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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic microtubule organization
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Accession:GO:0031122 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell.
Synonyms:exact_synonym: cytoplasmic microtubule organisation
 related_synonym: cytoplasmic microtubule organization and biogenesis



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cytoplasmic microtubule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07026291.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:98956 (MGI:3806438|PMID:18716223) RGD PMID:18716223 MGI:3806438 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI:94941 (MGI:3028427|PMID:14734535) RGD PMID:14734535 MGI:3028427 NCBI chr10:15,163,684...15,215,615
Ensembl chr10:15,163,684...15,215,615
JBrowse link
G Camsap1 calmodulin regulated spectrin-associated protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,746,176...8,806,072
Ensembl chr 3:8,746,176...8,806,072
JBrowse link
G Camsap2 calmodulin regulated spectrin-associated protein family, member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:47,723,121...47,802,597
Ensembl chr13:47,723,121...47,802,597
JBrowse link
G Camsap3 calmodulin regulated spectrin-associated protein family, member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:1,643,062...1,666,685
Ensembl chr12:1,643,251...1,666,685
JBrowse link
G Cav3 caveolin 3 acts_upstream_of_or_within ISO MGI:2180558 (MGI:3761450|PMID:14517320) RGD PMID:14517320 MGI:3761450 NCBI chr 4:145,582,168...145,598,142
Ensembl chr 4:145,582,060...145,598,137
JBrowse link
G Ccdc13 coiled-coil domain containing 13 involved_in ISO
IBA
(PMID:24816561)
PMID:21873635
RGD PMID:24816561 PMID:21873635 RGD:13792537 NCBI chr 8:121,455,202...121,507,487
Ensembl chr 8:121,457,697...121,502,337
JBrowse link
G Ccdc88a coiled coil domain containing 88A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:103,104,091...103,256,112
Ensembl chr14:103,103,513...103,252,368
JBrowse link
G Ccdc88b coiled-coil domain containing 88B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:204,036,913...204,052,878
Ensembl chr 1:204,036,918...204,052,970
JBrowse link
G Ccdc88c coiled-coil domain containing 88C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:120,169,752...120,289,459
Ensembl chr 6:120,169,738...120,289,555
JBrowse link
G Cep126 centrosomal protein 126 involved_in IBA
ISO
PMID:21873635
(PMID:24867236)
RGD PMID:24867236 PMID:21873635 RGD:13792537 NCBI chr 8:5,200,576...5,267,740
Ensembl chr 8:5,218,509...5,267,467
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 involved_in IDA PMID:14657246 UniProt PMID:14657246 RGD:8553982 NCBI chr 3:106,536,009...106,571,255
Ensembl chr 3:106,536,004...106,571,251
JBrowse link
G Cib1 calcium and integrin binding 1 involved_in ISO
ISS
(PMID:20951827)
GO_REF:0000024
RGD
UniProt
PMID:20951827 GO_REF:0000024 NCBI chr 1:134,178,331...134,183,895
Ensembl chr 1:134,178,331...134,213,423
JBrowse link
G Clip1 CAP-GLY domain containing linker protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:32,910,932...33,017,891
Ensembl chr12:32,910,977...33,017,884
JBrowse link
G Clip2 CAP-GLY domain containing linker protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,163,044...22,227,023
Ensembl chr12:22,163,218...22,227,023
JBrowse link
G Clip3 CAP-GLY domain containing linker protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:85,547,170...85,563,187
Ensembl chr 1:85,547,206...85,563,184
JBrowse link
G Clip4 CAP-GLY domain containing linker protein family, member 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:23,616,280...23,697,625
Ensembl chr 6:23,616,281...23,677,874
JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:9581762 PMID:21873635 RGD:632510, RGD:13792537 NCBI chr 6:7,581,428...7,589,384
Ensembl chr 6:7,580,703...7,589,399
JBrowse link
G Dctn1 dynactin subunit 1 involved_in IBA
ISS
PMID:21873635
GO_REF:0000024
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:115,671,024...115,703,824
Ensembl chr 4:115,661,638...115,703,815
JBrowse link
G Dst dystonin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2429314 (MGI:1341473|PMID:10428034)
RGD PMID:10428034 PMID:21873635 MGI:1341473, RGD:13792537 NCBI chr 9:36,135,657...36,529,617
Ensembl chr 9:36,135,284...36,529,615
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO MGI:1096327|MGI:1861437|MGI:98956 (MGI:3028275|PMID:14648878), (MGI:3806438|PMID:18716223) RGD PMID:14648878 PMID:18716223 MGI:3028275 MGI:3806438 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664
JBrowse link
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:129,615,208...129,680,888
