,690,239...3,722,634
JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:111,308,754...111,334,011
Ensembl chr10:111,309,084...111,334,011
JBrowse link
G Nap1l2 nucleosome assembly protein 1-like 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:102,227,782...102,230,259
Ensembl chr  X:102,227,782...102,230,246
JBrowse link
G Nap1l3 nucleosome assembly protein 1-like 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:121,304,257...121,307,082
Ensembl chr  X:121,304,262...121,307,098
JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 involved_in IBA
ISO
IDA
(MGI:6201960|PMID:21873635)
(MGI:5897488|PMID:28366643)
GO_Central
MGI
UniProt
PMID:21873635 PMID:28366643 GO_REF:0000096 MGI:4834177 MGI:5897488 MGI:6201960 NCBI chr 7:143,067,316...143,103,698
Ensembl chr 7:143,067,316...143,102,843
JBrowse link
G Nap1l5 nucleosome assembly protein 1-like 5 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 6:58,882,218...58,884,111
Ensembl chr 6:58,882,218...58,884,061
JBrowse link
G Nasp nuclear autoantigenic sperm protein (histone-binding) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:116,458,249...116,488,894
Ensembl chr 4:116,458,249...116,485,138
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:33,102,498...33,114,143
Ensembl chr11:33,102,287...33,113,206
JBrowse link
G Padi4 peptidyl arginine deiminase, type IV involved_in IMP (MGI:5545819|PMID:24463520) UniProt PMID:24463520 MGI:5545819 NCBI chr 4:140,472,819...140,501,514
Ensembl chr 4:140,473,176...140,501,547
JBrowse link
G Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:62,442,035...62,443,251
Ensembl chr 4:62,440,886...62,443,305
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:97,229,103...97,341,989
Ensembl chr 7:97,229,096...97,341,985
JBrowse link
G Sart3 squamous cell carcinoma antigen recognized by T cells 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:113,880,505...113,910,461
Ensembl chr 5:113,880,507...113,910,571
JBrowse link
G Set SET nuclear oncogene involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 2:29,952,008...29,962,589
Ensembl chr 2:29,947,390...29,962,589
JBrowse link
G Shprh SNF2 histone linker PHD RING helicase involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr10:11,024,765...11,093,339
Ensembl chr10:11,025,171...11,093,339
JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 acts_upstream_of_or_within TAS (MGI:1929360|PMID:11163203) MGI PMID:11163203 MGI:1929360 NCBI chr19:26,580,804...26,755,721
Ensembl chr19:26,582,450...26,755,722
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within TAS (MGI:1929360|PMID:11163203) MGI PMID:11163203 MGI:1929360 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:81,426,572...81,466,088
Ensembl chr 8:81,425,136...81,466,126
JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within IMP (MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:5500979 NCBI chr 1:178,779,525...179,345,618
Ensembl chr 1:178,779,525...179,345,606
JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:46,640,144...46,658,162
Ensembl chr 7:46,640,144...46,658,159
JBrowse link
G Ssrp1 structure specific recognition protein 1 involved_in IC (MGI:6869994|PMID:21362547) ComplexPortal PMID:21362547 MGI:6869994 NCBI chr 2:84,867,464...84,877,458
Ensembl chr 2:84,867,578...84,877,453
JBrowse link
G Supt16 SPT16, facilitates chromatin remodeling subunit involved_in IC (MGI:6869994|PMID:21362547) ComplexPortal PMID:21362547 MGI:6869994 NCBI chr14:52,397,876...52,434,696
Ensembl chr14:52,397,871...52,434,873
JBrowse link
G Tspyl1 testis-specific protein, Y-encoded-like 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr10:34,158,186...34,160,881
Ensembl chr10:34,158,186...34,161,271
JBrowse link
G Tspyl2 TSPY-like 2 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr  X:151,119,847...151,125,480
Ensembl chr  X:151,119,848...151,125,421
JBrowse link
G Tspyl4 TSPY-like 4 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr10:34,173,417...34,177,316
Ensembl chr10:34,173,438...34,177,316
JBrowse link
G Tspyl5 testis-specific protein, Y-encoded-like 5 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr15:33,684,021...33,688,029
Ensembl chr15:33,684,021...33,688,030
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in ISS
IBA
ISO
(MGI:3834784|PMID:18772885)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
MGI
PMID:18772885 PMID:21873635 GO_REF:0000096 MGI:3834784 MGI:4834177 MGI:6201960 NCBI chr11:62,415,770...62,430,695
Ensembl chr11:62,415,772...62,430,087
JBrowse link
G Dicer1 dicer 1, ribonuclease type III acts_upstream_of_or_within IMP (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr12:104,653,999...104,718,227
Ensembl chr12:104,654,001...104,718,211
JBrowse link
G H3f3a H3.3 histone A acts_upstream_of_or_within IGI (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr 1:180,630,125...180,641,170
Ensembl chr 1:180,628,397...180,641,508
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within IGI (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr11:115,912,787...115,921,313
