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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin assembly
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Accession:GO:0031497 term browser browse the term
Definition:The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus.
Synonyms:exact_synonym: establishment of chromatin architecture
 broad_synonym: chromatin maintenance


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chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 codanin 1 involved_in ISO (PMID:22407294) UniProt PMID:22407294 NCBI chrNW_004955416:9,393,170...9,403,374
Ensembl chrNW_004955416:9,393,197...9,403,370
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chrNW_004955495:4,467,317...4,499,419
Ensembl chrNW_004955495:4,468,202...4,499,171
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chrNW_004955407:35,601,992...35,618,287
Ensembl chrNW_004955407:35,602,819...35,617,917
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339
JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor involved_in ISO (PMID:16322561) UniProt PMID:16322561 NCBI chrNW_004955486:9,750,969...9,763,622
Ensembl chrNW_004955486:9,751,053...9,767,104
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:11691835) ComplexPortal PMID:11691835 NCBI chrNW_004955414:14,084,812...14,212,162
Ensembl chrNW_004955414:14,084,812...14,212,156
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:11691835) ComplexPortal PMID:11691835 NCBI chrNW_004955471:12,206,462...12,240,219
Ensembl chrNW_004955471:12,203,318...12,237,333
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:16322561) UniProt PMID:16322561 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hjurp Holliday junction recognition protein involved_in ISO (PMID:19410544), (PMID:19410545) UniProt PMID:19410544 PMID:19410545 NCBI chrNW_004955453:2,323,018...2,335,090
Ensembl chrNW_004955453:2,322,446...2,334,588
JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within ISO (MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:5438906 NCBI chrNW_004955407:31,799,537...31,813,897
Ensembl chrNW_004955407:31,798,924...31,813,862
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in ISO (MGI:3687778|PMID:10615135) UniProt PMID:10615135 MGI:3687778 NCBI chrNW_004955495:1,465,529...1,505,379
Ensembl chrNW_004955495:1,465,480...1,505,462
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236)
(MGI:3768461|PMID:17938196)
MGI PMID:16322236 PMID:17938196 MGI:3611125 MGI:3768461 NCBI chrNW_004955469:7,264,431...7,367,059
Ensembl chrNW_004955469:7,269,952...7,367,059
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chrNW_004955422:28,380,595...28,427,012
Ensembl chrNW_004955422:28,380,591...28,421,301
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864
JBrowse link
G Hells helicase, lymphoid specific involved_in ISO (MGI:3573964|PMID:15647320) UniProt PMID:15647320 MGI:3573964 NCBI chrNW_004955507:995,389...1,034,852
Ensembl chrNW_004955507:990,429...1,034,852
JBrowse link
G Kmt2b lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chrNW_004955468:2,813,183...2,834,326
Ensembl chrNW_004955468:2,813,496...2,834,326
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 involved_in ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chrNW_004955402:38,761,668...38,829,830
Ensembl chrNW_004955402:38,767,419...38,830,204
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chrNW_004955495:6,385,449...6,388,911
Ensembl chrNW_004955495:6,336,367...6,389,056
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397
JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955436:1,635,397...1,640,989
Ensembl chrNW_004955436:1,635,399...1,645,075
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955495:4,467,317...4,499,419
Ensembl chrNW_004955495:4,468,202...4,499,171
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955407:35,601,992...35,618,287
Ensembl chrNW_004955407:35,602,819...35,617,917
JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955449:3,026,194...3,070,448
Ensembl chrNW_004955449:3,025,461...3,066,919
JBrowse link
G Ipo4 importin 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955409:36,214,704...36,223,714
Ensembl chrNW_004955409:36,214,704...36,223,714
JBrowse link
G LOC102006228 histone H3 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955465:13,338,289...13,339,268 JBrowse link
