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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.


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chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN4 actinin alpha 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:114,354,993...114,427,997
Ensembl chr 1:114,309,693...114,427,991 		JBrowse link
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables ISO (PMID:11809897) UniProt PMID:11809897 NCBI chr15:17,786,808...17,789,422
Ensembl chr15:17,786,357...17,789,422 		JBrowse link
G ATOH1 atonal bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406 		JBrowse link
G ATRX ATRX chromatin remodeler enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980 		JBrowse link
G BAP1 BRCA1 associated protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr20:37,355,499...37,364,298
Ensembl chr20:37,355,494...37,511,125 		JBrowse link
G BCL6 BCL6 transcription repressor enables IEA Ensembl GO_REF:0000107 NCBI chr34:20,112,302...20,135,705
Ensembl chr34:20,113,322...20,124,704 		JBrowse link
G CEBPA CCAAT enhancer binding protein alpha enables ISO (PMID:25921091) MGI PMID:25921091 NCBI chr 1:118,846,252...118,851,045 JBrowse link
G CEBPB CCAAT enhancer binding protein beta enables IEA Ensembl GO_REF:0000107 NCBI chr24:36,661,294...36,663,162
Ensembl chr24:36,661,616...36,662,656 		JBrowse link
G CLOCK clock circadian regulator enables IEA Ensembl GO_REF:0000107 NCBI chr13:47,684,409...47,825,733
Ensembl chr13:47,691,709...47,758,784 		JBrowse link
G CREBBP CREB binding protein enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:37,410,201...37,536,688
Ensembl chr 6:37,409,930...37,534,176 		JBrowse link
G DDX17 DEAD-box helicase 17 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chr10:26,282,592...26,303,128
Ensembl chr10:26,282,598...26,301,633 		JBrowse link
G DHX9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618 		JBrowse link
G EOMES eomesodermin enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527 		JBrowse link
G EP300 E1A binding protein p300 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:24,076,538...24,156,708
Ensembl chr10:24,077,971...24,156,396 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chr16:1,926,443...1,991,995
Ensembl chr16:1,925,956...1,991,838 		JBrowse link
G FOXC2 forkhead box C2 enables ISO (PMID:16456100) UniProt PMID:16456100 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693 		JBrowse link
G FOXC2 forkhead box C2 enables IEA Ensembl GO_REF:0000107
G FOXO1 forkhead box O1 enables ISO (PMID:29320745) MGI PMID:29320745 NCBI chr25:603,433...706,961
Ensembl chr25:603,543...702,825 		JBrowse link
G FOXO3 forkhead box O3 enables IEA Ensembl GO_REF:0000107 NCBI chr12:65,552,455...65,673,467
Ensembl chr12:65,552,310...65,670,198 		JBrowse link
G GATA1 GATA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:41,991,321...41,998,319
Ensembl chr  X:41,971,582...41,998,303 		JBrowse link
G GLI2 GLI family zinc finger 2 enables IEA Ensembl GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GRHL1 grainyhead like transcription factor 1 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chr17:6,953,945...7,007,175
Ensembl chr17:6,953,836...7,006,134 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:75,290,594...75,324,593
Ensembl chr 2:75,290,596...75,324,496 		JBrowse link
G H1-0 H1.0 linker histone enables IEA Ensembl GO_REF:0000107 NCBI chr10:26,827,748...26,829,909
Ensembl chr10:26,829,089...26,829,673 		JBrowse link
G H1-1 H1.1 linker histone, cluster member enables IEA Ensembl GO_REF:0000107 NCBI chr35:23,973,893...23,974,739 JBrowse link
G H1-2 H1.2 linker histone, cluster member enables IEA Ensembl GO_REF:0000107 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-3 H1.3 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chr35:24,155,864...24,156,647 JBrowse link