Ensembl chr11:115,912,738...115,918,788
JBrowse link
G Hells helicase, lymphoid specific involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3041983|PMID:14612388)
GO_Central
UniProt
PMID:14612388 PMID:21873635 MGI:3041983 MGI:6201960 NCBI chr19:38,913,282...38,958,914
Ensembl chr19:38,919,359...38,959,495
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:81,457,621...81,463,631
Ensembl chr10:81,457,619...81,463,631
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 6:136,495,787...136,587,848
NCBI chr 6:136,531,089...136,532,543
Ensembl chr 6:136,483,165...136,587,860
JBrowse link
G Atf7ip2 activating transcription factor 7 interacting protein 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:10,010,513...10,068,595
Ensembl chr16:10,010,576...10,069,342
JBrowse link
G Dnmt1 DNA methyltransferase (cytosine-5) 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:20,818,501...20,871,184
Ensembl chr 9:20,818,505...20,871,184
JBrowse link
G Morc2a microrchidia 2A involved_in ISO
IMP
(MGI:6271895|PMID:29728365) MGI
UniProt
PMID:29728365 GO_REF:0000096 MGI:4834177 MGI:6271895 NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477
JBrowse link
G Morc2b microrchidia 2B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:33,354,562...33,369,473
Ensembl chr17:33,332,325...33,358,657
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:56,905,692...56,934,887
Ensembl chr14:56,905,705...56,934,887
JBrowse link
G Pphln1 periphilin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:93,296,224...93,389,794
Ensembl chr15:93,296,231...93,389,391
JBrowse link
G Resf1 retroelement silencing factor 1 involved_in IMP
IBA
(MGI:6271895|PMID:29728365)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:29728365 MGI:6201960 MGI:6271895 NCBI chr 6:149,210,907...149,237,161
Ensembl chr 6:149,210,912...149,237,161
JBrowse link
G Setdb1 SET domain, bifurcated 1 involved_in IBA
ISO
IMP
(MGI:6201960|PMID:21873635)
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
GO_Central
MGI
UniProt
PMID:20164836 PMID:21873635 PMID:29728365 GO_REF:0000096 MGI:4834177 MGI:5440670 MGI:6201960 MGI:6271895 NCBI chr 3:95,230,836...95,264,513
Ensembl chr 3:95,230,836...95,264,513
JBrowse link
G Setdb2 SET domain, bifurcated 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:59,639,458...59,678,329
Ensembl chr14:59,639,458...59,678,333
JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr14:27,150,759...27,205,512
Ensembl chr14:27,150,791...27,205,512
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in ISO
IMP
(MGI:5440670|PMID:20164836) MGI
UniProt
PMID:20164836 GO_REF:0000096 MGI:4834177 MGI:5440670 NCBI chr 7:12,758,079...12,764,959
Ensembl chr 7:12,733,041...12,764,962
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin-dependent kinase 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:128,533,807...128,540,920
Ensembl chr10:128,533,808...128,540,900
JBrowse link
G Sin3a transcriptional regulator, SIN3A (yeast) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:56,979,271...57,035,652
Ensembl chr 9:56,979,324...57,035,650
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:150,268,544...150,325,686
Ensembl chr 1:150,268,589...150,325,686
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in
acts_upstream_of_or_within
IDA
IMP
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
UniProt
MGI
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr10:127,927,453...127,965,172
Ensembl chr10:127,927,446...127,965,172
JBrowse link
G Bend3 BEN domain containing 3 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr10:43,355,130...43,391,413
Ensembl chr10:43,354,827...43,391,392
JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:105,380,937...105,386,592
Ensembl chr 7:105,380,937...105,386,592
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IDA (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165) UniProt PMID:12198165 PMID:16085498 MGI:3587127 MGI:3852313 NCBI chr 8:81,426,572...81,466,088
Ensembl chr 8:81,425,136...81,466,126
JBrowse link
G Suv39h1 suppressor of variegation 3-9 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:7,927,410...7,940,999
Ensembl chr  X:7,927,410...7,940,999
JBrowse link
G Ubtf upstream binding transcription factor, RNA polymerase I acts_upstream_of_or_within IMP (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr11:102,195,386...102,214,738
Ensembl chr11:102,195,386...102,210,568
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lmntd2 lamin tail domain containing 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:140,789,903...140,795,617
Ensembl chr 7:140,789,905...140,793,993
JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:76,117,195...76,127,640
Ensembl chr15:76,115,374...76,127,641
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:46,640,144...46,658,162
Ensembl chr 7:46,640,144...46,658,159
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine (K)-specific demethylase 1A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:136,277,844...136,330,127