G LOC102027630 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955413:11,517,229...11,517,609
Ensembl chrNW_004955413:11,517,245...11,517,556
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in
acts_upstream_of_or_within
ISO (PMID:14718166)
(MGI:3694318|PMID:16728391)
UniProt PMID:14718166 PMID:16728391 MGI:3694318 NCBI chrNW_004955464:12,667,050...12,697,021
Ensembl chrNW_004955464:12,667,050...12,697,769
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036
JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955436:1,635,397...1,640,989
Ensembl chrNW_004955436:1,635,399...1,645,075
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651
JBrowse link
G Atrx ATRX chromatin remodeler involved_in ISO (PMID:22391447) UniProt PMID:22391447 NCBI chrNW_004955557:947,368...1,252,701
Ensembl chrNW_004955557:947,167...1,252,724
JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955455:8,162,365...8,312,932
Ensembl chrNW_004955455:8,162,315...8,312,909
JBrowse link
G H3f3a H3 histone, family 3A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398
JBrowse link
G H3f3b H3 histone, family 3B involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244
JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955449:3,026,194...3,070,448
Ensembl chrNW_004955449:3,025,461...3,066,919
JBrowse link
G Ipo4 importin 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955409:36,214,704...36,223,714
Ensembl chrNW_004955409:36,214,704...36,223,714
JBrowse link
G LOC102009660 protein HIRA involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955442:18,581,370...18,673,590
Ensembl chrNW_004955442:18,581,370...18,673,761
JBrowse link
G LOC102027630 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955413:11,517,229...11,517,609
Ensembl chrNW_004955413:11,517,245...11,517,556
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955464:12,667,050...12,697,021
Ensembl chrNW_004955464:12,667,050...12,697,769
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036
JBrowse link
G Ubn1 ubinuclein 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955442:12,627,530...12,654,159
Ensembl chrNW_004955442:12,627,530...12,654,159
JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein acts_upstream_of_or_within ISO (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chrNW_004955422:27,021,810...27,150,339
Ensembl chrNW_004955422:27,020,386...27,057,626
JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within ISO (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chrNW_004955442:16,845,728...16,898,301
Ensembl chrNW_004955442:16,843,152...16,898,430
JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chrNW_004955422:14,576,971...14,578,868 JBrowse link
G Ctcf CCCTC-binding factor involved_in ISO (PMID:17827499) GO_Central PMID:17827499 NCBI chrNW_004955484:9,041,226...9,092,924
Ensembl chrNW_004955484:9,042,524...9,064,927
JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within ISO (MGI:3663953|PMID:16920095) MGI PMID:16920095 MGI:3663953 NCBI chrNW_004955407:41,177,582...41,186,965 JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO (MGI:1345919|PMID:10508517) MGI PMID:10508517 MGI:1345919 NCBI chrNW_004955416:31,125,354...31,127,010
Ensembl chrNW_004955416:31,125,924...31,126,889
JBrowse link
G Zdbf2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chrNW_004955457:8,660,448...8,688,116 JBrowse link
G Zfp57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chrNW_004955583:151,338...154,827 JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bahd1 bromo adjacent homology domain containing 1 involved_in ISO (PMID:19666599) UniProt PMID:19666599 NCBI chrNW_004955416:7,376,794...7,388,577
Ensembl chrNW_004955416:7,361,847...7,388,647
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chrNW_004955458:4,149,610...4,186,647
Ensembl chrNW_004955458:4,151,886...4,170,641
JBrowse link
G Cbx3 chromobox 3 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chrNW_004955410:28,042,627...28,052,616
Ensembl chrNW_004955410:28,043,110...28,052,616
JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in ISO (PMID:21102443) BHF-UCL PMID:21102443 NCBI chrNW_004955514:630,168...652,817
Ensembl chrNW_004955514:626,645...652,817
