ONTOLOGY REPORT - ANNOTATIONS
Term: replication fork processing
Accession: GO:0031297
browse the term
Definition: The process in which a DNA replication fork that has stalled is restored to a functional state and replication is restarted. The stalling may be due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes.
Synonyms: exact_synonym: collapsed replication fork processing; recovery from replication fork arrest; recovery from replication fork stalling
narrow_synonym: recovery from replication fork arrest at rDNA locus; recovery from replication fork stalling at rDNA locus; replication fork processing at rDNA locus; replication fork processing at ribosomal DNA locus
related_synonym: replication fork restart; replication restart
alt_id: GO:0034065
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Alyref
Aly/REF export factor
involved_in
ISO
(PMID:22144908)
RGD
PMID:22144908
NCBI chr10:105,871,306...105,875,076
Ensembl chr10:105,871,306...105,875,069
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Atr
ATR serine/threonine kinase
involved_in
ISO
(MGI:6467697|PMID:29125140)
RGD
PMID:29125140
MGI:6467697
NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
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Atrx
ATRX, chromatin remodeler
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (MGI:5568153|PMID:24651726)
UniProt RGD
PMID:24651726 PMID:21873635
GO_REF:0000024 MGI:5568153 , RGD:13792537
NCBI chr X:70,850,981...70,997,330
Ensembl chr X:70,850,981...70,997,330
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Blm
BLM RecQ like helicase
involved_in
ISO
(PMID:17115688) (MGI:6467697|PMID:29125140)
RGD
PMID:17115688 PMID:29125140
MGI:6467697
NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
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Bod1l1
biorientation of chromosomes in cell division 1-like 1
involved_in
ISO
(PMID:26166705)
RGD
PMID:26166705
NCBI chr14:69,108,483...69,163,255
Ensembl chr14:69,108,491...69,162,490
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Brca2
BRCA2, DNA repair associated
acts_upstream_of_or_within
ISO
MGI:1930616 (MGI:2683861|PMID:14681210)
RGD
PMID:14681210
MGI:2683861
NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
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Cdk9
cyclin-dependent kinase 9
involved_in
ISO
(PMID:20930849)
RGD
PMID:20930849
NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
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Cenps
centromere protein S
involved_in
ISO
(PMID:20347428)
RGD
PMID:20347428
NCBI chr 5:159,563,917...159,573,534
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Cenpx
centromere protein X
involved_in
ISO
(PMID:20347428)
RGD
PMID:20347428
NCBI chr10:105,991,469...105,994,411
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Da2-19
uncharacterized LOC302729
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr X:44,820,693...44,837,935
Ensembl chr X:44,820,820...44,837,934
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Ddx11
DEAD/H-box helicase 11
involved_in
ISO
(PMID:26503245)
RGD
PMID:26503245
NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550
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Eme1
essential meiotic structure-specific endonuclease 1
involved_in
ISO IBA
(PMID:18413719) PMID:21873635
RGD
PMID:18413719 PMID:21873635
RGD:13792537
NCBI chr10:79,586,736...79,595,515
Ensembl chr10:79,586,729...79,595,435
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Eme2
essential meiotic structure-specific endonuclease subunit 2
involved_in
ISO IBA
(PMID:17289582) PMID:21873635
RGD
PMID:17289582 PMID:21873635
RGD:13792537
NCBI chr10:13,913,216...13,915,991
Ensembl chr10:13,913,221...13,915,968
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Etaa1
ETAA1 activator of ATR kinase
involved_in
ISO IBA
(PMID:27723717), (PMID:27723720) PMID:21873635
RGD
PMID:27723717 PMID:27723720 PMID:21873635
RGD:13792537
Ensembl chr14:92,299,553...92,314,104
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Etaa1l1
Ewing tumor-associated antigen 1-like 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr14:92,298,461...92,314,044
Ensembl chr14:92,299,553...92,314,104
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Exd2
exonuclease 3'-5' domain containing 2
involved_in
ISO
(PMID:31255466)
RGD
PMID:31255466
NCBI chr 6:100,116,867...100,150,452
Ensembl chr 6:100,116,867...100,150,442
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Fam111a
FAM111 trypsin like peptidase A
involved_in
ISO
(PMID:32165630)
RGD
PMID:32165630
NCBI chr 1:209,640,865...209,656,551
Ensembl chr 1:209,640,953...209,656,547
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Fancm
FA complementation group M
involved_in
ISO
(PMID:20347428)
RGD
PMID:20347428
NCBI chr 6:83,126,903...83,180,455
Ensembl chr 6:83,127,093...83,180,028
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Fbh1
F-box DNA helicase 1
involved_in
ISO IBA
(PMID:25585578) (MGI:5566975|PMID:24108124) PMID:21873635
RGD
PMID:24108124 PMID:25585578 PMID:21873635
MGI:5566975 , RGD:13792537
NCBI chr17:66,749,506...66,787,590
Ensembl chr17:66,749,534...66,787,590
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Gen1
GEN1 Holliday junction 5' flap endonuclease
involved_in
ISO
(PMID:26578604)
RGD
PMID:26578604
NCBI chr 6:33,947,599...33,978,461
Ensembl chr 6:33,948,206...33,978,401
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Khdc3
KH domain containing 3, subcortical maternal complex member
involved_in
ISS ISO
GO_REF:0000024 (MGI:6467697|PMID:29125140)
UniProt RGD
PMID:29125140
GO_REF:0000024 MGI:6467697
NCBI chr 8:73,842,344...73,844,248
Ensembl chr 8:73,842,344...73,844,248
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Mms22l
MMS22-like, DNA repair protein
involved_in
ISO IBA
(PMID:21055983), (PMID:21055984), (PMID:21055985) (PMID:21055983), (PMID:21055984), (PMID:21055985), (PMID:21113133) PMID:21873635
RGD
PMID:21055983 PMID:21055984 PMID:21055985 PMID:21113133 PMID:21873635
RGD:13792537
NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745
