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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.



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chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:28,592,673...28,661,799
Ensembl chr 7:28,592,673...28,661,765
JBrowse link
G Apex1 apurinic/apyrimidinic endonuclease 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:51,162,406...51,164,645
Ensembl chr14:51,162,425...51,164,596
JBrowse link
G Atoh1 atonal bHLH transcription factor 1 enables IDA (MGI:3578607|PMID:15788459) MGI PMID:15788459 MGI:3578607 NCBI chr 6:64,706,109...64,708,229
Ensembl chr 6:64,706,109...64,708,229
JBrowse link
G Atrx ATRX, chromatin remodeler enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:104,841,221...104,972,978
Ensembl chr  X:104,841,221...104,973,009
JBrowse link
G Bap1 Brca1 associated protein 1 enables IDA (MGI:5436339|PMID:22878500) MGI PMID:22878500 MGI:5436339 NCBI chr14:30,973,358...30,981,887
Ensembl chr14:30,973,407...30,981,901
JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 enables IDA (MGI:3695553|PMID:17125145) MGI PMID:17125145 MGI:3695553 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha enables IDA (MGI:6286426|PMID:25921091) MGI PMID:25921091 MGI:6286426 NCBI chr 7:34,818,718...34,821,353
Ensembl chr 7:34,818,718...34,821,353
JBrowse link
G Cebpb CCAAT/enhancer binding protein beta enables IDA (MGI:6286426|PMID:25921091) MGI PMID:25921091 MGI:6286426 NCBI chr 2:167,530,835...167,532,352
Ensembl chr 2:167,530,835...167,532,338
JBrowse link
G Clock clock circadian regulator enables IDA (MGI:5568183|PMID:24610784) UniProt PMID:24610784 MGI:5568183 NCBI chr 5:76,357,715...76,452,675
Ensembl chr 5:76,357,715...76,452,639
JBrowse link
G Crebbp CREB binding protein enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:3,899,198...4,031,864
Ensembl chr16:3,899,192...4,031,861
JBrowse link
G Ddx17 DEAD box helicase 17 enables IDA (MGI:6199024|PMID:29431742) MGI PMID:29431742 MGI:6199024 NCBI chr15:79,411,897...79,430,976
Ensembl chr15:79,411,937...79,430,942
JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:153,331,506...153,363,464
Ensembl chr 1:153,331,504...153,363,406
JBrowse link
G Eomes eomesodermin enables IDA (MGI:6220563|PMID:30186101) MGI PMID:30186101 MGI:6220563 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200
JBrowse link
G Ep300 E1A binding protein p300 enables IDA
IBA
ISO
(MGI:3796777|PMID:18458156)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
RGD
PMID:18458156 PMID:20702579 PMID:21873635 GO_REF:0000096 MGI:3796777 MGI:4417868 MGI:6201960 RGD:5128544 NCBI chr15:81,470,329...81,536,273
Ensembl chr15:81,469,552...81,536,278
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IDA
ISO
(MGI:3789777|PMID:18483221), (MGI:5576864|PMID:24137001) MGI PMID:18483221 PMID:24137001 GO_REF:0000119 MGI:3789777 MGI:4834177 MGI:5576864 NCBI chr 6:47,507,208...47,613,843
Ensembl chr 6:47,507,073...47,572,275
JBrowse link
G Foxc2 forkhead box C2 enables ISS
ISO
(MGI:87500|PMID:9169153) UniProt
MGI
PMID:9169153 GO_REF:0000119 MGI:4834177 MGI:87500 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
JBrowse link
G Foxo1 forkhead box O1 enables IDA (MGI:6278316|PMID:29320745) MGI PMID:29320745 MGI:6278316 NCBI chr 3:52,175,758...52,257,530
Ensembl chr 3:52,175,757...52,260,642
JBrowse link
G Foxo3 forkhead box O3 enables IDA (MGI:5572869|PMID:17521387) UniProt PMID:17521387 MGI:5572869 NCBI chr10:42,057,841...42,152,691
Ensembl chr10:42,057,837...42,152,751
JBrowse link
G Gata1 GATA binding protein 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:7,825,504...7,842,844
Ensembl chr  X:7,825,499...7,844,310
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 enables IDA (MGI:5465379|PMID:23201751) MGI PMID:23201751 MGI:5465379 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349
JBrowse link
G Grhl1 grainyhead like transcription factor 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:24,622,234...24,667,390
Ensembl chr12:24,622,282...24,667,390
JBrowse link
G Grhl2 grainyhead like transcription factor 2 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813
JBrowse link