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:3820717 NCBI chrNW_004955451:16,548,898...16,563,449
Ensembl chrNW_004955451:16,548,858...16,564,310
JBrowse link
G Hells helicase, lymphoid specific acts_upstream_of_or_within ISO (MGI:3510059|PMID:15448183) MGI PMID:15448183 MGI:3510059 NCBI chrNW_004955507:995,389...1,034,852
Ensembl chrNW_004955507:990,429...1,034,852
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:16901784) UniProt PMID:16901784 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:19158276) GO_Central PMID:19158276 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339
JBrowse link
G Kmt2d lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chrNW_004955500:7,850,782...7,891,703
Ensembl chrNW_004955500:7,853,292...7,886,067
JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chrNW_004955445:13,621,007...13,645,809 JBrowse link
G LOC102010789 histone H1.0 involved_in ISO (PMID:19158276) UniProt PMID:19158276 NCBI chrNW_004955413:24,182,547...24,184,588 JBrowse link
G Mecp2 methyl-CpG binding protein 2 acts_upstream_of_or_within ISO (MGI:3530434|PMID:15608638) MGI PMID:15608638 MGI:3530434 NCBI chrNW_004955580:674,014...737,586
Ensembl chrNW_004955580:679,109...735,288
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in ISO (MGI:5551345|PMID:24135283) UniProt PMID:24135283 MGI:5551345 NCBI chrNW_004955451:1,878,110...1,915,794
Ensembl chrNW_004955451:1,878,629...1,915,654
JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chrNW_004955431:1,960,765...2,124,576
Ensembl chrNW_004955431:1,960,661...2,124,576
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:15469825) BHF-UCL PMID:15469825 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3653583|PMID:16678107) ComplexPortal PMID:16678107 MGI:3653583 NCBI chrNW_004955471:12,206,462...12,240,219
Ensembl chrNW_004955471:12,203,318...12,237,333
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) GO_Central PMID:26109053 NCBI chrNW_004955414:33,255,048...33,272,861
Ensembl chrNW_004955414:33,256,850...33,272,556
JBrowse link
G Tnp1 transition protein 1 involved_in ISO (PMID:11315969) UniProt PMID:11315969 NCBI chrNW_004955453:16,387,897...16,388,513
Ensembl chrNW_004955453:16,387,527...16,388,890
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (MGI:4431162|PMID:20080676) UniProt PMID:20080676 MGI:4431162 NCBI chrNW_004955437:8,678,212...8,780,700
Ensembl chrNW_004955437:8,677,801...8,782,120
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (MGI:5532809|PMID:23754746) UniProt PMID:23754746 MGI:5532809 NCBI chrNW_004955402:7,544,265...7,661,191
Ensembl chrNW_004955402:7,544,265...7,649,067
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISO (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chrNW_004955413:6,471,933...6,480,475
Ensembl chrNW_004955413:6,471,953...6,480,469
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in ISO (PMID:21496894) UniProt PMID:21496894 NCBI chrNW_004955425:20,767,406...20,857,165 JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in ISO (PMID:20129925) UniProt PMID:20129925 NCBI chrNW_004955515:4,428,068...4,471,642
Ensembl chrNW_004955515:4,429,957...4,471,641
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20208542) UniProt PMID:20208542 NCBI chrNW_004955475:1,105,619...1,230,758
Ensembl chrNW_004955475:1,105,619...1,230,756
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in ISO (PMID:20538007) UniProt PMID:20538007 NCBI chrNW_004955419:27,471,539...27,553,078
Ensembl chrNW_004955419:27,471,930...27,488,065
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) MGI PMID:11897662 NCBI chrNW_004955436:1,635,397...1,640,989
Ensembl chrNW_004955436:1,635,399...1,645,075
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:2675150 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651
JBrowse link
G Atrx ATRX chromatin remodeler involved_in ISO (PMID:20651253) UniProt PMID:20651253 NCBI chrNW_004955557:947,368...1,252,701
Ensembl chrNW_004955557:947,167...1,252,724
JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain 1A involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chrNW_004955409:26,136,961...26,231,960
Ensembl chrNW_004955409:26,149,665...26,231,180
JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO (PMID:18406326) UniProt PMID:18406326 NCBI chrNW_004955437:1,584,890...1,592,486