Ensembl chr 6:129,609,397...129,680,883
JBrowse link
G Fsd1 fibronectin type III and SPRY domain containing 1 involved_in ISO
IEA
(PMID:12154070), (PMID:12445389)
GO_REF:0000107
RGD
Ensembl
PMID:12154070 PMID:12445389 GO_REF:0000107 NCBI chr 9:818,241...821,761
Ensembl chr 9:818,263...828,185
JBrowse link
G Hook1 hook microtubule-tethering protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856652 (MGI:3624076|PMID:16540102)
RGD PMID:16540102 PMID:21873635 MGI:3624076, RGD:13792537 NCBI chr 5:110,824,501...110,887,791
Ensembl chr 5:110,824,501...110,887,787
JBrowse link
G Hook2 hook microtubule-tethering protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:23,151,869...23,170,139
Ensembl chr19:23,151,870...23,164,181
JBrowse link
G Hook3 hook microtubule-tethering protein 3 involved_in ISO
IBA
(PMID:11238449)
PMID:21873635
RGD PMID:11238449 PMID:21873635 RGD:13792537 NCBI chr16:65,954,293...66,058,812
Ensembl chr16:65,954,350...66,061,338
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5013962|PMID:21703454)
GO_REF:0000107
RGD
Ensembl
PMID:21703454 GO_REF:0000107 MGI:5013962 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:5013962|PMID:21703454) RGD PMID:21703454 MGI:5013962 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Katna1 katanin catalytic subunit A1 acts_upstream_of_or_within
involved_in
ISO (MGI:3579921|PMID:15944385)
(PMID:26929214)
RGD PMID:15944385 PMID:26929214 MGI:3579921 NCBI chr 1:2,202,501...2,244,132
Ensembl chr 1:2,202,490...2,244,131
JBrowse link
G Katnbl1 katanin regulatory subunit B1 like 1 involved_in ISO
IEA
(PMID:26929214)
GO_REF:0000107
RGD
Ensembl
PMID:26929214 GO_REF:0000107 NCBI chr 3:99,183,748...99,225,789
Ensembl chr 3:99,183,716...99,225,786
JBrowse link
G Map10 microtubule-associated protein 10 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:23264731)
UniProt
RGD
PMID:23264731 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr19:53,642,156...53,644,948
Ensembl chr19:53,642,156...53,644,948
JBrowse link
G Pcm1 pericentriolar material 1 involved_in ISO (PMID:22797915), (PMID:24816561) RGD PMID:22797915 PMID:24816561 NCBI chr16:51,008,315...51,105,261
Ensembl chr16:51,008,315...51,105,091
JBrowse link
G Plk3 polo-like kinase 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:20951827)
UniProt
RGD
PMID:20951827 GO_REF:0000024 NCBI chr 5:130,607,142...130,612,317
Ensembl chr 5:130,607,142...130,612,317
JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:31570889) RGD PMID:31570889 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746
JBrowse link
G Slain1 SLAIN motif family, member 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:80,482,818...80,542,461
Ensembl chr15:80,482,367...80,542,350
JBrowse link
G Slain2 SLAIN motif family, member 2 involved_in ISO
IBA
(PMID:21646404)
PMID:21873635
(MGI:5052220|PMID:21646404)
RGD PMID:21646404 PMID:21873635 MGI:5052220, RGD:13792537 NCBI chr14:35,236,034...35,314,186
Ensembl chr14:35,236,041...35,304,678
JBrowse link
G Slk STE20-like kinase involved_in ISO (PMID:18287541) RGD PMID:18287541 NCBI chr 1:246,473,712...246,529,643
Ensembl chr 1:246,473,712...246,526,530
JBrowse link
G Stmn3 stathmin 3 involved_in IEA
ISO
ISS
GO_REF:0000002
(MGI:3706230|PMID:17135267)
InterPro
RGD
PMID:17135267 PMID:17135267 GO_REF:0000002 MGI:3706230, RGD:8554560 NCBI chr 3:168,416,810...168,424,946
Ensembl chr 3:168,416,810...168,425,056
JBrowse link
G Trdn triadin IMP RGD PMID:22505613 RGD:7327226 NCBI chr 1:23,955,651...24,410,494
Ensembl chr 1:23,955,651...24,410,595
JBrowse link
G Tubg1 tubulin, gamma 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:86,052,845...86,059,436
Ensembl chr10:86,052,743...86,059,433
JBrowse link
G Tubg2 tubulin, gamma 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:86,091,205...86,108,053
Ensembl chr10:86,091,188...86,097,580
JBrowse link
G Tubgcp2 tubulin, gamma complex associated protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:194,791,113...194,817,807
Ensembl chr 1:194,792,142...194,817,619
JBrowse link
G Tubgcp3 tubulin, gamma complex associated protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:76,851,859...76,912,499
Ensembl chr16:76,851,810...76,912,499
JBrowse link
G Tubgcp4 tubulin, gamma complex associated protein 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:108,141,081...108,172,207
Ensembl chr 3:108,141,625...108,169,437
JBrowse link
G Tubgcp5 tubulin, gamma complex associated protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:106,636,526...106,672,175
Ensembl chr 1:106,636,526...106,672,175
JBrowse link
G Tubgcp6 tubulin, gamma complex associated protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,177,686...120,198,986
Ensembl chr 7:120,177,686...120,199,011