Ensembl chr 4:136,277,851...136,330,034
JBrowse link
G L3mbtl3 L3MBTL3 histone methyl-lysine binding protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:26,150,361...26,252,426
Ensembl chr10:26,150,366...26,251,967
JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669
JBrowse link
G Samd1 sterile alpha motif domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:84,724,145...84,727,044
Ensembl chr 8:84,724,130...84,727,038
JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within IMP (MGI:5528755|PMID:24036311) MGI PMID:24036311 MGI:5528755 NCBI chr 7:110,628,158...110,655,584
Ensembl chr 7:110,628,158...110,655,584
JBrowse link
G Dppa3 developmental pluripotency-associated 3 involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267)
GO_Central
UniProt
PMID:17143267 PMID:21873635 PMID:22722204 MGI:5432962 MGI:5447615 MGI:6201960 NCBI chr 6:122,603,383...122,607,230
Ensembl chr 6:122,603,369...122,607,231
JBrowse link
G H19 H19, imprinted maternally expressed transcript acts_upstream_of_or_within IMP (MGI:1096753|PMID:9294195) MGI PMID:9294195 MGI:1096753 NCBI chr 7:142,129,267...142,131,883
Ensembl chr 7:142,129,266...142,131,880
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IDA (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr 3:32,451,203...32,520,256
Ensembl chr 3:32,451,820...32,522,635
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within IMP (MGI:5559953|PMID:24291790) MGI PMID:24291790 MGI:5559953 NCBI chr10:62,640,349...62,723,242
Ensembl chr10:62,640,349...62,744,775
JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within IMP (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 7:12,758,079...12,764,959
Ensembl chr 7:12,733,041...12,764,962
JBrowse link
G Zfp42 zinc finger protein 42 acts_upstream_of_or_within IMP (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chr 8:43,748,104...43,760,046
Ensembl chr 8:43,748,100...43,760,017
JBrowse link
G Zfp445 zinc finger protein 445 involved_in IDA
ISO
IGI
(MGI:6284037|PMID:30602440) UniProt
MGI
PMID:30602440 GO_REF:0000096 MGI:4834177 MGI:6284037 NCBI chr 9:122,677,975...122,715,916
Ensembl chr 9:122,673,594...122,695,071
JBrowse link
G Zfp57 zinc finger protein 57 involved_in IGI (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chr17:37,307,060...37,326,196
Ensembl chr17:37,312,055...37,321,527
JBrowse link
regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1a bromodomain adjacent to zinc finger domain 1A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:54,939,774...55,061,155
Ensembl chr12:54,939,774...55,061,133
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in IGI (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chr11:101,081,941...101,117,289
Ensembl chr11:101,081,941...101,117,289
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:47,507,208...47,572,309
Ensembl chr 6:47,507,073...47,572,275
JBrowse link
G H3f3a H3.3 histone A acts_upstream_of_or_within IGI (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr 1:180,630,125...180,641,170
Ensembl chr 1:180,628,397...180,641,508
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within IGI (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr11:115,912,787...115,921,313
Ensembl chr11:115,912,738...115,918,788
JBrowse link
G Hat1 histone aminotransferase 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 2:71,219,604...71,271,966
Ensembl chr 2:71,219,302...71,271,966
JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IMP (MGI:5584328|PMID:24735877) BHF-UCL PMID:24735877 MGI:5584328 NCBI chr 2:51,962,725...52,016,781
Ensembl chr 2:51,962,844...52,012,395
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:81,457,621...81,463,631
Ensembl chr10:81,457,619...81,463,631
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28749
    cellular process 17698
      cellular component organization or biogenesis 6722
        cellular component organization 6529
          chromatin organization 612
            chromatin assembly 191
              DNA replication-dependent chromatin assembly 22
              DNA replication-independent chromatin assembly + 27
              co-transcriptional chromatin reassembly 0
              heterochromatin assembly + 93
              nucleosome assembly + 97
              regulation of chromatin assembly + 36
Path 2
Term Annotations click to browse term
  biological_process 28749
    cellular process 17698
      cellular component organization or biogenesis 6722
        cellular component organization 6529
          organelle organization 3964
            chromosome organization 1040
              chromatin organization 612
                chromatin assembly 191
                  DNA replication-dependent chromatin assembly 22
                  DNA replication-independent chromatin assembly + 27
                  co-transcriptional chromatin reassembly 0
                  heterochromatin assembly + 93
                  nucleosome assembly + 97
                  regulation of chromatin assembly + 36
paths to the root