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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of heterochromatin assembly
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Accession:GO:0031445 term browser browse the term
Definition:Any process that modulates the frequency, rate, extent or location of heterochromatin formation.
Synonyms:exact_synonym: regulation of heterochromatin formation



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negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in ISS UniProt GO_REF:0000024 NCBI chr27:37,064,107...37,073,791
Ensembl chr27:37,064,080...37,073,789
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISO (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chr27:37,102,728...37,114,084
Ensembl chr27:37,103,016...37,114,556
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 involved_in ISO (PMID:21496894) UniProt PMID:21496894 NCBI chr 4:19,759,661...19,898,345
Ensembl chr 4:19,768,137...19,889,907
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in ISO (PMID:20129925) UniProt PMID:20129925 NCBI chr 1:98,188,014...98,253,930
Ensembl chr 1:98,188,826...98,254,411
JBrowse link
G PHF8 PHD finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:45,635,204...45,741,850
Ensembl chr  X:45,571,840...46,081,994
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein involved_in ISO (PMID:27732843) UniProt PMID:27732843 NCBI chr27:32,082,615...32,194,954
Ensembl chr27:32,086,675...32,177,364
JBrowse link
G DNMT1 DNA methyltransferase 1 involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:28581500), (PMID:29211708)
(MGI:6271895|PMID:29728365)
UniProt PMID:28581500 PMID:29211708 PMID:29728365 MGI:6271895 NCBI chr26:23,951,704...23,993,620
Ensembl chr26:23,953,130...23,992,431
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:18,392,706...18,443,241
Ensembl chr25:18,392,409...18,443,241
JBrowse link
G PPHLN1 periphilin 1 involved_in ISO (PMID:28581500) UniProt PMID:28581500 NCBI chr27:11,445,893...11,590,168
Ensembl chr27:11,443,394...11,590,107
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chr27:16,829,611...16,856,960
Ensembl chr27:16,829,968...16,839,166
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (PMID:24623306), (PMID:27732843)
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
UniProt PMID:20164836 PMID:24623306 PMID:27732843 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chr17:60,035,819...60,069,721
Ensembl chr17:60,037,379...60,069,551
JBrowse link
G TASOR transcription activation suppressor involved_in ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500 PMID:29211708 NCBI chr20:33,665,231...33,713,264
Ensembl chr20:33,646,000...33,712,936
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in ISO (PMID:24623306)
(MGI:5440670|PMID:20164836)
UniProt PMID:20164836 PMID:24623306 MGI:5440670 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G ZNF304 zinc finger protein 304 involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chr 1:100,739,792...100,748,656
Ensembl chr 1:100,740,374...100,768,032
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in ISO (PMID:20935635) UniProt PMID:20935635 NCBI chr10:300,863...306,546
Ensembl chr10:300,903...305,438
JBrowse link
G SIN3A SIN3 transcription regulator family member A involved_in ISO (PMID:22783022) BHF-UCL PMID:22783022 NCBI chr30:38,231,844...38,306,665
Ensembl chr30:38,232,680...38,382,635
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in ISO (PMID:20407419) UniProt PMID:20407419 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM1A lysine demethylase 1A involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr 2:76,313,742...76,375,716
Ensembl chr 2:76,156,434...76,375,632
JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr 1:68,538,014...68,655,173
Ensembl chr 1:68,540,051...68,654,414
JBrowse link
G SAMD1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr20:48,427,935...48,430,703 JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 13969
    cellular process 13228
      regulation of cellular process 9100
        regulation of cellular component biogenesis 980
          regulation of chromatin assembly 23
            regulation of heterochromatin assembly 22
              negative regulation of heterochromatin assembly + 5
              positive regulation of heterochromatin assembly + 13
              regulation of DNA methylation-dependent heterochromatin assembly + 16
              regulation of heterochromatin assembly by small RNA + 0
              regulation of pericentric heterochromatin assembly + 0
              regulation of ribosomal DNA heterochromatin assembly + 3
              regulation of siRNA-independent facultative heterochromatin assembly 0
              regulation of silent mating-type cassette heterochromatin assembly + 0
Path 2
Term Annotations click to browse term
  biological_process 13969
    cellular process 13228
      cellular component organization or biogenesis 5515
        cellular component organization 5380
          organelle organization 3264
            chromosome organization 780
              chromatin organization 392
                regulation of gene expression, epigenetic 156
                  negative regulation of gene expression, epigenetic 84
                    heterochromatin assembly 77
                      regulation of heterochromatin assembly 22
                        negative regulation of heterochromatin assembly + 5
                        positive regulation of heterochromatin assembly + 13
                        regulation of DNA methylation-dependent heterochromatin assembly + 16
                        regulation of heterochromatin assembly by small RNA + 0
                        regulation of pericentric heterochromatin assembly + 0
                        regulation of ribosomal DNA heterochromatin assembly + 3
                        regulation of siRNA-independent facultative heterochromatin assembly 0
                        regulation of silent mating-type cassette heterochromatin assembly + 0
paths to the root