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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin assembly
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Accession:GO:0031497 term browser browse the term
Definition:The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus.
Synonyms:exact_synonym: establishment of chromatin architecture
 broad_synonym: chromatin maintenance



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chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDAN1 codanin 1 involved_in ISO (PMID:22407294) UniProt PMID:22407294 NCBI chr30:9,656,408...9,668,898
Ensembl chr30:9,656,871...9,668,653
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:56,172,399...56,185,993
Ensembl chr 5:56,172,446...56,185,932
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in ISO (PMID:11691835) ComplexPortal PMID:11691835 NCBI chr21:20,968,356...21,124,308
Ensembl chr21:20,968,193...21,119,642
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:11691835) ComplexPortal PMID:11691835 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPP centromere protein P involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 1:98,801,384...99,019,371
Ensembl chr 1:98,799,939...99,019,334
JBrowse link
G HJURP Holliday junction recognition protein involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr25:45,215,165...45,230,603
Ensembl chr25:45,215,380...45,230,547
JBrowse link
G ITGB3BP integrin subunit beta 3 binding protein involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:46,645,858...46,716,170
Ensembl chr 5:46,681,412...46,701,509
JBrowse link
G MIS18A MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:5438906|PMID:22516971)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:22516971 MGI:5438906 NCBI chr31:27,025,657...27,039,001
Ensembl chr31:27,025,709...27,039,028
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G OIP5 Opa interacting protein 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:8,377,407...8,396,222
Ensembl chr30:8,381,395...8,396,096
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in ISO (MGI:3687778|PMID:10615135) UniProt PMID:10615135 MGI:3687778 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196)
(MGI:3611125|PMID:16322236)
MGI PMID:16322236 PMID:17938196 MGI:3611125 MGI:3768461 NCBI chr17:19,489,524...19,563,074
Ensembl chr17:19,492,193...19,563,902
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chr24:22,096,386...22,123,378
Ensembl chr24:22,096,349...22,122,900
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:68,901,339...68,936,473
Ensembl chr 2:68,901,651...68,936,186
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
G KMT2B lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chr 1:116,894,024...116,913,464
Ensembl chr 1:116,893,074...116,913,472
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 involved_in ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chr 1:21,232,260...21,283,687
Ensembl chr 1:21,235,967...21,283,346
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr20:57,296,713...57,312,988
Ensembl chr20:57,296,713...57,307,110
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:48,398,615...48,406,889 JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IEA InterPro GO_REF:0000002 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G H3C1 H3 clustered histone 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:23,975,775...23,977,803
Ensembl chr35:23,977,201...23,977,611
JBrowse link
G H3C12 H3 clustered histone 12 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,058,040...25,060,132
Ensembl chr35:25,059,288...25,059,698
JBrowse link
G H3C2 H3 clustered histone 2 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:23,989,431...23,989,871 JBrowse link
G H3C7 H3 clustered histone 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:24,174,818...24,177,957
Ensembl chr35:24,177,521...24,177,931
JBrowse link
G H4-16 H4 histone 16 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C12 H4 clustered histone 12 involved_in ISO (PMID:14718166) UniProt PMID:14718166
G H4C13 H4 clustered histone 13 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C4 H4 clustered histone 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:24,121,320...24,124,986 JBrowse link
G H4C8 H4 clustered histone 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:24,174,401...24,194,848
Ensembl chr27:31,840,011...31,840,322
Ensembl chr17:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
JBrowse link
G H4C9 H4 clustered histone 9 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr36:16,310,269...16,378,029
Ensembl chr36:16,310,710...16,378,017
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:4,171,525...4,180,666
Ensembl chr 8:4,171,527...4,181,151
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3694318|PMID:16728391)
GO_Central
UniProt
PMID:16728391 PMID:21873635 MGI:3694318 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:48,398,615...48,406,889 JBrowse link
