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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Interacting selectively and non-covalently with DNA that is assembled into chromatin.


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chromatin DNA binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN4 actinin alpha 4 JBrowse link 1 114,354,993 114,427,997 RGD:13508589
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link 15 17,786,808 17,789,422 RGD:13508589
G ATOH1 atonal bHLH transcription factor 1 JBrowse link 32 16,807,217 16,809,294 RGD:13508589
G BCL6 BCL6 transcription repressor JBrowse link 34 20,112,302 20,135,705 RGD:13508589
G DHX9 DExH-box helicase 9 JBrowse link 7 16,233,763 16,292,576 RGD:13508589
G EP300 E1A binding protein p300 JBrowse link 10 24,076,538 24,156,708 RGD:13508589
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit JBrowse link 16 1,926,443 1,991,995 RGD:13508589
G FOXC2 forkhead box C2 JBrowse link 5 66,234,336 66,296,007 RGD:13508589
G FOXO3 forkhead box O3 JBrowse link 12 65,552,455 65,673,467 RGD:13508589
G GATA1 GATA binding protein 1 JBrowse link X 41,991,321 41,998,319 RGD:13508589
G GRHL1 grainyhead like transcription factor 1 JBrowse link 17 6,953,945 7,007,175 RGD:13508589
G GRHL2 grainyhead like transcription factor 2 JBrowse link 13 3,204,898 3,362,533 RGD:13508589
G GRHL3 grainyhead like transcription factor 3 JBrowse link 2 75,290,594 75,324,593 RGD:13508589
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 7 35,832,956 35,842,898 RGD:13508589
G HR HR lysine demethylase and nuclear receptor corepressor JBrowse link 25 35,120,566 35,136,560 RGD:13508589
G HSF1 heat shock transcription factor 1 JBrowse link 13 37,724,741 37,745,259 RGD:13508589
G JMJD1C jumonji domain containing 1C JBrowse link 4 15,006,670 15,261,139 RGD:13508589
G KDM3A lysine demethylase 3A JBrowse link 17 38,690,962 38,744,507 RGD:13508589
G KDM3B lysine demethylase 3B JBrowse link 11 25,954,352 26,024,919 RGD:13508589
G KDM5A lysine demethylase 5A JBrowse link 27 42,364,606 42,447,839 RGD:13508589
G KDM6A lysine demethylase 6A JBrowse link X 38,745,854 38,964,029 RGD:13508589
G KDM6B lysine demethylase 6B JBrowse link 5 32,689,000 32,711,026 RGD:13508589
G LGALS7B galectin 7B JBrowse link 1 114,309,641 114,311,861 RGD:13508589
G MACROH2A1 macroH2A.1 histone JBrowse link 11 23,369,957 23,448,235 RGD:13508589
G MACROH2A2 macroH2A.2 histone JBrowse link 4 21,057,935 21,087,097 RGD:13508589
G MYOD1 myogenic differentiation 1 JBrowse link 21 40,257,792 40,260,461 RGD:13508589
G MYOG myogenin JBrowse link 7 112,116 114,604 RGD:13508589
G NEUROG3 neurogenin 3 JBrowse link 4 20,654,824 20,657,816 RGD:13508589
G NKAP NFKB activating protein JBrowse link X 91,922,326 91,956,566 RGD:13508589
G NOTCH1 notch receptor 1 JBrowse link 9 48,975,972 49,018,985 RGD:13508589
G PER1 period circadian regulator 1 JBrowse link 5 32,957,517 32,972,368 RGD:13508589
G POLE3 DNA polymerase epsilon 3, accessory subunit JBrowse link 11 67,757,779 67,760,417 RGD:13508589
G POU5F1 POU class 5 homeobox 1 JBrowse link 12 860,702 866,099 RGD:13508589
G PPARGC1A PPARG coactivator 1 alpha JBrowse link 3 85,645,942 86,284,570 RGD:13508589
G PRDM1 PR/SET domain 1 JBrowse link 12 63,454,242 63,495,278 RGD:13508589
G PRDM12 PR/SET domain 12 JBrowse link 9 53,284,455 53,300,951 RGD:13508589
G PRDM14 PR/SET domain 14 JBrowse link 29 19,203,798 19,220,149 RGD:13508589
G PRDM2 PR/SET domain 2 JBrowse link 2 83,381,021 83,429,640 RGD:13508589
G PRDM4 PR/SET domain 4 JBrowse link 10 31,071,998 31,100,008 RGD:13508589