G H1-4 H1.4 linker histone, cluster member enables IEA Ensembl GO_REF:0000107 NCBI chr35:24,091,950...24,092,694 JBrowse link
G H1-5 H1.5 linker histone, cluster member enables ISO (PMID:15911621), (PMID:22956909) UniProt PMID:15911621 PMID:22956909 NCBI chr35:25,045,883...25,046,775
Ensembl chr35:25,046,023...25,046,703 		JBrowse link
G H2AZ1 H2A.Z variant histone 1 enables ISO (PMID:19834540), (PMID:23637611) UniProt PMID:19834540 PMID:23637611 NCBI chr32:21,889,890...21,892,165
Ensembl chr32:21,889,877...21,892,102 		JBrowse link
G HCFC1 host cell factor C1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chr  X:121,790,585...121,815,395
Ensembl chr  X:121,791,660...121,814,715 		JBrowse link
G HDAC2 histone deacetylase 2 enables ISO (PMID:18458156) MGI PMID:18458156 NCBI chr12:70,053,822...70,083,491
Ensembl chr12:70,053,297...70,103,578 		JBrowse link
G HDAC3 histone deacetylase 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:36,583,283...36,598,121
Ensembl chr 2:36,583,283...36,597,682 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U enables IEA Ensembl GO_REF:0000107 NCBI chr 7:35,832,956...35,842,898
Ensembl chr 7:35,833,988...35,843,754 		JBrowse link
G HR HR lysine demethylase and nuclear receptor corepressor enables IEA TreeGrafter GO_REF:0000118 NCBI chr25:35,120,566...35,136,560
Ensembl chr25:35,119,784...35,135,545 		JBrowse link
G HSF1 heat shock transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252 		JBrowse link
G INSM1 INSM transcriptional repressor 1 enables ISO (PMID:16569215), (PMID:18417529) UniProt PMID:16569215 PMID:18417529 NCBI chr24:3,008,387...3,011,186 JBrowse link
G JMJD1C jumonji domain containing 1C enables IEA TreeGrafter GO_REF:0000118 NCBI chr 4:15,006,670...15,261,139
Ensembl chr 4:15,007,508...15,261,691 		JBrowse link
G KDM3A lysine demethylase 3A enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:38,690,962...38,744,507
Ensembl chr17:38,690,979...38,743,739 		JBrowse link
G KDM3B lysine demethylase 3B enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:25,954,352...26,024,919
Ensembl chr11:25,943,864...26,023,866 		JBrowse link
G KDM5A lysine demethylase 5A enables ISO (PMID:18483221) MGI PMID:18483221 NCBI chr27:42,364,606...42,447,839
Ensembl chr27:42,360,456...42,447,821 		JBrowse link
G KDM6A lysine demethylase 6A enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:38,745,854...38,964,029
Ensembl chr  X:38,745,854...38,959,842 		JBrowse link
G KDM6B lysine demethylase 6B enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:32,689,000...32,711,026
Ensembl chr 5:32,696,211...32,710,666 		JBrowse link
G KLF4 KLF transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr11:62,881,840...62,886,676
Ensembl chr11:62,882,767...62,928,251 		JBrowse link
G LEMD2 LEM domain nuclear envelope protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:3,114,175...3,131,779
Ensembl chr12:3,115,460...3,131,919 		JBrowse link
G LEMD3 LEM domain containing 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:7,775,995...7,833,895
Ensembl chr10:7,777,946...7,834,107 		JBrowse link
G LGALS7B galectin 7B enables IEA Ensembl GO_REF:0000107
G LOC485121 lysine-specific demethylase 4D enables ISO (PMID:6953429) MGI PMID:6953429 NCBI chr21:6,002,292...6,037,344
Ensembl chr21:5,987,723...6,004,783 		JBrowse link
G MACROH2A1 macroH2A.1 histone enables IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219 		JBrowse link
G MACROH2A2 macroH2A.2 histone enables IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr 4:21,057,935...21,087,097
Ensembl chr 4:21,057,947...21,086,730 		JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:9038338 RGD:1601325 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994 		JBrowse link