G ATRX ATRX chromatin remodeler involved_in ISO (PMID:22391447) UniProt PMID:22391447 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G CABIN1 calcineurin binding protein 1 involved_in IEA
IBA
(PMID:21873635) InterPro
InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr26:28,366,264...28,517,570
Ensembl chr26:28,366,265...28,517,656
JBrowse link
G H3-3A H3.3 histone A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G H4-16 H4 histone 16 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C12 H4 clustered histone 12 involved_in ISO (PMID:14718166) UniProt PMID:14718166
G H4C13 H4 clustered histone 13 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C4 H4 clustered histone 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:24,121,320...24,124,986 JBrowse link
G H4C8 H4 clustered histone 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:24,174,401...24,194,848
Ensembl chr27:31,840,011...31,840,322
Ensembl chr17:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
JBrowse link
G H4C9 H4 clustered histone 9 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr36:16,310,269...16,378,029
Ensembl chr36:16,310,710...16,378,017
JBrowse link
G HIRA histone cell cycle regulator involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr26:29,777,984...29,867,992
Ensembl chr26:29,778,086...29,867,559
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:4,171,525...4,180,666
Ensembl chr 8:4,171,527...4,181,151
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
G UBN1 ubinuclein 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:36,542,266...36,581,789
Ensembl chr 6:36,544,405...36,581,797
JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2652932|PMID:12601169) Ensembl
MGI
PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343
JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr18:46,860,636...46,861,697 JBrowse link
G CTCF CCCTC-binding factor involved_in ISO (PMID:17827499) GO_Central PMID:17827499 NCBI chr 5:81,808,512...81,863,811
Ensembl chr 5:81,809,393...81,858,655
JBrowse link
G DNMT3L DNA methyltransferase 3 like acts_upstream_of_or_within ISO (MGI:3663953|PMID:16920095) MGI PMID:16920095 MGI:3663953 NCBI chr31:38,099,100...38,111,432 JBrowse link
G GNAS GNAS complex locus acts_upstream_of_or_within ISO (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr24:43,643,409...43,658,641
Ensembl chr24:43,643,405...43,658,657
JBrowse link
G NDN necdin, MAGE family member involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1345919|PMID:10508517) Ensembl
Ensembl
MGI
PMID:10508517 GO_REF:0000107 MGI:1345919 NCBI chr 3:36,313,977...36,315,661
Ensembl chr 3:36,314,104...36,315,081
JBrowse link
G ZDBF2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chr37:14,867,344...14,897,552
Ensembl chr37:14,871,575...14,894,047
JBrowse link
G ZFP57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chr35:26,267,358...26,269,429 JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 involved_in ISO (PMID:19666599) UniProt PMID:19666599 NCBI chr30:7,609,087...7,638,880
Ensembl chr30:7,613,345...7,638,880
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr10:834,018...868,817
Ensembl chr10:836,465...863,874
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:10,818,232...10,828,473
Ensembl chr 2:10,818,232...10,833,613
JBrowse link
G CBX3 chromobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:39,510,694...39,520,796
Ensembl chr14:39,510,112...39,519,809
JBrowse link
G CTBP1 C-terminal binding protein 1 involved_in ISO (PMID:21102443) BHF-UCL PMID:21102443 NCBI chr 3:91,385,733...91,400,252
Ensembl chr 3:91,379,049...91,400,656
JBrowse link
G EED embryonic ectoderm development involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:13,260,062...13,289,511
Ensembl chr21:13,260,002...13,289,337
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:3820717 NCBI chr 9:20,271,729...20,292,918
Ensembl chr 9:20,264,552...20,290,712
JBrowse link
G H1-0 H1.0 linker histone involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:26,827,748...26,829,909
Ensembl chr10:26,829,089...26,829,673
JBrowse link
G H2AB1 H2A.B variant histone 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:122,910,412...122,913,373
Ensembl chr  X:122,910,968...122,913,382
JBrowse link
G H2AC1 H2A clustered histone 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:23,677,141...23,677,728
Ensembl chr35:23,677,318...23,677,713
JBrowse link
G H2AC11 H2A clustered histone 11 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,544,024...24,544,645
Ensembl chr35:24,544,083...24,544,475
JBrowse link
G H2AC12 H2A clustered histone 12 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,558,456...24,559,356
Ensembl chr35:24,558,493...24,558,879
JBrowse link
G H2AC13 H2A clustered histone 13 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,000,243...25,001,749
Ensembl chr35:25,000,401...25,000,793
