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ONTOLOGY REPORT - ANNOTATIONS

Term:replication fork processing
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Accession:GO:0031297 term browser browse the term
Definition:The process in which a DNA replication fork that has stalled is restored to a functional state and replication is restarted. The stalling may be due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes.
Synonyms:exact_synonym: collapsed replication fork processing;   recovery from replication fork arrest;   recovery from replication fork stalling
 narrow_synonym: recovery from replication fork arrest at rDNA locus;   recovery from replication fork stalling at rDNA locus;   replication fork processing at rDNA locus;   replication fork processing at ribosomal DNA locus
 related_synonym: replication fork restart;   replication restart
 alt_id: GO:0034065


show annotations for term's descendants           Sort by:
replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in ISO (PMID:29478807) RGD PMID:29478807 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808 		JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO (MGI:6467697|PMID:29125140) RGD PMID:29125140 MGI:6467697 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136 		JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:5568153|PMID:24651726)		 UniProt
Ensembl
RGD		 PMID:24651726 GO_REF:0000024 GO_REF:0000107 MGI:5568153 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330 		JBrowse link
G Blm BLM RecQ like helicase involved_in ISO (PMID:17115688)
(MGI:6467697|PMID:29125140)		 RGD PMID:17115688 PMID:29125140 MGI:6467697 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Bod1l1 biorientation of chromosomes in cell division 1-like 1 involved_in ISO
IBA		 (PMID:26166705)
GO_REF:0000033		 RGD
GO_Central		 PMID:26166705 GO_REF:0000033 NCBI chr14:69,108,483...69,163,255
Ensembl chr14:69,108,491...69,162,490 		JBrowse link
G Brca2 BRCA2, DNA repair associated acts_upstream_of_or_within ISO MGI:1930616 (PMID:14681210) RGD PMID:14681210 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in ISO
IEA		 (PMID:20930849)
GO_REF:0000107		 RGD
Ensembl		 PMID:20930849 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G Cenps centromere protein S involved_in ISO (PMID:20347428) RGD PMID:20347428 NCBI chr 5:159,563,917...159,573,534 JBrowse link
G Cenpx centromere protein X involved_in ISO (PMID:20347428) RGD PMID:20347428 NCBI chr10:105,991,469...105,994,310 JBrowse link
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26503245) RGD PMID:26503245 NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550 		JBrowse link
G Donson DNA replication fork stabilization factor DONSON involved_in ISO (PMID:28191891) RGD PMID:28191891 NCBI chr11:30,919,834...30,933,150
Ensembl chr11:30,923,239...30,932,889 		JBrowse link
G Eme1 essential meiotic structure-specific endonuclease 1 involved_in ISO
IBA		 (PMID:18413719)
GO_REF:0000033		 RGD
GO_Central		 PMID:18413719 GO_REF:0000033 NCBI chr10:79,586,718...79,595,515
Ensembl chr10:79,586,729...79,595,435 		JBrowse link
G Eme2 essential meiotic structure-specific endonuclease subunit 2 involved_in ISO
IBA		 (PMID:17289582)
GO_REF:0000033		 RGD
GO_Central		 PMID:17289582 GO_REF:0000033 NCBI chr10:13,913,216...13,915,991
Ensembl chr10:13,913,221...13,915,968 		JBrowse link
G Etaa1 ETAA1 activator of ATR kinase involved_in ISO
IBA		 (PMID:27723717), (PMID:27723720)
GO_REF:0000033		 RGD
GO_Central		 PMID:27723717 PMID:27723720 GO_REF:0000033 NCBI chr14:92,298,461...92,314,044
Ensembl chr14:92,299,553...92,314,104 		JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in ISO (PMID:31255466) RGD PMID:31255466 NCBI chr 6:100,116,867...100,150,452
Ensembl chr 6:100,116,867...100,150,442 		JBrowse link
G Fam111a FAM111 trypsin like peptidase A involved_in ISO (PMID:32165630) RGD PMID:32165630 NCBI chr 1:209,640,865...209,656,551
Ensembl chr 1:209,640,953...209,656,547 		JBrowse link
G Fancm FA complementation group M involved_in ISO (PMID:20347428) RGD PMID:20347428 NCBI chr 6:83,126,903...83,180,455
Ensembl chr 6:83,127,093...83,180,028 		JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in ISO
IBA		 (PMID:25585578)
GO_REF:0000033
(MGI:5566975|PMID:24108124)		 RGD
GO_Central		 PMID:24108124 PMID:25585578 GO_REF:0000033 MGI:5566975 NCBI chr17:66,749,506...66,787,590