G MED1 mediator complex subunit 1 ISO RGD PMID:20702579 RGD:5128544 NCBI chr 9:22,989,257...23,019,350
Ensembl chr 9:22,989,301...23,019,349 		JBrowse link
G MYOD1 myogenic differentiation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr21:40,257,792...40,260,461
Ensembl chr21:40,258,027...40,259,712 		JBrowse link
G MYOG myogenin enables IEA Ensembl GO_REF:0000107 NCBI chr 7:112,116...114,604
Ensembl chr 7:112,034...113,892 		JBrowse link
G NEUROG3 neurogenin 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:20,654,824...20,657,816
Ensembl chr 4:20,656,791...20,657,438 		JBrowse link
G NKAP NFKB activating protein enables ISO (PMID:20610818) MGI PMID:20610818 NCBI chr  X:91,922,326...91,956,566
Ensembl chr  X:91,923,550...91,956,414 		JBrowse link
G NOTCH1 notch receptor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277 		JBrowse link
G NR1H2 nuclear receptor subfamily 1 group H member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:106,332,691...106,339,168
Ensembl chr 1:106,332,798...106,339,135 		JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 enables IEA Ensembl GO_REF:0000107 NCBI chr18:42,333,173...42,346,152
Ensembl chr18:42,333,202...42,341,236 		JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase enables IEA Ensembl GO_REF:0000107 NCBI chr  X:55,821,227...55,857,597
Ensembl chr  X:55,821,234...55,855,502 		JBrowse link
G PAX6 paired box 6 enables IEA Ensembl GO_REF:0000107
G PER1 period circadian regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:32,957,517...32,972,368
Ensembl chr 5:32,957,127...32,968,465 		JBrowse link
G PITX2 paired like homeodomain 2 enables ISO (PMID:21035439) MGI PMID:21035439 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:67,757,779...67,760,417
Ensembl chr11:67,758,918...67,760,374 		JBrowse link
G POU5F1 POU class 5 homeobox 1 enables ISO (PMID:24268575) MGI PMID:24268575
G PPARGC1A PPARG coactivator 1 alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 3:85,645,942...86,284,570
Ensembl chr 3:86,016,140...86,281,269 		JBrowse link
G PRDM14 PR/SET domain 14 enables IEA Ensembl GO_REF:0000107 NCBI chr29:19,203,798...19,220,149
Ensembl chr29:19,203,807...19,220,518 		JBrowse link
G RARA retinoic acid receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 9:22,254,803...22,298,614
Ensembl chr 9:22,254,806...22,289,459 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit enables IEA Ensembl GO_REF:0000107 NCBI chr18:51,550,003...51,558,861
Ensembl chr18:51,550,040...51,558,875 		JBrowse link
G RTP2 receptor transporter protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr34:20,087,395...20,091,248
Ensembl chr34:20,087,226...20,115,428 		JBrowse link
G RUNX2 RUNX family transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:107,384,328...107,400,849
Ensembl chr 1:107,384,342...107,400,505 		JBrowse link
G RXRA retinoid X receptor alpha enables ISO (PMID:17952069), (PMID:29431742) MGI PMID:17952069 PMID:29431742 NCBI chr 9:50,525,195...50,575,720
Ensembl chr 9:50,484,567...50,573,119 		JBrowse link
G RXRB retinoid X receptor beta enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chr12:2,657,058...2,663,648
Ensembl chr12:2,657,792...2,663,706 		JBrowse link
G SBNO1 strawberry notch homolog 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr26:6,207,420...6,269,406
Ensembl chr26:6,216,435...6,263,098 		JBrowse link
G SBNO2 strawberry notch homolog 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:57,592,901...57,640,047
Ensembl chr20:57,267,724...57,640,750 		JBrowse link
G SIRT6 sirtuin 6 enables IEA Ensembl GO_REF:0000107 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944 		JBrowse link