JBrowse link
G H2AC14 H2A clustered histone 14 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,004,598...25,006,416
Ensembl chr35:25,005,826...25,006,212
JBrowse link
G H2AC15 H2A clustered histone 15 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,030,215...25,031,023
Ensembl chr35:25,030,551...25,030,940
JBrowse link
G H2AC19 H2A clustered histone 19 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:59,156,821...59,157,523
Ensembl chr17:59,147,111...59,147,503
JBrowse link
G H2AC20 H2A clustered histone 20 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:59,175,488...59,176,178 JBrowse link
G H2AC21 H2A clustered histone 21 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:59,176,217...59,176,960
Ensembl chr17:59,176,251...59,176,643
JBrowse link
G H2AC5 H2A clustered histone 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,001,879...24,003,169
Ensembl chr35:24,001,900...24,002,292
JBrowse link
G H2AC6 H2A clustered histone 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,066,960...24,075,002
Ensembl chr35:24,067,113...24,067,505
JBrowse link
G H2AC7 H2A clustered histone 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,124,913...24,127,382
Ensembl chr35:24,124,802...24,127,252
JBrowse link
G H2AJ H2A.J histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:31,835,433...31,836,150
Ensembl chr27:31,835,623...31,836,012
JBrowse link
G H2AW H2A.W histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:604,444...605,584
Ensembl chr14:604,505...604,897
JBrowse link
G H2AX H2A.X variant histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:14,765,625...14,766,590
Ensembl chr 5:14,766,126...14,766,557
JBrowse link
G H2AZ1 H2A.Z variant histone 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:21,889,890...21,892,165
Ensembl chr32:21,889,877...21,892,102
JBrowse link
G H2AZ2 H2A.Z variant histone 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635
G HELLS helicase, lymphoid specific acts_upstream_of_or_within ISO (MGI:3510059|PMID:15448183) MGI PMID:15448183 MGI:3510059 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HMGB1 high mobility group box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HOTAIR HOX transcript antisense RNA acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5528742|PMID:24075995) MGI
RNAcentral
PMID:24075995 GO_REF:0000115 MGI:5528742 NCBI chr27:1,296,506...1,300,023 JBrowse link
G KMT2D lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chr27:5,516,866...5,556,303
Ensembl chr27:5,521,804...5,553,490
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr24:31,238,787...31,266,062
Ensembl chr24:31,217,184...31,265,291
JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:21,057,935...21,087,097
Ensembl chr 4:21,057,947...21,086,730
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638) MGI
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G MORF4L1 mortality factor 4 like 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:58,127,152...58,149,709
Ensembl chr 3:58,127,669...58,193,005
JBrowse link
G MORF4L2 mortality factor 4 like 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:77,084,940...77,097,900
Ensembl chr  X:77,085,599...77,086,465
JBrowse link
G MSL3 MSL complex subunit 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:8,294,797...8,311,142
Ensembl chr  X:8,294,802...8,310,751
JBrowse link
G PCGF1 polycomb group ring finger 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:48,633,207...48,642,435
Ensembl chr17:48,633,332...48,635,554
JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:23,488,862...23,499,769
Ensembl chr 9:23,488,857...23,499,549
JBrowse link
G PCGF6 polycomb group ring finger 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:15,697,707...15,733,177
Ensembl chr28:15,605,040...15,733,097
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:67,757,779...67,760,417
Ensembl chr11:67,758,918...67,760,374
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,856,277...35,914,096
Ensembl chr 9:35,856,765...35,913,884
JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr22:3,061,621...3,204,625
Ensembl chr22:3,063,239...3,257,726
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:12,981,852...13,006,049
Ensembl chr  X:12,981,860...13,006,045
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:15469825) BHF-UCL PMID:15469825 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3653583|PMID:16678107) ComplexPortal PMID:16678107 MGI:3653583 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) GO_Central PMID:26109053 NCBI chr21:41,021,317...41,042,955
Ensembl chr21:41,023,629...41,042,492
JBrowse link
G TNP1 transition protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr37:23,742,875...23,743,417
Ensembl chr37:23,727,538...23,743,365
JBrowse link
G TNP1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:11,167,286...11,296,817
Ensembl chr12:11,167,346...11,294,911
