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ONTOLOGY REPORT - ANNOTATIONS


Term:replication fork processing
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Accession:GO:0031297 term browser browse the term
Definition:The process in which a DNA replication fork that has stalled is restored to a functional state and replication is restarted. The stalling may be due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes.
Synonyms:exact_synonym: collapsed replication fork processing;   recovery from replication fork arrest;   recovery from replication fork stalling
 narrow_synonym: recovery from replication fork arrest at rDNA locus;   recovery from replication fork stalling at rDNA locus;   replication fork processing at rDNA locus;   replication fork processing at ribosomal DNA locus
 related_synonym: replication fork restart;   replication restart
 alt_id: GO:0034065


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replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor involved_in ISO (PMID:22144908) UniProt PMID:22144908 NCBI chr17:76,293,410...76,297,171 JBrowse link
G ATR ATR serine/threonine kinase involved_in ISO (MGI:6467697|PMID:29125140) UniProt PMID:29125140 MGI:6467697 NCBI chr 3:139,482,606...139,612,274
Ensembl chr 3:147,075,185...147,196,261
JBrowse link
G ATRX ATRX chromatin remodeler involved_in ISO (MGI:5568153|PMID:24651726) UniProt PMID:24651726 MGI:5568153 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G BLM BLM RecQ like helicase involved_in ISO (PMID:17115688)
(MGI:6467697|PMID:29125140)
UniProt PMID:17115688 PMID:29125140 MGI:6467697 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864
JBrowse link
G BOD1L1 biorientation of chromosomes in cell division 1 like 1 involved_in ISO (PMID:26166705) UniProt PMID:26166705 NCBI chr 4:7,986,005...8,045,002
Ensembl chr 4:13,294,884...13,345,519
JBrowse link
G CDK9 cyclin dependent kinase 9 involved_in ISO (PMID:20930849) UniProt PMID:20930849 NCBI chr 9:98,905,468...98,909,923
Ensembl chr 9:127,580,862...127,584,935
JBrowse link
G CENPS centromere protein S involved_in ISO (PMID:20347428) UniProt PMID:20347428 NCBI chr 1:9,190,303...9,211,812 JBrowse link
G CENPX centromere protein X involved_in ISO (PMID:20347428) UniProt PMID:20347428 NCBI chr17:76,423,317...76,427,577
Ensembl chr17:82,128,636...82,132,831
JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:26503245) UniProt PMID:26503245 NCBI chr12:55,176,165...55,207,123 JBrowse link
G ETAA1 ETAA1 activator of ATR kinase involved_in ISO (PMID:27723717), (PMID:27723720) UniProt PMID:27723717 PMID:27723720 NCBI chr2A:67,455,668...67,470,509
Ensembl chr2A:68,578,554...68,591,534
JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 involved_in ISO (PMID:31255466) UniProt PMID:31255466 NCBI chr14:49,783,072...49,835,645
Ensembl chr14:68,656,669...68,707,834
JBrowse link
G FAM111A FAM111 trypsin like peptidase A involved_in ISO (PMID:32165630) UniProt PMID:32165630 NCBI chr11:54,359,711...54,372,132
Ensembl chr11:57,818,413...57,823,046
JBrowse link
G FANCM FA complementation group M involved_in ISO (PMID:20347428) UniProt PMID:20347428 NCBI chr14:25,752,295...25,817,001
Ensembl chr14:44,080,146...44,143,958
JBrowse link
G FBH1 F-box DNA helicase 1 involved_in ISO (PMID:25585578)
(MGI:5566975|PMID:24108124)
UniProt PMID:24108124 PMID:25585578 MGI:5566975 NCBI chr10:5,931,389...5,978,844
Ensembl chr10:5,915,713...5,962,778
JBrowse link
G GEN1 GEN1 Holliday junction 5' flap endonuclease involved_in ISO (PMID:26578604) UniProt PMID:26578604 NCBI chr2A:17,735,953...17,766,018
Ensembl chr2A:17,862,070...17,892,048
JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in ISO (MGI:6467697|PMID:29125140) UniProt PMID:29125140 MGI:6467697 NCBI chr 6:71,089,817...71,190,700
Ensembl chr 6:74,478,303...74,479,826
JBrowse link
G LOC100986203 histone-lysine N-methyltransferase SETMAR involved_in ISO (PMID:20457750), (PMID:22231448), (PMID:24573677) UniProt PMID:20457750 PMID:22231448 PMID:24573677 NCBI chr 3:4,256,539...4,271,593
Ensembl chr 3:4,357,890...4,371,791
JBrowse link
G MMS22L MMS22 like, DNA repair protein involved_in ISO (PMID:21055983), (PMID:21055984), (PMID:21055985) UniProt PMID:21055983 PMID:21055984 PMID:21055985 NCBI chr 6:94,989,906...95,127,260
Ensembl chr 6:98,861,299...99,011,773
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 involved_in ISO (PMID:26323318) ParkinsonsUK-UCL PMID:26323318 NCBI chr 1:181,322,760...181,359,321
Ensembl chr 1:185,606,796...185,642,984
JBrowse link
G OOEP oocyte expressed protein involved_in ISO (MGI:6467697|PMID:29125140) UniProt PMID:29125140 MGI:6467697 NCBI chr 6:71,195,619...71,197,040
Ensembl chr 6:74,484,764...74,511,331