G SMAD3 SMAD family member 3 enables IEA Ensembl GO_REF:0000107 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337 		JBrowse link
G SOX2 SRY-box transcription factor 2 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chr34:14,853,000...14,855,153 JBrowse link
G SRF serum response factor enables IEA Ensembl GO_REF:0000107 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672 		JBrowse link
G SUZ12 SUZ12 polycomb repressive complex 2 subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:40,992,797...41,038,729
Ensembl chr 9:40,994,825...41,038,645 		JBrowse link
G TBR1 T-box brain transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr36:6,989,644...6,997,916
Ensembl chr36:6,989,488...6,997,900 		JBrowse link
G THRA thyroid hormone receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 9:22,469,466...22,493,445
Ensembl chr 9:22,468,594...22,493,445 		JBrowse link
G THRB thyroid hormone receptor beta enables IEA Ensembl GO_REF:0000107 NCBI chr23:19,278,650...19,648,547
Ensembl chr23:19,277,493...19,660,283 		JBrowse link
G TOP1 DNA topoisomerase I ISO RGD PMID:1332866 RGD:1580856 NCBI chr24:29,075,267...29,166,733
Ensembl chr24:29,075,492...29,165,864 		JBrowse link
G TOX thymocyte selection associated high mobility group box enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034 		JBrowse link
G TOX2 TOX high mobility group box family member 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr24:31,523,323...31,656,361
Ensembl chr24:31,522,798...31,656,373 		JBrowse link
G TOX3 TOX high mobility group box family member 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:62,981,706...63,087,519
Ensembl chr 2:62,981,611...63,086,684 		JBrowse link
G TOX4 TOX high mobility group box family member 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr15:18,512,270...18,528,293
Ensembl chr15:18,512,327...18,528,516 		JBrowse link
G UTY tetratricopeptide repeat protein enables IEA TreeGrafter GO_REF:0000118
G VAX1 ventral anterior homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr28:27,624,699...27,628,736
Ensembl chr28:27,623,971...27,628,717 		JBrowse link
G VAX2 ventral anterior homeobox 2 enables ISO (PMID:15905411) MGI PMID:15905411 NCBI chr10:69,252,926...69,262,225 JBrowse link
G WBP2 WW domain binding protein 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:4,743,476...4,752,301
Ensembl chr 9:4,743,539...4,752,270 		JBrowse link
G WBP2NL WBP2 N-terminal like enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:23,333,420...23,368,234
Ensembl chr10:23,344,094...23,368,153 		JBrowse link
G XBP1 X-box binding protein 1 enables ISO (PMID:25280941) UniProt PMID:25280941 NCBI chr26:22,162,675...22,168,149
Ensembl chr26:22,163,222...22,168,105 		JBrowse link
G ZC3H7B zinc finger CCCH-type containing 7B enables ISO (PMID:18458156) RGD
MGI		 PMID:18458156 PMID:20702579 RGD:5128544 NCBI chr10:23,882,379...23,944,850
Ensembl chr10:23,884,981...23,920,131 		JBrowse link
G ZIC2 Zic family member 2 enables ISO (MGI:4833763|PMID:20676059) UniProt PMID:20676059 MGI:4833763 NCBI chr22:49,948,743...49,952,007
Ensembl chr22:49,948,778...49,950,055 		JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor enables IEA Ensembl GO_REF:0000107 NCBI chr 5:81,808,512...81,863,811
Ensembl chr 5:81,809,393...81,858,655 		JBrowse link
G MZF1 myeloid zinc finger 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:99,387,780...99,398,806
Ensembl chr 1:99,383,711...99,397,388 		JBrowse link
G ZBTB11 zinc finger and BTB domain containing 11 enables IEA TreeGrafter GO_REF:0000118 NCBI chr33:7,983,192...8,015,590
Ensembl chr33:7,984,851...8,015,391 		JBrowse link
G ZFX zinc finger protein X-linked enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:19,722,172...19,793,059
Ensembl chr  X:19,760,045...19,790,196 		JBrowse link