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM172A family with sequence similarity 172 member A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:15,281,442...15,695,303
Ensembl chr 3:15,281,448...15,694,715
JBrowse link
G ZNFX1 zinc finger NFX1-type containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:35,932,037...35,954,170
Ensembl chr24:35,932,523...35,954,170
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (MGI:5532809|PMID:23754746) UniProt PMID:23754746 MGI:5532809 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr27:37,064,107...37,073,791
Ensembl chr27:37,064,080...37,073,789
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISO (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chr27:37,102,728...37,114,084
Ensembl chr27:37,103,016...37,114,556
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 involved_in ISO (PMID:21496894) UniProt PMID:21496894 NCBI chr 4:19,759,661...19,898,345
Ensembl chr 4:19,768,137...19,889,907
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in ISO (PMID:20129925) UniProt PMID:20129925 NCBI chr 1:98,188,014...98,253,930
Ensembl chr 1:98,188,826...98,254,411
JBrowse link
G PHF8 PHD finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:45,635,204...45,741,850
Ensembl chr  X:45,571,840...46,081,994
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B involved_in ISO (PMID:20538007) UniProt PMID:20538007 NCBI chr11:55,230,017...55,272,744
Ensembl chr11:55,243,854...55,350,194
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11897662) MGI
Ensembl
Ensembl
PMID:11897662 GO_REF:0000107 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:2675150 NCBI chr20:48,398,615...48,406,889 JBrowse link
G ATRX ATRX chromatin remodeler involved_in ISO (PMID:20651253) UniProt PMID:20651253 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G BAZ1A bromodomain adjacent to zinc finger domain 1A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:13,604,694...13,694,508
Ensembl chr 8:13,605,182...13,693,847
JBrowse link
G BRD2 bromodomain containing 2 involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr12:2,534,034...2,546,029
Ensembl chr12:2,534,034...2,546,029
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G CHRAC1 chromatin accessibility complex subunit 1 involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chr13:35,162,189...35,164,286
Ensembl chr13:35,161,767...35,164,101
JBrowse link
G DAXX death domain associated protein involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr12:2,755,960...2,760,687
Ensembl chr12:2,755,960...2,761,340
JBrowse link
G DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:23,820,714...23,825,624
Ensembl chr 4:23,821,304...23,825,484
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:107,814,402...107,821,107
Ensembl chr 1:107,815,063...107,820,858
JBrowse link
G H1-0 H1.0 linker histone involved_in IEA InterPro GO_REF:0000002 NCBI chr10:26,827,748...26,829,909
Ensembl chr10:26,829,089...26,829,673
JBrowse link
G H1-12 H1.12 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr35:24,121,918...24,124,436 JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr35:24,091,950...24,092,694 JBrowse link
G H1-5 H1.5 linker histone, cluster member involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr35:25,045,883...25,046,775
Ensembl chr35:25,046,023...25,046,703
JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
G H1-8 H1.8 linker histone involved_in IEA InterPro GO_REF:0000002 NCBI chr20:5,614,822...5,619,136
Ensembl chr20:5,617,001...5,624,352
JBrowse link
G H1-9 H1.9 linker histone involved_in IEA InterPro GO_REF:0000002 Ensembl chr 9:26,169,774...26,170,316 JBrowse link
G H2AB1 H2A.B variant histone 1 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:122,910,412...122,913,373
Ensembl chr  X:122,910,968...122,913,382
JBrowse link
G H2BC1 H2B clustered histone 1 acts_upstream_of_or_within
involved_in
ISO (MGI:3702345|PMID:17261847)
(MGI:5502464|PMID:23884607)
MGI
UniProt
PMID:17261847 PMID:23884607 MGI:3702345 MGI:5502464 NCBI chr35:23,677,952...23,678,432 JBrowse link
G H2BC13 H2B clustered histone 13 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:24,999,666...25,000,124
Ensembl chr35:24,999,692...25,000,072
JBrowse link
G H2BC14 H2B clustered histone 14 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:25,006,472...25,035,326
Ensembl chr35:25,006,510...25,006,890
JBrowse link
G H2BC15 H2B clustered histone 15 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:25,031,173...25,035,326
Ensembl chr35:25,031,264...25,031,644
JBrowse link
G H2BC18 H2B clustered histone 18 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr17:59,093,578...59,120,934 JBrowse link
G H2BC2 H2B clustered histone 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:23,690,580...23,691,133
Ensembl chr35:23,690,707...23,691,090
JBrowse link
G H2BC25 H2B clustered histone 25 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,144,778...24,155,922 JBrowse link