Ensembl chrNW_004955437:1,584,479...1,592,826
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chrNW_004955461:14,184,318...14,189,645
Ensembl chrNW_004955461:14,185,737...14,189,645
JBrowse link
G Daxx death domain associated protein involved_in ISO (PMID:20504901), (PMID:20651253)
(MGI:5567907|PMID:20651253)
UniProt PMID:20504901 PMID:20651253 MGI:5567907 NCBI chrNW_004955437:1,869,692...1,874,041
Ensembl chrNW_004955437:1,869,572...1,873,050
JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO (PMID:33857403) UniProt PMID:33857403 NCBI chrNW_004955437:18,485,975...18,491,561
Ensembl chrNW_004955437:18,485,975...18,491,608
JBrowse link
G Grwd1 glutamate rich WD repeat containing 1 involved_in ISO (PMID:27552915)
(PMID:25990725)
UniProt PMID:25990725 PMID:27552915 NCBI chrNW_004955559:2,033,743...2,039,493
Ensembl chrNW_004955559:2,029,414...2,039,493
JBrowse link
G H3f3a H3 histone, family 3A involved_in ISO (PMID:21636898)
(PMID:25615412)
UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398
JBrowse link
G H3f3b H3 histone, family 3B involved_in ISO (PMID:25615412)
(PMID:21636898)
UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339
JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004955403:33,656,314...33,659,115
Ensembl chrNW_004955403:33,656,300...33,659,428
JBrowse link
G LOC102006228 histone H3 involved_in ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004955465:13,338,289...13,339,268 JBrowse link
G LOC102021406 histone H2A involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chrNW_004955593:911,641...911,919 JBrowse link
G LOC102027630 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004955413:11,517,229...11,517,609
Ensembl chrNW_004955413:11,517,245...11,517,556
JBrowse link
G LOC102030314 histone H2B type 1-A involved_in
acts_upstream_of_or_within
ISO (PMID:24699735)
(MGI:3702345|PMID:17261847)
(MGI:5502464|PMID:23884607)
UniProt
MGI
PMID:17261847 PMID:23884607 PMID:24699735 MGI:3702345 MGI:5502464 NCBI chrNW_004955483:1,354,587...1,358,368 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:2156014 NCBI chrNW_004955429:16,012,345...16,027,151
Ensembl chrNW_004955429:16,012,173...16,027,277
JBrowse link
G Naa60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in ISO (PMID:21981917) UniProt PMID:21981917 NCBI chrNW_004955442:13,895,248...13,926,152
Ensembl chrNW_004955442:13,895,248...13,918,723
JBrowse link
G Nap1l4 nucleosome assembly protein 1 like 4 involved_in ISO (PMID:9325046)
(MGI:5897488|PMID:28366643)
UniProt PMID:9325046 PMID:28366643 MGI:5897488 NCBI chrNW_004955422:14,630,858...14,673,171
Ensembl chrNW_004955422:14,628,371...14,673,165
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) UniProt PMID:25615412 NCBI chrNW_004955464:12,667,050...12,697,021
Ensembl chrNW_004955464:12,667,050...12,697,769
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) UniProt PMID:11602260 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISO (MGI:5545819|PMID:24463520) UniProt PMID:24463520 MGI:5545819 NCBI chrNW_004955527:1,536,917...1,560,508
Ensembl chrNW_004955527:1,536,423...1,561,130
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chrNW_004955419:14,086,940...14,089,906
Ensembl chrNW_004955419:14,086,940...14,089,330
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:12972596)
(PMID:11691835)
UniProt
ComplexPortal
PMID:11691835 PMID:12972596 NCBI chrNW_004955414:14,084,812...14,212,162
Ensembl chrNW_004955414:14,084,812...14,212,156
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) UniProt PMID:24526689 NCBI chrNW_004955455:9,802,260...9,833,326
Ensembl chrNW_004955455:9,802,260...9,832,957
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:12972596), (PMID:14759371)
(PMID:11691835)
ComplexPortal PMID:11691835 PMID:12972596 PMID:14759371 NCBI chrNW_004955471:12,206,462...12,240,219
Ensembl chrNW_004955471:12,203,318...12,237,333
JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:5500979 NCBI chrNW_004955406:8,768,365...9,417,612
Ensembl chrNW_004955406:8,768,588...9,417,525
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (PMID:20484372) UniProt PMID:20484372 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:23378026) UniProt PMID:23378026 NCBI chrNW_004955414:33,255,048...33,272,861
Ensembl chrNW_004955414:33,256,850...33,272,556