G ZKSCAN4 zinc finger with KRAB and SCAN domains 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr35:25,381,935...25,389,116 JBrowse link
G ZNF276 zinc finger protein 276 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:63,838,818...63,857,742
Ensembl chr 5:63,838,987...63,857,924 		JBrowse link
G ZNF32 zinc finger protein 32 enables IEA TreeGrafter GO_REF:0000118 NCBI chr28:3,484,504...3,489,768
Ensembl chr28:3,484,551...3,489,577 		JBrowse link
G ZNF423 zinc finger protein 423 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:65,512,342...65,778,410
Ensembl chr 2:65,438,842...65,778,407 		JBrowse link
G ZNF521 zinc finger protein 521 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 7:63,146,696...63,421,790
Ensembl chr 7:63,146,690...63,421,792 		JBrowse link
G ZNF692 zinc finger protein 692 enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:13,746,183...13,754,549
Ensembl chr16:13,746,201...13,776,042 		JBrowse link
chromatin loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor enables ISO (PMID:34856126) FlyBase PMID:34856126 NCBI chr 5:81,808,512...81,863,811
Ensembl chr 5:81,809,393...81,858,655 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHDDS dehydrodolichyl diphosphate synthase subunit enables IEA InterPro GO_REF:0000002 NCBI chr 2:73,583,927...73,611,321
Ensembl chr 2:73,579,042...73,610,696 		JBrowse link
G H1-0 H1.0 linker histone enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:26,827,748...26,829,909
Ensembl chr10:26,829,089...26,829,673 		JBrowse link
G H1-1 H1.1 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chr35:23,973,893...23,974,739 JBrowse link
G H1-10 H1.10 linker histone enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:2,799,360...2,800,524 JBrowse link
G H1-2 H1.2 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-3 H1.3 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chr35:24,155,864...24,156,647 JBrowse link
G H1-4 H1.4 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chr35:24,091,950...24,092,694 JBrowse link
G H1-6 H1.6 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810 		JBrowse link
G H1-8 H1.8 linker histone enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:5,614,822...5,619,136
Ensembl chr20:5,617,001...5,624,352 		JBrowse link
G H2AC15 H2A clustered histone 15 enables IBA GO_Central GO_REF:0000033 NCBI chr35:25,030,215...25,031,023
Ensembl chr35:25,030,551...25,030,940 		JBrowse link
G H2AC17 H2A clustered histone 17 enables IBA GO_Central GO_REF:0000033 NCBI chr35:25,060,505...25,061,332
Ensembl chr35:25,060,862...25,061,254 		JBrowse link
G H2AC5 H2A clustered histone 5 enables IBA GO_Central GO_REF:0000033 NCBI chr35:24,001,879...24,003,169
Ensembl chr35:24,001,900...24,002,292 		JBrowse link
G H2AC8 H2A clustered histone 8 enables IBA GO_Central GO_REF:0000033 NCBI chr35:24,131,647...24,132,475 JBrowse link
G H2AZ1 H2A.Z variant histone 1 enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr32:21,889,890...21,892,165
Ensembl chr32:21,889,877...21,892,102 		JBrowse link
G H2BC25 H2B clustered histone 25 enables IEA TreeGrafter GO_REF:0000118 NCBI chr35:24,144,778...24,155,922 JBrowse link
G H3-3A H3.3 histone A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables IEA Ensembl GO_REF:0000107 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr31:34,275,400...34,283,373
Ensembl chr31:34,275,839...34,282,340 		JBrowse link
G HMGN2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chr 2:73,579,042...73,582,786
Ensembl chr 2:73,579,042...73,610,696 		JBrowse link
G HMGN3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chr12:40,135,984...40,168,281
Ensembl chr12:40,135,988...40,168,266 		JBrowse link
G HMGN4 high mobility group nucleosomal binding domain 4 enables IEA InterPro GO_REF:0000002 NCBI chr35:24,302,520...24,310,674