G H2BC4 H2B clustered histone 4 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:24,062,068...24,066,934
Ensembl chr35:24,066,399...24,066,779
JBrowse link
G H2BC8 H2B clustered histone 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:24,130,229...24,131,736
Ensembl chr35:24,131,296...24,131,676
JBrowse link
G H2BC9 H2B clustered histone 9 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:24,178,907...24,179,379
Ensembl chr35:24,178,933...24,179,313
JBrowse link
G H2BU1 H2B.U histone 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:603,716...604,222
Ensembl chr14:603,816...604,196
JBrowse link
G H2BU2 H2B.U histone 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:596,292...599,815
Ensembl chr14:599,408...599,788
JBrowse link
G H2BW1 H2B.W histone 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:77,312,494...77,339,851
Ensembl chr  X:77,312,498...77,340,383
JBrowse link
G H3-3A H3.3 histone A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G H3-4 H3.4 histone involved_in ISO (PMID:20498094)
(PMID:25615412)
UniProt PMID:20498094 PMID:25615412 NCBI chr14:627,178...627,587
Ensembl chr14:627,190...627,581
JBrowse link
G H3C1 H3 clustered histone 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:23,975,775...23,977,803
Ensembl chr35:23,977,201...23,977,611
JBrowse link
G H3C12 H3 clustered histone 12 involved_in ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:25,058,040...25,060,132
Ensembl chr35:25,059,288...25,059,698
JBrowse link
G H3C13 H3 clustered histone 13 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr17:59,121,020...59,129,410
Ensembl chr17:59,121,976...59,122,386
JBrowse link
G H3C14 H3 clustered histone 14 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr17:59,145,128...59,146,186
Ensembl chr17:59,145,650...59,146,057
JBrowse link
G H3C2 H3 clustered histone 2 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:23,989,431...23,989,871 JBrowse link
G H3C7 H3 clustered histone 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:24,174,818...24,177,957
Ensembl chr35:24,177,521...24,177,931
JBrowse link
G H4-16 H4 histone 16 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C12 H4 clustered histone 12 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4C13 H4 clustered histone 13 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C4 H4 clustered histone 4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:24,121,320...24,124,986 JBrowse link
G H4C7 H4 clustered histone 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr35:24,174,554...24,174,829 JBrowse link
G H4C8 H4 clustered histone 8 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr35:24,174,401...24,194,848
Ensembl chr27:31,840,011...31,840,322
Ensembl chr17:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
JBrowse link
G H4C9 H4 clustered histone 9 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HMGB2 high mobility group box 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 2:78,164,239...78,203,032
Ensembl chr 2:78,164,173...78,201,555
JBrowse link
G KAT6A lysine acetyltransferase 6A involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr16:23,604,629...23,717,047
Ensembl chr16:23,604,200...23,724,252
JBrowse link
G KAT6B lysine acetyltransferase 6B involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:25,131,580...25,303,355
Ensembl chr 4:25,131,844...25,301,825
JBrowse link
G LOC100685886 protein SET-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:53,141,741...53,142,675 JBrowse link
G LOC403555 SET translocation involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr  X:91,851,844...91,869,284 JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IEA UniProt
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IEA UniProt
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 4:21,057,935...21,087,097
Ensembl chr 4:21,057,947...21,086,730
JBrowse link
G MCM2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:2156014 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in ISO (PMID:21981917) UniProt PMID:21981917 NCBI chr 6:37,759,233...37,784,224
Ensembl chr 6:37,761,497...37,793,290
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 involved_in IEA
IBA
(PMID:21873635) InterPro
InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:19,141,803...19,175,576
Ensembl chr15:19,143,284...19,175,581
JBrowse link
G NAP1L2 nucleosome assembly protein 1 like 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr  X:57,085,962...57,088,235
Ensembl chr  X:57,086,769...57,088,157
JBrowse link
G NAP1L3 nucleosome assembly protein 1 like 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr  X:69,231,981...69,233,827
Ensembl chr  X:69,232,078...69,233,499
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr18:46,910,366...46,946,710
Ensembl chr18:46,911,278...46,945,525
JBrowse link
G NAP1L5 nucleosome assembly protein 1 like 5 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr32:11,956,795...11,958,754