G Grhl3 grainyhead like transcription factor 3 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:135,269,199...135,300,943
Ensembl chr 4:135,269,199...135,300,941
JBrowse link
G H1f0 H1.0 linker histone enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:78,912,412...78,914,704
Ensembl chr15:78,912,650...78,914,704
JBrowse link
G H1f1 H1.1 linker histone, cluster member enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:23,947,651...23,948,395
Ensembl chr13:23,947,649...23,948,389
JBrowse link
G H1f2 H1.2 linker histone, cluster member enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:23,922,790...23,923,514
Ensembl chr13:23,922,791...23,924,350
JBrowse link
G H1f3 H1.3 linker histone, cluster member enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:23,739,206...23,739,981
Ensembl chr13:23,737,436...23,744,860
JBrowse link
G H1f4 H1.4 linker histone, cluster member enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:23,805,760...23,806,541
Ensembl chr13:23,804,612...23,806,541
JBrowse link
G H1f5 H1.5 linker histone, cluster member enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:21,964,002...21,964,795
Ensembl chr13:21,964,053...21,964,795
JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:137,570,248...137,572,683
Ensembl chr 3:137,570,248...137,572,683
JBrowse link
G Hcfc1 host cell factor C1 enables IDA (MGI:5436339|PMID:22878500) MGI PMID:22878500 MGI:5436339 NCBI chr  X:72,986,400...73,011,430
Ensembl chr  X:72,986,398...73,009,963
JBrowse link
G Hdac2 histone deacetylase 2 enables IDA (MGI:3796777|PMID:18458156) MGI PMID:18458156 MGI:3796777 NCBI chr10:36,850,293...36,877,885
Ensembl chr10:36,850,540...36,877,885
JBrowse link
G Hdac3 histone deacetylase 3 enables IDA (MGI:3796777|PMID:18458156), (MGI:6479199|PMID:32467224) MGI PMID:18458156 PMID:32467224 MGI:3796777 MGI:6479199 NCBI chr18:38,070,024...38,088,073
Ensembl chr18:38,068,897...38,088,069
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:178,148,673...178,170,063
Ensembl chr 1:178,148,673...178,165,362
JBrowse link
G Hr lysine demethylase and nuclear receptor corepressor enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:70,789,644...70,810,988
Ensembl chr14:70,789,652...70,810,988
JBrowse link
G Hsf1 heat shock factor 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:76,361,562...76,385,355
Ensembl chr15:76,361,622...76,386,113
JBrowse link
G Hsf3 heat shock transcription factor 3 enables IDA (MGI:4441107|PMID:19864465) MGI PMID:19864465 MGI:4441107 NCBI chr  X:95,349,781...95,499,900
Ensembl chr  X:95,349,784...95,499,900
JBrowse link
G Insm1 insulinoma-associated 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:146,064,021...146,066,940
Ensembl chr 2:146,063,841...146,066,940
JBrowse link
G Jmjd1c jumonji domain containing 1C enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:66,932,189...67,092,105
Ensembl chr10:66,931,904...67,092,105
JBrowse link
G Kdm3a lysine (K)-specific demethylase 3A enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:71,565,954...71,609,963
Ensembl chr 6:71,565,956...71,609,974
JBrowse link
G Kdm3b KDM3B lysine (K)-specific demethylase 3B enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr18:34,910,061...34,972,423
Ensembl chr18:34,910,100...34,971,713
JBrowse link
G Kdm4d lysine (K)-specific demethylase 4D enables IDA (MGI:55267|PMID:6953429) MGI PMID:6953429 MGI:55267 NCBI chr 9:14,373,844...14,411,818
Ensembl chr 9:14,373,844...14,411,778
JBrowse link
G Kdm5a lysine demethylase 5A enables IDA (MGI:3789777|PMID:18483221) MGI PMID:18483221 MGI:3789777 NCBI chr 6:120,341,060...120,421,535
Ensembl chr 6:120,341,085...120,421,535
JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A enables IDA
IBA
(MGI:5506833|PMID:23658530)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:23658530 MGI:5506833 MGI:6201960 NCBI chr  X:18,027,101...18,147,061
Ensembl chr  X:18,028,814...18,146,175
JBrowse link
G Kdm6b KDM1 lysine (K)-specific demethylase 6B enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:69,289,334...69,311,188
Ensembl chr11:69,289,334...69,304,501
JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) enables IDA (MGI:6479199|PMID:32467224) MGI PMID:32467224 MGI:6479199 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466
JBrowse link
G Lemd2 LEM domain containing 2 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:27,408,574...27,426,228
Ensembl chr17:27,408,574...27,423,443
JBrowse link
G Lemd3 LEM domain containing 3 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:120,759,316...120,815,491
Ensembl chr10:120,759,318...120,815,237
JBrowse link
G Macroh2a1 macroH2A.1 histone enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174
JBrowse link
G Macroh2a2 macroH2A.2 histone enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:61,574,419...61,620,383
Ensembl chr10:61,574,444...61,619,926
JBrowse link
G Mecp2 methyl CpG binding protein 2 enables ISO MGI
RGD
PMID:9038338 GO_REF:0000096 MGI:4417868 RGD:1601325 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,129,296
JBrowse link
G Med1 mediator complex subunit 1 enables ISO MGI
RGD
PMID:20702579 GO_REF:0000096 MGI:4417868 RGD:5128544 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119
JBrowse link
G Mexis macrophage expressed LXRa(NR1H3)-dependent amplifier of Abca1 transcription lncRNA enables IMP (MGI:6199024|PMID:29431742) MGI PMID:29431742 MGI:6199024 NCBI chr 4:53,261,356...53,270,232
Ensembl chr 4:53,261,356...53,270,232
JBrowse link
G Myod1 myogenic differentiation 1 enables IDA (MGI:5608518|PMID:25085416) MGI PMID:25085416 MGI:5608518 NCBI chr 7:46,025,898...46,028,516
Ensembl chr 7:46,025,898...46,028,523
JBrowse link
G Myog myogenin enables IDA (MGI:5526919|PMID:22847234), (MGI:5608518|PMID:25085416) UniProt PMID:22847234 PMID:25085416 MGI:5526919 MGI:5608518 NCBI chr 1:134,217,742...134,220,286
Ensembl chr 1:134,217,727...134,220,286
JBrowse link
G Neurog3 neurogenin 3 enables IDA (MGI:3619850|PMID:16511571) UniProt PMID:16511571 MGI:3619850 NCBI chr10:61,968,869...61,970,542
Ensembl chr10:61,968,869...61,970,542
JBrowse link
G Nkap NFKB activating protein enables IDA (MGI:4838711|PMID:20610818) MGI PMID:20610818 MGI:4838711 NCBI chr  X:36,390,416...36,414,399
Ensembl chr  X:36,390,448...36,414,399
JBrowse link
G Notch1 notch 1 enables IDA (MGI:3718933|PMID:17658278) MGI PMID:17658278 MGI:3718933 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675
JBrowse link
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 enables IDA (MGI:6199024|PMID:29431742) MGI PMID:29431742 MGI:6199024 NCBI chr 7:44,199,040...44,204,928
Ensembl chr 7:44,199,040...44,203,375
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 enables IMP (MGI:6199024|PMID:29431742) MGI PMID:29431742 MGI:6199024 NCBI chr 2:91,014,406...91,033,189
Ensembl chr 2:91,014,406...91,033,179
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) enables IDA (MGI:5436339|PMID:22878500) MGI PMID:22878500 MGI:5436339 NCBI chr  X:100,683,617...100,727,957
Ensembl chr  X:100,683,666...100,727,957
JBrowse link
G Pax6 paired box 6 enables IDA (MGI:6220563|PMID:30186101) MGI PMID:30186101 MGI:6220563 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709
JBrowse link
G Per1 period circadian clock 1 enables IDA (MGI:5568183|PMID:24610784) UniProt PMID:24610784 MGI:5568183 NCBI chr11:68,985,934...69,000,791
Ensembl chr11:68,986,043...69,000,786
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 enables IDA (MGI:4881620|PMID:21035439) MGI PMID:21035439 MGI:4881620 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240
JBrowse link
G Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:62,440,889...62,443,305
Ensembl chr 4:62,440,886...62,443,305
JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 enables IDA (MGI:5548017|PMID:24268575) MGI PMID:24268575 MGI:5548017 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669
JBrowse link
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha enables IDA (MGI:3771455|PMID:17952069) MGI PMID:17952069 MGI:3771455 NCBI chr 5:51,611,591...52,273,316
Ensembl chr 5:51,611,592...51,725,068
JBrowse link
G Prdm14 PR domain containing 14 enables IDA (MGI:5548017|PMID:24268575) MGI PMID:24268575 MGI:5548017 NCBI chr 1:13,183,649...13,197,467
Ensembl chr 1:13,183,681...13,197,387
JBrowse link