Ensembl chr35:24,304,716...24,309,841 		JBrowse link
G LOC100685245 non-histone chromosomal protein HMG-14-like enables IEA InterPro GO_REF:0000002 NCBI chr11:1,364,693...1,366,497 JBrowse link
G LOC100688605 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr 7:9,991,689...9,992,445 JBrowse link
G LOC100688901 high mobility group nucleosomal binding domain 2 pseudogene enables IEA InterPro GO_REF:0000002 NCBI chr36:3,185,192...3,185,482 JBrowse link
G LOC100856135 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr37:10,830,795...10,831,276 JBrowse link
G LOC100856313 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr 6:14,963,265...14,963,732 JBrowse link
G LOC119867686 histone H1.4-like enables IEA TreeGrafter GO_REF:0000118
G LOC119867706 histone H2A type 1-E enables IBA GO_Central GO_REF:0000033
G LOC119867744 histone H1.2-like enables IEA TreeGrafter GO_REF:0000118
G LOC119870795 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002
G LOC119871538 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002
G LOC119871774 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 enables IEA TreeGrafter GO_REF:0000118
G LOC119876617 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002
G LOC610839 high mobility group nucleosomal binding domain 2 pseudogene enables IEA InterPro GO_REF:0000002 NCBI chr12:30,973,316...30,973,712 JBrowse link
G LOC612779 histone H3.3A-like enables ISO (PMID:21274551) UniProt PMID:21274551 NCBI chr 1:19,127,678...19,128,230 JBrowse link
G MACROH2A1 macroH2A.1 histone enables IEA Ensembl GO_REF:0000107 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219 		JBrowse link
G RCC1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:71,948,159...71,972,902
Ensembl chr 2:71,948,165...71,964,353 		JBrowse link
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:41,165,593...41,337,237
Ensembl chr20:41,165,522...41,335,917 		JBrowse link
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:481,504...502,914
Ensembl chr10:481,817...501,551 		JBrowse link
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:22,015,402...22,036,424
Ensembl chr 9:22,015,600...22,035,442 		JBrowse link
G VRK1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) UniProt PMID:35390161 NCBI chr 8:65,444,404...65,551,348
Ensembl chr 8:65,443,949...65,551,151 		JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHDC1 AT-hook DNA binding motif containing 1 enables ISO (PMID:35585237) UniProt PMID:35585237 NCBI chr 2:72,711,626...72,762,802
Ensembl chr 2:72,747,701...72,752,605 		JBrowse link
G MSL2 MSL complex subunit 2 enables ISO (MGI:7579240|PMID:38030723) UniProt PMID:38030723 MGI:7579240 NCBI chr23:32,629,120...32,663,885
Ensembl chr23:32,631,804...32,664,277 		JBrowse link
G PCBP2 poly(rC) binding protein 2 enables ISO (PMID:31361039) FlyBase PMID:31361039 NCBI chr27:1,736,264...1,759,416 JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:107,384,328...107,400,849
Ensembl chr 1:107,384,342...107,400,505 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18797
    binding 16661
      protein-containing complex binding 2135
        chromatin binding 703
          chromatin DNA binding 146
            chromatin insulator sequence binding 10
            chromatin loop anchoring activity + 5
            nucleosomal DNA binding 41
Path 2
Term Annotations click to browse term
  molecular_function 18797
    binding 16661
      organic cyclic compound binding 5908
        nucleic acid binding 3777
          DNA binding 2291
            chromatin DNA binding 146
              chromatin insulator sequence binding 10
              chromatin loop anchoring activity + 5
              nucleosomal DNA binding 41
paths to the root