Ensembl chr32:11,958,122...11,958,658
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) UniProt PMID:25615412 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G NPM1 nucleophosmin 1 involved_in ISO (PMID:11602260) UniProt PMID:11602260 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G PADI4 peptidyl arginine deiminase 4 involved_in ISO (MGI:5545819|PMID:24463520) UniProt PMID:24463520 MGI:5545819 NCBI chr 2:80,912,814...80,942,767
Ensembl chr 2:80,905,391...80,993,973
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:67,757,779...67,760,417
Ensembl chr11:67,758,918...67,760,374
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:20,968,356...21,124,308
Ensembl chr21:20,968,193...21,119,642
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) UniProt PMID:24526689 NCBI chr26:18,308,065...18,345,903
Ensembl chr26:18,308,733...18,345,353
JBrowse link
G SET SET nuclear proto-oncogene involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 9:54,896,464...54,907,698 JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:37,076,318...37,170,664
Ensembl chr 1:37,077,949...37,163,041
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G SMYD3 SET and MYND domain containing 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5500979|PMID:23752591) MGI
Ensembl
Ensembl
PMID:23752591 GO_REF:0000107 MGI:5500979 NCBI chr 7:36,561,080...37,250,336
Ensembl chr 7:36,565,901...37,250,578
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:41,021,317...41,042,955
Ensembl chr21:41,023,629...41,042,492
JBrowse link
G TSPYL1 TSPY like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:71,933,904...71,937,508
Ensembl chr12:71,935,792...71,937,285
JBrowse link
G TSPYL2 TSPY like 2 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr  X:45,001,112...45,008,023
Ensembl chr  X:45,001,100...45,007,869
JBrowse link
G TSPYL4 TSPY like 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:71,916,682...71,918,481 JBrowse link
G TSPYL5 TSPY like 5 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr29:41,500,395...41,503,975
Ensembl chr29:41,503,312...41,503,956
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V involved_in ISO (PMID:18772885) UniProt PMID:18772885 NCBI chr 5:39,568,115...39,582,900
Ensembl chr 5:39,567,790...39,582,897
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G H3-3A H3.3 histone A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5694896|PMID:26159997) Ensembl
Ensembl
MGI
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:27043296) UniProt PMID:27043296 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:32,082,615...32,194,954
Ensembl chr27:32,086,675...32,177,364
JBrowse link
G DNMT1 DNA methyltransferase 1 involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:28581500), (PMID:29211708)
(MGI:6271895|PMID:29728365)
UniProt PMID:28581500 PMID:29211708 PMID:29728365 MGI:6271895 NCBI chr26:23,951,704...23,993,620
Ensembl chr26:23,953,130...23,992,431
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:18,392,706...18,443,241
Ensembl chr25:18,392,409...18,443,241
JBrowse link
G PPHLN1 periphilin 1 involved_in ISO (PMID:28581500) UniProt PMID:28581500 NCBI chr27:11,445,893...11,590,168
Ensembl chr27:11,443,394...11,590,107
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:16,829,611...16,856,960
Ensembl chr27:16,829,968...16,839,166
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr17:60,035,819...60,069,721
Ensembl chr17:60,037,379...60,069,551
JBrowse link
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:2,263,990...2,319,249
Ensembl chr22:2,244,507...2,319,158
JBrowse link
G TASOR transcription activation suppressor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:33,665,231...33,713,264
Ensembl chr20:33,646,000...33,712,936
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in ISO (PMID:24623306)
(MGI:5440670|PMID:20164836)
UniProt PMID:20164836 PMID:24623306 MGI:5440670 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G ZNF304 zinc finger protein 304 involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chr 1:100,739,792...100,748,656
Ensembl chr 1:100,740,374...100,768,032
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:300,863...306,546
Ensembl chr10:300,903...305,438
JBrowse link
G SIN3A SIN3 transcription regulator family member A involved_in ISO (PMID:22783022) BHF-UCL PMID:22783022 NCBI chr30:38,231,844...38,306,665
Ensembl chr30:38,232,680...38,382,635
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in ISO (PMID:20407419) UniProt PMID:20407419 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A involved_in
acts_upstream_of_or_within
ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
UniProt
MGI
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr10:834,018...868,817
Ensembl chr10:836,465...863,874
JBrowse link
G BEND3 BEN domain containing 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