Ensembl chr17:66,749,534...66,787,590 		JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease involved_in ISO (PMID:26578604) RGD PMID:26578604 NCBI chr 6:33,947,599...33,978,461
Ensembl chr 6:33,948,206...33,978,401 		JBrowse link
G Khdc3 KH domain containing 3, subcortical maternal complex member involved_in ISS
ISO		 GO_REF:0000024
(MGI:6467697|PMID:29125140)		 UniProt
RGD		 PMID:29125140 GO_REF:0000024 MGI:6467697 NCBI chr 8:73,842,344...73,844,248
Ensembl chr 8:73,842,344...73,844,248 		JBrowse link
G LOC120094818 TIMELESS-interacting protein-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:113,693,252...113,694,434
Ensembl chr 8:64,780,828...64,801,352 		JBrowse link
G LOC134486336 ewing's tumor-associated antigen 1 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Mms22l MMS22-like, DNA repair protein involved_in ISO
IBA		 (PMID:21055983), (PMID:21055984), (PMID:21055985), (PMID:21113133), (PMID:27797818)
GO_REF:0000033		 RGD
GO_Central		 PMID:21055983 PMID:21055984 PMID:21055985 PMID:21113133 PMID:27797818 GO_REF:0000033 NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745 		JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in ISO
IEA		 (PMID:17289582), (PMID:18413719)
GO_REF:0000107		 RGD
Ensembl		 PMID:17289582 PMID:18413719 GO_REF:0000107 NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843 		JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 involved_in ISO (PMID:26323318) RGD PMID:26323318 NCBI chr13:43,345,091...43,374,316
Ensembl chr13:43,345,115...43,370,229 		JBrowse link
G Ooep oocyte expressed protein involved_in ISO (MGI:6467697|PMID:29125140) RGD PMID:29125140 MGI:6467697 NCBI chr 8:79,223,388...79,224,554
Ensembl chr 8:79,223,375...79,224,541 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO UniProtKB:Q0VGM9 (MGI:5522574|PMID:24115439) RGD PMID:24115439 MGI:5522574 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995 		JBrowse link
G Polq DNA polymerase theta involved_in ISO (PMID:30655289) RGD PMID:30655289 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in IBA
ISO		 GO_REF:0000033
(PMID:24126761), (PMID:24240614), (PMID:24267451), (PMID:28534480)		 GO_Central
RGD		 PMID:24126761 PMID:24240614 PMID:24267451 PMID:28534480 GO_REF:0000033 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565 		JBrowse link
G Rad51 RAD51 recombinase involved_in
acts_upstream_of_or_within		 ISO (PMID:18417535), (PMID:22778135), (PMID:25585578)
MGI:5444025 (PMID:22778135)		 RGD PMID:18417535 PMID:22778135 PMID:25585578 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Recql RecQ like helicase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:35025765)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:35025765 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945 		JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in ISO (PMID:26474068) RGD PMID:26474068 NCBI chr19:39,235,883...39,268,479
Ensembl chr19:39,236,787...39,268,479 		JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5522574|PMID:24115439) RGD PMID:24115439 MGI:5522574 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348 		JBrowse link
G Setmar SET domain and mariner transposase fusion gene involved_in ISO (PMID:20457750), (PMID:22231448), (PMID:24573677) RGD PMID:20457750 PMID:22231448 PMID:24573677 NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197 		JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:19793862)		 UniProt
GO_Central
RGD		 PMID:19793862 GO_REF:0000024 GO_REF:0000033 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146 		JBrowse link
G Tipin timeless interacting protein involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 8:64,780,813...64,801,358
Ensembl chr 8:64,780,828...64,801,352 		JBrowse link
G Tipinl1 TIMELESS interacting protein like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:113,542,841...113,544,022
Ensembl chr 9:113,543,173...113,605,998 		JBrowse link
G Tonsl tonsoku-like, DNA repair protein involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:21055983), (PMID:21055984), (PMID:21055985), (PMID:27338793), (PMID:29478807)		 UniProt
GO_Central
RGD		 PMID:21055983 PMID:21055984 PMID:21055985 PMID:27338793 PMID:29478807 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750 		JBrowse link
G Traip TRAF-interacting protein involved_in ISO
IBA		 (PMID:26711499), (PMID:27462463)
GO_REF:0000033		 RGD
GO_Central		 PMID:26711499 PMID:27462463 GO_REF:0000033 NCBI chr 8:108,641,860...108,661,640