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in ISO (PMID:18772885) UniProt PMID:18772885 NCBI chrNW_004955467:1,657,765...1,669,758 JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G H3f3a H3 histone, family 3A acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398
JBrowse link
G H3f3b H3 histone, family 3B acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244
JBrowse link
G Hells helicase, lymphoid specific involved_in ISO (MGI:3041983|PMID:14612388) UniProt PMID:14612388 MGI:3041983 NCBI chrNW_004955507:995,389...1,034,852
Ensembl chrNW_004955507:990,429...1,034,852
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27043296) UniProt PMID:27043296 NCBI chrNW_004955495:4,641,883...4,650,518
Ensembl chrNW_004955495:4,644,023...4,650,083
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO (PMID:27732843) UniProt PMID:27732843 NCBI chrNW_004955413:11,117,369...11,261,787
Ensembl chrNW_004955413:11,117,223...11,261,606
JBrowse link
G Dnmt1 DNA methyltransferase 1 involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chrNW_004955495:1,465,529...1,505,379
Ensembl chrNW_004955495:1,465,480...1,505,462
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:28581500), (PMID:29211708)
(MGI:6271895|PMID:29728365)
UniProt PMID:28581500 PMID:29211708 PMID:29728365 MGI:6271895 NCBI chrNW_004955455:5,124,737...5,164,495
Ensembl chrNW_004955455:5,124,737...5,164,495
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500 PMID:29211708 NCBI chrNW_004955497:518,462...546,748 JBrowse link
G Pphln1 periphilin 1 involved_in ISO (PMID:28581500) UniProt PMID:28581500 NCBI chrNW_004955500:1,744,968...1,892,056
Ensembl chrNW_004955500:1,806,658...1,892,056
JBrowse link
G Resf1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chrNW_004955505:3,684,848...3,709,624 JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (PMID:24623306), (PMID:27732843)
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
UniProt PMID:20164836 PMID:24623306 PMID:27732843 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chrNW_004955588:290,497...338,438
Ensembl chrNW_004955588:290,168...338,426
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500 PMID:29211708 NCBI chrNW_004955430:6,440,655...6,480,956
Ensembl chrNW_004955430:6,442,084...6,480,802
JBrowse link
G Trim28 tripartite motif containing 28 involved_in ISO (PMID:24623306)
(MGI:5440670|PMID:20164836)
UniProt PMID:20164836 PMID:24623306 MGI:5440670 NCBI chrNW_004955584:1,148,903...1,156,001 JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 involved_in ISO (PMID:20935635) UniProt PMID:20935635 NCBI chrNW_004955458:3,555,603...3,561,063
Ensembl chrNW_004955458:3,555,603...3,562,120
JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in ISO (PMID:22783022) BHF-UCL PMID:22783022 NCBI chrNW_004955450:2,804,551...2,870,450
Ensembl chrNW_004955450:2,808,130...2,870,450
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO (PMID:20407419) UniProt PMID:20407419 NCBI chrNW_004955406:24,742,525...24,805,989
Ensembl chrNW_004955406:24,742,525...24,805,989
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within
involved_in
ISO (MGI:4462332|PMID:20168299)
(MGI:3653583|PMID:16678107)
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
MGI
UniProt
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chrNW_004955458:4,149,610...4,186,647
Ensembl chrNW_004955458:4,151,886...4,170,641
JBrowse link
G Bend3 BEN domain containing 3 involved_in ISO (PMID:26100909) UniProt PMID:26100909 NCBI chrNW_004955411:32,346,573...32,384,796
Ensembl chrNW_004955411:32,345,577...32,384,796
JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chrNW_004955414:22,311,038...22,316,144
Ensembl chrNW_004955414:22,311,038...22,316,144
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165) UniProt PMID:12198165 PMID:16085498 MGI:3587127 MGI:3852313 NCBI chrNW_004955471:12,206,462...12,240,219
Ensembl chrNW_004955471:12,203,318...12,237,333
JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chrNW_004955543:258,479...271,128
Ensembl chrNW_004955543:258,479...272,473
JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chrNW_004955451:17,294,163...17,302,807
Ensembl chrNW_004955451:17,294,251...17,302,746
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp10 poly(ADP-ribose) polymerase family member 10 involved_in ISO (PMID:15674325) UniProt PMID:15674325 NCBI chrNW_004955454:2,644,718...2,651,962