G PRDM6 PR/SET domain 6 JBrowse link 11 12,942,789 13,046,278 RGD:13508589
G RARA retinoic acid receptor alpha JBrowse link 9 22,254,803 22,298,614 RGD:13508589
G RELA RELA proto-oncogene, NF-kB subunit JBrowse link 18 51,550,003 51,558,861 RGD:13508589
G RUVBL2 RuvB like AAA ATPase 2 JBrowse link 1 107,384,328 107,400,849 RGD:13508589
G SBNO1 strawberry notch homolog 1 JBrowse link 26 6,207,420 6,269,406 RGD:13508589
G SBNO2 strawberry notch homolog 2 JBrowse link 20 57,592,901 57,640,047 RGD:13508589
G SMAD3 SMAD family member 3 JBrowse link 30 31,246,313 31,360,098 RGD:13508589
G SRF serum response factor JBrowse link 12 11,664,441 11,673,846 RGD:13508589
G STAT3 signal transducer and activator of transcription 3 JBrowse link 9 20,539,660 20,614,631 RGD:13508589
G SUZ12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 9 40,992,797 41,038,729 RGD:13508589
G THRA thyroid hormone receptor alpha JBrowse link 9 22,469,466 22,493,445 RGD:13508589
G TOX thymocyte selection associated high mobility group box JBrowse link 29 9,542,471 9,841,759 RGD:13508589
G VAX1 ventral anterior homeobox 1 JBrowse link 28 27,624,699 27,628,736 RGD:13508589
G WBP2 WW domain binding protein 2 JBrowse link 9 4,743,476 4,752,301 RGD:13508589
G WBP2NL WBP2 N-terminal like JBrowse link 10 23,333,420 23,368,234 RGD:13508589
chromatin insulator sequence binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTCF CCCTC-binding factor JBrowse link 5 81,808,512 81,863,811 RGD:13508589
nucleosomal DNA binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DHDDS dehydrodolichyl diphosphate synthase subunit JBrowse link 2 73,583,927 73,611,321 RGD:13508589
G H1-2 H1.2 linker histone, cluster member JBrowse link 35 24,009,304 24,011,602 RGD:13508589
G H1-6 H1.6 linker histone, cluster member JBrowse link 35 24,046,374 24,065,892 RGD:13508589
G H1-7 H1.7 linker histone JBrowse link 27 6,389,797 6,396,021 RGD:13508589
G H1-8 H1.8 linker histone JBrowse link 20 5,614,822 5,619,136 RGD:13508589
G HMGN1 high mobility group nucleosome binding domain 1 JBrowse link 31 34,275,400 34,283,373 RGD:13508589
G HMGN2 high mobility group nucleosomal binding domain 2 JBrowse link 2 73,579,042 73,582,786 RGD:13508589
G HMGN3 high mobility group nucleosomal binding domain 3 JBrowse link 12 40,135,984 40,168,281 RGD:13508589
G HMGN4 high mobility group nucleosomal binding domain 4 JBrowse link 35 24,302,520 24,310,674 RGD:13508589
G LOC100856135 non-histone chromosomal protein HMG-17 pseudogene JBrowse link 37 10,830,795 10,831,276 RGD:13508589
G LOC106559156 non-histone chromosomal protein HMG-14 pseudogene JBrowse link 8 22,947,029 22,947,470 RGD:13508589
G LOC111097623 non-histone chromosomal protein HMG-14 pseudogene JBrowse link 10 64,658,545 64,672,663 RGD:13508589
G LOC488269 histone H1.4 RGD:13508589
G MACROH2A1 macroH2A.1 histone JBrowse link 11 23,369,957 23,448,235 RGD:13508589
G RCC1 regulator of chromosome condensation 1 JBrowse link 2 71,948,159 71,972,902 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 13387
    binding 9757
      chromatin binding 401
        chromatin DNA binding 69
          chromatin insulator sequence binding 1
          nucleosomal DNA binding 15
Path 2
Term Annotations click to browse term
  molecular_function 13387
    binding 9757
      organic cyclic compound binding 4677
        nucleic acid binding 2887
          DNA binding 1573
            chromatin DNA binding 69
              chromatin insulator sequence binding 1
              nucleosomal DNA binding 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.