G Rara retinoic acid receptor, alpha enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768
JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:5,686,993...5,698,162
Ensembl chr19:5,687,511...5,698,158
JBrowse link
G Runx2 runt related transcription factor 2 enables IDA (MGI:5297629|PMID:21930712) MGI PMID:21930712 MGI:5297629 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:45,071,320...45,084,817
Ensembl chr 7:45,071,184...45,087,520
JBrowse link
G Rxra retinoid X receptor alpha enables IDA (MGI:3771455|PMID:17952069), (MGI:6199024|PMID:29431742) MGI PMID:17952069 PMID:29431742 MGI:3771455 MGI:6199024 NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969
JBrowse link
G Rxrb retinoid X receptor beta enables IDA (MGI:6199024|PMID:29431742) MGI PMID:29431742 MGI:6199024 NCBI chr17:34,250,786...34,257,377
Ensembl chr17:34,250,786...34,257,373
JBrowse link
G Sbno1 strawberry notch 1 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:124,506,765...124,564,059
Ensembl chr 5:124,506,765...124,564,064
JBrowse link
G Sbno2 strawberry notch 2 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:79,892,826...79,941,942
Ensembl chr10:79,892,826...79,941,405
JBrowse link
G Sirt6 sirtuin 6 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:81,457,621...81,463,631
Ensembl chr10:81,457,619...81,463,631
JBrowse link
G Smad3 SMAD family member 3 enables IDA (MGI:3696631|PMID:16224064) BHF-UCL PMID:16224064 MGI:3696631 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276
JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 enables IDA (MGI:5548017|PMID:24268575) MGI PMID:24268575 MGI:5548017 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610
JBrowse link
G Srf serum response factor enables IDA (MGI:3796777|PMID:18458156) MGI PMID:18458156 MGI:3796777 NCBI chr17:46,857,764...46,869,194
Ensembl chr17:46,859,255...46,867,101
JBrowse link
G Stat3 signal transducer and activator of transcription 3 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables IDA
IBA
(MGI:3789777|PMID:18483221)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:18483221 PMID:21873635 MGI:3789777 MGI:6201960 NCBI chr11:79,883,932...79,924,949
Ensembl chr11:79,883,932...79,924,949
JBrowse link
G Tbr1 T-box brain transcription factor 1 enables IDA (MGI:6220563|PMID:30186101) MGI PMID:30186101 MGI:6220563 NCBI chr 2:61,633,228...61,644,458
Ensembl chr 2:61,633,274...61,644,458
JBrowse link
G Thra thyroid hormone receptor alpha enables IDA (MGI:3771455|PMID:17952069) MGI PMID:17952069 MGI:3771455 NCBI chr11:98,631,539...98,659,832
Ensembl chr11:98,631,464...98,659,832
JBrowse link
G Thrb thyroid hormone receptor beta enables IDA (MGI:3771455|PMID:17952069) MGI PMID:17952069 MGI:3771455 NCBI chr14:4,429,599...4,810,538
Ensembl chr14:4,431,611...4,809,435
JBrowse link
G Top1 topoisomerase (DNA) I enables ISO MGI
RGD
PMID:1332866 GO_REF:0000096 MGI:4417868 RGD:1580856 NCBI chr 2:160,487,901...160,564,684
Ensembl chr 2:160,487,808...160,564,684
JBrowse link
G Tox thymocyte selection-associated high mobility group box enables IDA
IBA
(MGI:5632052|PMID:25527292)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:25527292 MGI:5632052 MGI:6201960 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557
JBrowse link
G Tox2 TOX high mobility group box family member 2 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:163,045,047...163,166,092
Ensembl chr 2:163,045,045...163,166,090
JBrowse link
G Tox3 TOX high mobility group box family member 3 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:90,973,665...91,075,746
Ensembl chr 8:90,973,668...91,074,971
JBrowse link
G Tox4 TOX high mobility group box family member 4 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:52,516,603...52,532,966
Ensembl chr14:52,516,603...52,533,858
JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  Y:1,085,187...1,245,787
Ensembl chr  Y:1,096,861...1,245,759
JBrowse link
G Vax1 ventral anterior homeobox 1 enables IDA (MGI:3578573|PMID:15905411) MGI PMID:15905411 MGI:3578573 NCBI chr19:59,152,912...59,158,829
Ensembl chr19:59,154,619...59,158,488
JBrowse link