JBrowse link
G PCNA proliferating cell nuclear antigen involved_in ISO (MGI:5522574|PMID:24115439) BHF-UCL PMID:24115439 MGI:5522574 NCBI chr20:5,134,930...5,146,603
Ensembl chr20:4,927,731...4,939,440
JBrowse link
G PRIMPOL primase and DNA directed polymerase involved_in ISO (PMID:28534480)
(PMID:24240614), (PMID:24267451)
UniProt PMID:24240614 PMID:24267451 PMID:28534480 NCBI chr 4:176,815,122...176,860,682 JBrowse link
G RAD51 RAD51 recombinase involved_in
acts_upstream_of_or_within
ISO (PMID:25585578)
(MGI:5442243|PMID:22778135)
(PMID:22778135)
UniProt
MGI
BHF-UCL
PMID:22778135 PMID:25585578 MGI:5442243 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207
JBrowse link
G RFWD3 ring finger and WD repeat domain 3 involved_in ISO (PMID:26474068) UniProt PMID:26474068 NCBI chr16:55,187,178...55,233,265
Ensembl chr16:74,541,450...74,586,951
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5522574|PMID:24115439) BHF-UCL PMID:24115439 MGI:5522574
G SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 involved_in ISO (PMID:19793862) UniProt PMID:19793862 NCBI chr2B:103,672,934...103,743,802
Ensembl chr2B:222,276,353...222,347,258
JBrowse link
G THOC1 THO complex 1 involved_in ISO (PMID:22144908) UniProt PMID:22144908 NCBI chr18:14,052,858...14,102,559
Ensembl chr18:17,692,797...17,742,570
JBrowse link
G TONSL tonsoku like, DNA repair protein involved_in ISO (PMID:21055983), (PMID:21055984), (PMID:21055985) UniProt PMID:21055983 PMID:21055984 PMID:21055985 NCBI chr 8:141,195,959...141,211,849
Ensembl chr 8:144,185,674...144,201,040
JBrowse link
G TRAIP TRAF interacting protein involved_in ISO (PMID:26711499)
(PMID:27462463)
UniProt PMID:26711499 PMID:27462463 NCBI chr 3:49,760,528...49,789,637
Ensembl chr 3:50,996,647...51,025,241
JBrowse link
G WRN WRN RecQ like helicase involved_in ISO (PMID:12882351)
(PMID:17115688)
UniProt PMID:12882351 PMID:17115688 NCBI chr 8:30,353,643...30,492,978
Ensembl chr 8:27,541,145...27,679,855
JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 involved_in ISO (PMID:22704558), (PMID:22705370) UniProt PMID:22704558 PMID:22705370 NCBI chr2B:24,331,731...24,665,652
Ensembl chr2B:139,234,909...139,577,193
JBrowse link
DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in ISO (PMID:29670289) UniProt PMID:29670289 NCBI chr11:89,418,537...89,500,705
Ensembl chr11:92,918,549...92,985,966
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:28834754), (PMID:29670289) UniProt PMID:28834754 PMID:29670289 NCBI chr20:33,224,200...33,282,018
Ensembl chr20:34,341,367...34,398,314
JBrowse link
mitotic recombination-dependent replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA2 BRCA2 DNA repair associated involved_in ISO (PMID:21076401) BHF-UCL PMID:21076401 NCBI chr13:13,574,422...13,658,967
Ensembl chr13:32,010,066...32,091,332
JBrowse link
regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZNF365 zinc finger protein 365 involved_in ISO (PMID:23966166) UniProt PMID:23966166 NCBI chr10:58,894,939...58,923,176
Ensembl chr10:61,223,925...61,329,657
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12657
    metabolic process 7931
      cellular metabolic process 7253
        cellular macromolecule metabolic process 5567
          DNA metabolic process 682
            DNA-dependent DNA replication maintenance of fidelity 40
              replication fork processing 35
                DNA strand resection involved in replication fork processing + 3
                mitotic recombination-dependent replication fork processing + 1
                negative regulation of mitotic recombination involved in replication fork processing 0
                replication fork reversal 0
                stalled replication fork localization to nuclear periphery 0
Path 2
Term Annotations click to browse term
  biological_process 12657
    metabolic process 7931
      organic substance metabolic process 7643
        organic substance biosynthetic process 3958
          macromolecule biosynthetic process 3273
            cellular macromolecule biosynthetic process 3230
              DNA replication 193
                DNA-dependent DNA replication 112
                  DNA-dependent DNA replication maintenance of fidelity 40
                    replication fork processing 35
                      DNA strand resection involved in replication fork processing + 3
                      mitotic recombination-dependent replication fork processing + 1
                      negative regulation of mitotic recombination involved in replication fork processing 0
                      replication fork reversal 0
                      stalled replication fork localization to nuclear periphery 0
paths to the root