Ensembl chrNW_004955454:2,645,003...2,651,604
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) UniProt PMID:26109053 NCBI chrNW_004955414:33,255,048...33,272,861
Ensembl chrNW_004955414:33,256,850...33,272,556
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine demethylase 1A involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chrNW_004955452:3,044,042...3,104,650
Ensembl chrNW_004955452:3,044,264...3,104,418
JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chrNW_004955436:10,900,521...11,014,259
Ensembl chrNW_004955436:10,920,075...11,013,520
JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
G Samd1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chrNW_004955415:32,789,937...32,791,421 JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (MGI:5528755|PMID:24036311) MGI PMID:24036311 MGI:5528755 NCBI chrNW_004955414:26,347,508...26,373,726
Ensembl chrNW_004955414:26,347,508...26,373,785
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:5559953|PMID:24291790) MGI PMID:24291790 MGI:5559953 NCBI chrNW_004955425:20,767,406...20,857,165 JBrowse link
G Trim28 tripartite motif containing 28 acts_upstream_of_or_within ISO (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chrNW_004955584:1,148,903...1,156,001 JBrowse link
G Zfp42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chrNW_004955403:21,222,129...21,227,341
Ensembl chrNW_004955403:21,222,138...21,227,341
JBrowse link
G Zfp57 ZFP57 zinc finger protein involved_in ISO (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chrNW_004955583:151,338...154,827 JBrowse link
G Znf445 zinc finger protein 445 involved_in ISO (PMID:30602440)
(MGI:6284037|PMID:30602440)
UniProt PMID:30602440 MGI:6284037 NCBI chrNW_004955420:26,972,008...26,995,063
Ensembl chrNW_004955420:26,986,101...26,991,678
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102008188 core histone macro-H2A.1 NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chrNW_004955408:30,497,531...30,550,095
Ensembl chrNW_004955408:30,497,531...30,550,118
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chrNW_004955451:16,548,898...16,563,449
Ensembl chrNW_004955451:16,548,858...16,564,310
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in ISO (PMID:9214638) ARUK-UCL PMID:9214638 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235
JBrowse link
G H3f3a H3 histone, family 3A acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398
JBrowse link
G H3f3b H3 histone, family 3B acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244
JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in ISO (MGI:5584328|PMID:24735877) BHF-UCL PMID:24735877 MGI:5584328 NCBI chrNW_004955440:16,977,710...17,047,809
Ensembl chrNW_004955440:16,979,042...17,041,748
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:21847107) BHF-UCL PMID:21847107 NCBI chrNW_004955495:4,641,883...4,650,518
Ensembl chrNW_004955495:4,644,023...4,650,083
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12182
    cellular process 11320
      cellular component organization or biogenesis 4934
        cellular component organization 4848
          chromatin organization 308
            chromatin assembly 111
              DNA replication-dependent chromatin assembly 10
              DNA replication-independent chromatin assembly + 15
              co-transcriptional chromatin reassembly 0
              heterochromatin assembly + 71
              nucleosome assembly + 33
              regulation of chromatin assembly + 28
Path 2
Term Annotations click to browse term
  biological_process 12182
    cellular process 11320
      cellular component organization or biogenesis 4934
        cellular component organization 4848
          organelle organization 2919
            chromosome organization 659
              chromatin organization 308
                chromatin assembly 111
                  DNA replication-dependent chromatin assembly 10
                  DNA replication-independent chromatin assembly + 15
                  co-transcriptional chromatin reassembly 0
                  heterochromatin assembly + 71
                  nucleosome assembly + 33
                  regulation of chromatin assembly + 28
paths to the root