G Vax2 ventral anterior homeobox 2 enables IDA (MGI:3578573|PMID:15905411) MGI PMID:15905411 MGI:3578573 NCBI chr 6:83,688,221...83,715,295
Ensembl chr 6:83,688,246...83,715,295
JBrowse link
G Wbp2 WW domain binding protein 2 enables ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000119 MGI:4834177 MGI:6201960 NCBI chr11:115,969,397...115,977,821
Ensembl chr11:115,969,399...115,977,821
JBrowse link
G Wbp2nl WBP2 N-terminal like enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:82,183,126...82,198,848
Ensembl chr15:82,183,155...82,198,824
JBrowse link
G Xbp1 X-box binding protein 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893
JBrowse link
G Zfp125 zinc finger protein 125 enables IDA (MGI:6278316|PMID:29320745) MGI PMID:29320745 MGI:6278316 Ensembl chr12:20,948,575...20,952,660 JBrowse link
G Zic2 zinc finger protein of the cerebellum 2 enables IDA (MGI:4833763|PMID:20676059) UniProt PMID:20676059 MGI:4833763 NCBI chr14:122,712,796...122,717,740
Ensembl chr14:122,712,847...122,717,264
JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:106,351,135...106,409,554
Ensembl chr 8:106,363,200...106,409,554
JBrowse link
G Ctcfl CCCTC-binding factor like enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:172,935,402...172,961,318
Ensembl chr 2:172,935,402...172,961,318
JBrowse link
G Repin1 replication initiator 1 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:48,570,817...48,576,016
Ensembl chr 6:48,570,817...48,576,016
JBrowse link
G Zfp276 zinc finger protein (C2H2 type) 276 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:123,980,934...123,997,290
Ensembl chr 8:123,980,934...123,996,484
JBrowse link
G Zfp692 zinc finger protein 692 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:58,197,883...58,205,971
Ensembl chr11:58,197,895...58,205,453
JBrowse link
G Zfx zinc finger protein X-linked enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:93,118,237...93,194,250
Ensembl chr  X:93,118,237...93,167,308
JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1f0 H1.0 linker histone enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:78,912,412...78,914,704
Ensembl chr15:78,912,650...78,914,704
JBrowse link
G H1f1 H1.1 linker histone, cluster member enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,947,651...23,948,395
Ensembl chr13:23,947,649...23,948,389
JBrowse link
G H1f10 H1.10 linker histone enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:87,957,403...87,958,464
Ensembl chr 6:87,957,403...87,958,619
JBrowse link
G H1f2 H1.2 linker histone, cluster member enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,922,790...23,923,514
Ensembl chr13:23,922,791...23,924,350
JBrowse link
G H1f3 H1.3 linker histone, cluster member enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,739,206...23,739,981
Ensembl chr13:23,737,436...23,744,860
JBrowse link
G H1f4 H1.4 linker histone, cluster member enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,805,760...23,806,541
Ensembl chr13:23,804,612...23,806,541
JBrowse link
G H1f5 H1.5 linker histone, cluster member enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:21,964,002...21,964,795
Ensembl chr13:21,964,053...21,964,795
JBrowse link
G H1f6 H1.6 linker histone, cluster member enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,879,794...23,880,528
Ensembl chr13:23,879,797...23,880,708
JBrowse link
G H1f8 H1.8 linker histone enables IDA
IBA
(MGI:5559660|PMID:22868987)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:22868987 MGI:5559660 MGI:6201960 NCBI chr 6:115,921,892...115,927,203
Ensembl chr 6:115,921,899...115,927,197
JBrowse link
G H1f9 H1.9 linker histone enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:94,858,419...94,859,282
Ensembl chr11:94,858,419...94,859,282
JBrowse link
G H2ab1 H2A.B variant histone 1 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:115,924,454...115,924,801
Ensembl chr  X:115,924,454...115,924,801
JBrowse link
G H2ab2 H2A.B variant histone 2 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:115,590,875...115,591,222
Ensembl chr  X:115,590,875...115,591,222
JBrowse link
G H2ab3 H2A.B variant histone 3 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:119,222,279...119,222,923