Ensembl chr 8:108,641,852...108,661,638 		JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:12882351), (PMID:17115688) RGD PMID:12882351 PMID:17115688 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in ISO
IBA		 (PMID:22704558), (PMID:22705370)
GO_REF:0000033		 RGD
GO_Central		 PMID:22704558 PMID:22705370 GO_REF:0000033 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670 		JBrowse link
DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exo1 exonuclease 1 involved_in ISO (PMID:26240375) RGD PMID:26240375 NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:27814491), (PMID:27889449), (PMID:29670289), (PMID:30464262), (PMID:30612738), (PMID:30787182), (PMID:37696958)
(MGI:3839734|PMID:18854157)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:18854157 PMID:27814491 PMID:27889449 PMID:29670289 PMID:30464262 More... GO_REF:0000024 GO_REF:0000107 MGI:3839734 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279 		JBrowse link
G Nbn nibrin involved_in IEA
ISO		 GO_REF:0000107
(PMID:27814491), (PMID:27889449), (PMID:30787182)		 Ensembl
RGD		 PMID:27814491 PMID:27889449 PMID:30787182 GO_REF:0000107 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150 		JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in IEA
ISO		 GO_REF:0000107
(PMID:27889449)		 Ensembl
RGD		 PMID:27889449 GO_REF:0000107 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in ISO (PMID:23273981), (PMID:27814491), (PMID:27889449), (PMID:30787182) RGD PMID:23273981 PMID:27814491 PMID:27889449 PMID:30787182 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:28834754), (PMID:29670289) RGD PMID:28834754 PMID:29670289 NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386 		JBrowse link
mitotic recombination-dependent replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2, DNA repair associated involved_in IEA
ISO		 GO_REF:0000107
(PMID:21076401)		 Ensembl
RGD		 PMID:21076401 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Rad51 RAD51 recombinase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
negative regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynll1 dynein light chain LC8-type 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30464262), (PMID:37696958)		 UniProt
RGD		 PMID:30464262 PMID:37696958 GO_REF:0000024 NCBI chr12:41,312,365...41,316,157
Ensembl chr12:41,312,367...41,314,741 		JBrowse link
regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp365 zinc finger protein 365 involved_in ISS
IBA
IEA		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr20:20,666,240...20,689,734
Ensembl chr20:20,666,240...20,691,238 		JBrowse link
replication fork reversal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 involved_in ISO
ISS		 (PMID:33412112)
GO_REF:0000024		 RGD
UniProt		 PMID:33412112 GO_REF:0000024 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:33412112)		 UniProt
RGD		 PMID:33412112 GO_REF:0000024 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:25,691,474...25,717,558
Ensembl chr20:25,662,055...25,716,319 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in ISO (PMID:22704558) RGD PMID:22704558 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      macromolecule metabolic process 10146
        nucleic acid metabolic process 5148
          DNA metabolic process 960
            DNA-templated DNA replication maintenance of fidelity 59
              replication fork processing 53
                DNA strand resection involved in replication fork processing + 8
                mitotic recombination-dependent replication fork processing + 2
                replication fork reversal 5
                stalled replication fork localization to nuclear periphery 0
Path 2
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      primary metabolic process 10923
        nucleobase-containing compound metabolic process 5736
          nucleic acid metabolic process 5148
            DNA metabolic process 960
              DNA replication 272
                DNA-templated DNA replication 161
                  DNA-templated DNA replication maintenance of fidelity 59
                    replication fork processing 53
                      DNA strand resection involved in replication fork processing + 8
                      mitotic recombination-dependent replication fork processing + 2
                      replication fork reversal 5
                      stalled replication fork localization to nuclear periphery 0
paths to the root