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Mus81
MUS81 structure-specific endonuclease subunit
involved_in
ISO
(PMID:17289582), (PMID:18413719)
RGD
PMID:17289582 PMID:18413719
NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843
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Nucks1
nuclear casein kinase and cyclin-dependent kinase substrate 1
involved_in
ISO
(PMID:26323318)
RGD
PMID:26323318
NCBI chr13:43,345,091...43,374,316
Ensembl chr13:43,345,115...43,370,229
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Ooep
oocyte expressed protein
involved_in
ISO
(MGI:6467697|PMID:29125140)
RGD
PMID:29125140
MGI:6467697
NCBI chr 8:79,223,388...79,224,554
Ensembl chr 8:79,223,375...79,224,541
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Pcna
proliferating cell nuclear antigen
involved_in
ISO
UniProtKB:Q0VGM9 (MGI:5522574|PMID:24115439)
RGD
PMID:24115439
MGI:5522574
NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
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Primpol
primase and DNA directed polymerase
involved_in
IBA ISO
PMID:21873635 (PMID:24240614), (PMID:24267451), (PMID:28534480)
RGD
PMID:24240614 PMID:24267451 PMID:28534480 PMID:21873635
RGD:13792537
NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565
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Rad51
RAD51 recombinase
involved_in acts_upstream_of_or_within
ISO
(PMID:22778135), (PMID:25585578) MGI:5444025 (MGI:5442243|PMID:22778135)
RGD
PMID:22778135 PMID:25585578
MGI:5442243
NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
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Rfwd3
ring finger and WD repeat domain 3
involved_in
ISO
(PMID:26474068)
RGD
PMID:26474068
NCBI chr19:39,235,883...39,268,536
Ensembl chr19:39,236,787...39,268,479
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Rtel1
regulator of telomere elongation helicase 1
involved_in
ISO
(MGI:5522574|PMID:24115439)
RGD
PMID:24115439
MGI:5522574
NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
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Setmar
SET domain and mariner transposase fusion gene
involved_in
ISO
(PMID:20457750), (PMID:22231448), (PMID:24573677)
RGD
PMID:20457750 PMID:22231448 PMID:24573677
NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197
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Smarcal1
Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (PMID:19793862)
UniProt RGD
PMID:19793862 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146
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Thoc1
THO complex subunit 1
involved_in
ISO
(PMID:22144908)
RGD
PMID:22144908
NCBI chr18:983,606...1,020,379
Ensembl chr18:983,824...1,019,114
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Tonsl
tonsoku-like, DNA repair protein
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (PMID:21055983), (PMID:21055984), (PMID:21055985)
UniProt RGD
PMID:21055983 PMID:21055984 PMID:21055985 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750
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Traip
TRAF-interacting protein
involved_in
ISO IBA
(PMID:26711499), (PMID:27462463) PMID:21873635
RGD
PMID:26711499 PMID:27462463 PMID:21873635
RGD:13792537
NCBI chr 8:108,641,860...108,661,640
Ensembl chr 8:108,641,852...108,661,638
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Wrn
WRN RecQ like helicase
involved_in
ISO
(PMID:12882351), (PMID:17115688)
RGD
PMID:12882351 PMID:17115688
NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
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Zranb3
zinc finger RANBP2-type containing 3
involved_in
ISO IBA
(PMID:22704558), (PMID:22705370) PMID:21873635
RGD
PMID:22704558 PMID:22705370 PMID:21873635
RGD:13792537
NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670
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Mre11
MRE11 homolog, double strand break repair nuclease
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:29670289)
UniProt Ensembl RGD
PMID:29670289
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
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Samhd1
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
involved_in
ISO
(PMID:28834754), (PMID:29670289)
RGD
PMID:28834754 PMID:29670289
NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386
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Brca2
BRCA2, DNA repair associated
involved_in
IEA ISO
GO_REF:0000107 (PMID:21076401)
Ensembl RGD
PMID:21076401
GO_REF:0000107
NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
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Rad51
RAD51 recombinase
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
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Zfp365
zinc finger protein 365
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (PMID:23966166)
UniProt RGD
PMID:23966166 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr20:20,666,240...20,689,734
Ensembl chr20:20,666,240...20,691,238
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Carm1
coactivator-associated arginine methyltransferase 1
involved_in
ISO ISS
(PMID:33412112) GO_REF:0000024
RGD UniProt
PMID:33412112
GO_REF:0000024
NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689
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Dna2
DNA replication helicase/nuclease 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
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Fancm
FA complementation group M
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:83,126,903...83,180,455
Ensembl chr 6:83,127,093...83,180,028
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Parp1
poly (ADP-ribose) polymerase 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:33412112)
UniProt RGD
PMID:33412112
GO_REF:0000024
NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
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Zgrf1
zinc finger, GRF-type containing 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:216,012,911...216,075,608
Ensembl chr 2:216,013,005...216,074,750
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