Ensembl chr  X:119,222,445...119,222,792
JBrowse link
G H2ac1 H2A clustered histone 1 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:24,118,420...24,118,896
Ensembl chr13:24,118,445...24,118,834
JBrowse link
G H2ac10 H2A clustered histone 10 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,718,045...23,718,548
Ensembl chr13:23,718,076...23,718,474
JBrowse link
G H2ac11 H2A clustered histone 11 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:22,226,648...22,227,119
Ensembl chr13:22,226,630...22,227,114
JBrowse link
G H2ac12 H2A clustered histone 12 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:22,219,292...22,219,813
Ensembl chr13:22,219,334...22,219,738
JBrowse link
G H2ac13 H2A clustered histone 13 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:21,900,582...21,901,029
Ensembl chr13:21,900,592...21,900,984
JBrowse link
G H2ac15 H2A clustered histone 15 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:21,937,547...21,938,082
Ensembl chr13:21,937,605...21,937,997
JBrowse link
G H2ac19 H2A clustered histone 19 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:96,147,065...96,147,638
Ensembl chr 3:96,147,065...96,147,592
JBrowse link
G H2ac20 H2A clustered histone 20 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:96,127,728...96,128,209
Ensembl chr 3:96,127,677...96,128,196
JBrowse link
G H2ac21 H2A clustered histone 21 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:96,127,201...96,127,634
Ensembl chr 3:96,127,181...96,127,624
JBrowse link
G H2ac22 H2A clustered histone 22 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:21,970,944...21,971,418
Ensembl chr13:21,970,996...21,971,388
JBrowse link
G H2ac23 H2A clustered histone 23 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:21,994,537...21,995,088
Ensembl chr13:21,994,635...21,995,114
JBrowse link
G H2ac24 H2A clustered histone 24 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:22,017,194...22,017,645
Ensembl chr13:22,017,196...22,017,677
JBrowse link
G H2ac25 H2A clustered histone 25 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:58,845,511...58,846,018
Ensembl chr11:58,845,511...58,847,656
JBrowse link
G H2ac4 H2A clustered histone 4 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,935,061...23,935,577
Ensembl chr13:23,935,109...23,935,581
JBrowse link
G H2ac6 H2A clustered histone 6 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,867,456...23,867,942
Ensembl chr13:23,865,450...23,867,931
JBrowse link
G H2ac7 H2A clustered histone 7 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,758,555...23,759,089
Ensembl chr13:23,758,555...23,759,126
JBrowse link
G H2ac8 H2A clustered histone 8 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:23,754,837...23,755,394
Ensembl chr13:23,754,691...23,755,394
JBrowse link
G H2aj H2J.A histone enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:136,785,246...136,787,072
Ensembl chr 6:136,785,242...136,787,072
JBrowse link
G H2al1b H2A histone family member L1B enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:11,168,671...11,169,160
Ensembl chr  X:11,168,671...11,169,165
JBrowse link
G H2al1e H2A histone family member L1E enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:11,178,173...11,178,666
Ensembl chr  X:11,178,173...11,178,666
JBrowse link
G H2al1f H2A histone family member L1F enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:11,181,397...11,181,714
Ensembl chr  X:11,181,397...11,181,714
JBrowse link
G H2al1j H2A histone family member L1J enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:11,194,061...11,194,390
Ensembl chr  X:11,194,061...11,194,390
JBrowse link
G H2al1k H2A histone family member L1K enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:9,216,838...9,217,376
Ensembl chr  X:9,216,866...9,217,375
JBrowse link
G H2al1m H2A histone family member L1M enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:9,150,003...9,150,527
Ensembl chr  X:9,150,003...9,150,537
JBrowse link
G H2al1n H2A histone family member L1N enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:14,077,387...14,077,896
Ensembl chr  X:14,077,387...14,077,900
JBrowse link