InterPro
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr12:64,302,403...64,324,396
Ensembl chr12:64,306,140...64,322,725
JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr21:29,907,555...29,917,142
Ensembl chr21:29,907,361...29,918,408
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165) UniProt PMID:12198165 PMID:16085498 MGI:3587127 MGI:3852313 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr  X:41,894,623...41,907,854
Ensembl chr  X:41,893,045...41,906,403
JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr 9:19,177,778...19,189,805
Ensembl chr 9:19,179,174...19,189,181
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LMNTD2 lamin tail domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:25,663,814...25,669,420
Ensembl chr18:25,663,814...25,668,768
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:41,021,317...41,042,955
Ensembl chr21:41,023,629...41,042,492
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM1A lysine demethylase 1A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:76,313,742...76,375,716
Ensembl chr 2:76,156,434...76,375,632
JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr 1:68,538,014...68,655,173
Ensembl chr 1:68,540,051...68,654,414
JBrowse link
G SAMD1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr20:48,427,935...48,430,703 JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5528755|PMID:24036311) Ensembl
Ensembl
MGI
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
JBrowse link
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267) UniProt PMID:17143267 PMID:22722204 MGI:5432962 MGI:5447615 NCBI chr27:37,114,192...37,196,434 JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:12,600,140...12,681,905
Ensembl chr34:12,600,233...12,675,910
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:5559953|PMID:24291790) MGI PMID:24291790 MGI:5559953 NCBI chr 4:19,759,661...19,898,345
Ensembl chr 4:19,768,137...19,889,907
JBrowse link
G TRIM28 tripartite motif containing 28 acts_upstream_of_or_within ISO (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G ZFP42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chr16:43,091,607...43,092,521
Ensembl chr16:43,091,607...43,092,371
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in ISO (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chr35:26,267,358...26,269,429 JBrowse link
G ZNF445 zinc finger protein 445 involved_in ISO (PMID:30602440)
(MGI:6284037|PMID:30602440)
UniProt PMID:30602440 MGI:6284037 NCBI chr23:1,906,958...1,940,340
Ensembl chr23:1,927,625...1,939,382
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DOT1L DOT1 like histone lysine methyltransferase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:56,805,030...56,868,771
Ensembl chr20:56,803,242...56,852,539
JBrowse link
G DYDC1 DPY30 domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:29,490,171...29,505,096
Ensembl chr 4:29,466,810...29,501,363
JBrowse link
G DYDC2 DPY30 domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:29,505,037...29,514,787
Ensembl chr 4:29,509,614...29,514,409
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chr 9:20,271,729...20,292,918
Ensembl chr 9:20,264,552...20,290,712
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,926,443...1,991,995
Ensembl chr16:1,925,956...1,991,838
JBrowse link
G H3-3A H3.3 histone A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5694896|PMID:26159997) Ensembl
Ensembl
MGI
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr36:16,310,269...16,378,029
Ensembl chr36:16,310,710...16,378,017
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:21847107) BHF-UCL PMID:21847107 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16442
    cellular process 15494
      cellular component organization or biogenesis 6205
        cellular component organization 6034
          chromatin organization 499
            chromatin assembly 200
              DNA replication-dependent chromatin assembly 20
              DNA replication-independent chromatin assembly + 25
              co-transcriptional chromatin reassembly 0
              heterochromatin assembly + 113
              nucleosome assembly + 89
              regulation of chromatin assembly + 31
Path 2
Term Annotations click to browse term
  biological_process 16442
    cellular process 15494
      cellular component organization or biogenesis 6205
        cellular component organization 6034
          organelle organization 3735
            chromosome organization 932
              chromatin organization 499
                chromatin assembly 200
                  DNA replication-dependent chromatin assembly 20
                  DNA replication-independent chromatin assembly + 25
                  co-transcriptional chromatin reassembly 0
                  heterochromatin assembly + 113
                  nucleosome assembly + 89
                  regulation of chromatin assembly + 31
paths to the root