JBrowse link
G Wdr73 WD repeat domain 73 involved_in ISO (PMID:25466283) RGD PMID:25466283 NCBI chr 1:134,860,329...134,868,475
Ensembl chr 1:134,860,180...134,868,479
JBrowse link
astral microtubule nucleation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpj centromere protein J acts_upstream_of_or_within ISO (PMID:11003675) RGD PMID:11003675 NCBI chr15:30,626,946...30,690,384
Ensembl chr15:30,627,224...30,686,791
JBrowse link
astral microtubule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep120 centrosomal protein 120 acts_upstream_of_or_within ISO (MGI:3762422|PMID:17920017) RGD PMID:17920017 MGI:3762422 NCBI chr18:47,127,979...47,189,964
Ensembl chr18:47,127,981...47,189,964
JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23783028) RGD PMID:23783028 NCBI chr13:29,493,554...29,715,151
Ensembl chr13:29,493,596...29,715,146
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in ISO
IEA
(PMID:20551903)
GO_REF:0000107
RGD
Ensembl
PMID:20551903 GO_REF:0000107 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
JBrowse link
G Ezr ezrin involved_in ISO (PMID:20551903) RGD PMID:20551903 NCBI chr 1:46,967,961...47,011,505
Ensembl chr 1:46,967,658...47,011,505
JBrowse link
G Kpnb1 karyopherin subunit beta 1 involved_in ISO
IEA
(PMID:23783028)
GO_REF:0000107
RGD
Ensembl
PMID:23783028 GO_REF:0000107 NCBI chr10:82,145,662...82,174,437
Ensembl chr10:82,145,420...82,174,605
JBrowse link
G Limk2 LIM domain kinase 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:22328514)
UniProt
RGD
PMID:22328514 GO_REF:0000024 NCBI chr14:78,208,182...78,286,106
Ensembl chr14:78,218,063...78,286,007
JBrowse link
G Numa1 nuclear mitotic apparatus protein 1 involved_in ISO (PMID:12445386) RGD PMID:12445386 NCBI chr 1:156,297,907...156,372,855
Ensembl chr 1:156,326,259...156,372,855
JBrowse link
G Pde4dip phosphodiesterase 4D interacting protein involved_in ISO (PMID:29162697) RGD PMID:29162697 NCBI chr 2:185,293,236...185,490,100
Ensembl chr 2:185,293,214...185,468,379
JBrowse link
G Rab11a RAB11a, member RAS oncogene family involved_in ISO (PMID:24561039) RGD PMID:24561039 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525
JBrowse link
G Tacc2 transforming, acidic coiled-coil containing protein 2 acts_upstream_of_or_within ISO (MGI:3762422|PMID:17920017) RGD PMID:17920017 MGI:3762422 NCBI chr 1:185,139,223...185,327,881
Ensembl chr 1:185,116,111...185,327,881
JBrowse link
G Tacc3 transforming, acidic coiled-coil containing protein 3 acts_upstream_of_or_within ISO (MGI:3762422|PMID:17920017) RGD PMID:17920017 MGI:3762422 NCBI chr14:77,051,209...77,065,343
Ensembl chr14:77,051,215...77,065,219
JBrowse link
G Tppp tubulin polymerization promoting protein involved_in ISO
ISS
(PMID:22328514)
GO_REF:0000024
RGD
UniProt
PMID:22328514 GO_REF:0000024 NCBI chr 1:29,257,111...29,281,134
Ensembl chr 1:29,261,255...29,281,134
JBrowse link
axonemal microtubule depolymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif19 kinesin family member 19 involved_in ISO (MGI:5460922|PMID:23168168) RGD PMID:23168168 MGI:5460922 NCBI chr10:99,800,185...99,826,546
Ensembl chr10:99,799,400...99,826,546
JBrowse link
cortical microtubule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg1 discs large MAGUK scaffold protein 1 involved_in ISO
IEA
(PMID:20551903)
GO_REF:0000107
RGD
Ensembl
PMID:20551903 GO_REF:0000107 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
JBrowse link
G Ezr ezrin involved_in ISO (PMID:20551903) RGD PMID:20551903 NCBI chr 1:46,967,961...47,011,505
Ensembl chr 1:46,967,658...47,011,505
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO (MGI:5293247|PMID:21844209) RGD PMID:21844209 MGI:5293247 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in IDA PMID:20657843 BHF-UCL PMID:20657843 RGD:8553293 NCBI chr12:41,938,533...41,977,517
Ensembl chr12:41,938,560...41,977,517
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      microtubule-based process 950
        microtubule cytoskeleton organization 647
          cytoplasmic microtubule organization 65
            astral microtubule organization + 13
            cortical microtubule organization 4
            cytoplasmic microtubule depolymerization + 1
Path 2
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular component organization or biogenesis 6534
        cellular component organization 6309
          organelle organization 3900
            cytoskeleton organization 1494
              microtubule cytoskeleton organization 647
                cytoplasmic microtubule organization 65
                  astral microtubule organization + 13
                  cortical microtubule organization 4
                  cytoplasmic microtubule depolymerization + 1
paths to the root