G H2al1o H2A histone family member L1O enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:9,438,199...9,438,630
Ensembl chr  X:9,438,140...9,438,648
JBrowse link
G H2al2a H2A histone family member L2A enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:18,001,228...18,001,769
Ensembl chr 2:18,001,228...18,001,769
JBrowse link
G H2al2b H2A histone family member L2B enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  Y:2,720,339...2,720,674
Ensembl chr  Y:2,720,339...2,720,674
JBrowse link
G H2al3 H2A histone family member L3 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:9,715,942...9,716,491
Ensembl chr  X:9,715,942...9,716,494
JBrowse link
G H2ap H2A.P histone enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:9,713,186...9,713,739
Ensembl chr  X:9,713,167...9,713,747
JBrowse link
G H2ax H2A.X variant histone enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:44,246,012...44,247,374
Ensembl chr 9:44,245,991...44,247,374
JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000119 MGI:4834177 MGI:6201960 NCBI chr 3:137,570,248...137,572,683
Ensembl chr 3:137,570,248...137,572,683
JBrowse link
G H2az2 H2A.Z histone variant 2 enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G H3f3a H3.3 histone A enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:180,630,125...180,641,127
Ensembl chr 1:180,628,397...180,641,508
JBrowse link
G H3f3b H3.3 histone B enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:115,912,787...115,921,313
Ensembl chr11:115,912,738...115,918,788
JBrowse link
G H3f5 H3.5 histone enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:94,481,887...94,488,556
Ensembl chr 4:94,487,622...94,488,032
JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:120,197,173...120,312,374
Ensembl chr10:120,197,180...120,312,374
JBrowse link
G Hmgn1 high mobility group nucleosomal binding domain 1 enables IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr16:95,922,788...95,928,925
Ensembl chr16:95,921,818...95,928,929
JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 9:82,991,995...83,029,411
Ensembl chr 9:82,992,001...83,028,738
JBrowse link
G Hmgn5 high-mobility group nucleosome binding domain 5 enables IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr  X:108,048,143...108,056,986
Ensembl chr  X:108,048,140...108,057,010
JBrowse link
G Macroh2a1 macroH2A.1 histone enables IDA
IBA
ISO
(MGI:5619474|PMID:18936163)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
MGI
PMID:18936163 PMID:21873635 GO_REF:0000119 MGI:4834177 MGI:5619474 MGI:6201960 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174
JBrowse link
G Macroh2a2 macroH2A.2 histone enables IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:61,574,419...61,620,383
Ensembl chr10:61,574,444...61,619,926
JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:132,059,230...132,073,061
Ensembl chr 4:132,059,230...132,080,916
JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahdc1 AT hook, DNA binding motif, containing 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:132,738,797...132,805,421
Ensembl chr 4:132,738,571...132,805,421
JBrowse link
G Msl2 MSL complex subunit 2 enables IMP (MGI:7579240|PMID:38030723) UniProt PMID:38030723 MGI:7579240 NCBI chr 9:100,956,107...100,981,999
Ensembl chr 9:100,956,154...100,981,999
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:45,071,320...45,084,817
Ensembl chr 7:45,071,184...45,087,520
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 28816
    binding 17502
      protein-containing complex binding 2205
        chromatin binding 713
          chromatin DNA binding 153
            chromatin insulator sequence binding 6
            chromatin loop anchoring activity + 3
            nucleosomal DNA binding 56
Path 2
Term Annotations click to browse term
  molecular_function 28816
    binding 17502
      organic cyclic compound binding 5851
        nucleic acid binding 3737
          DNA binding 2359
            chromatin DNA binding 153
              chromatin insulator sequence binding 6
              chromatin loop anchoring activity + 3
              nucleosomal DNA binding 56
paths to the root