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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic microtubule organization
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Accession:GO:0031122 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell.
Synonyms:exact_synonym: cytoplasmic microtubule organisation
 related_synonym: cytoplasmic microtubule organization and biogenesis


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cytoplasmic microtubule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07026291.1 RGD:1600115
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:1624291
G Axin1 axin 1 RGD:1624291
G Camsap1 calmodulin regulated spectrin-associated protein 1 JBrowse link 3 3,373,971 3,434,027 RGD:13792537
G Camsap2 calmodulin regulated spectrin-associated protein family, member 2 JBrowse link 13 53,145,712 53,225,349 RGD:13792537
G Camsap3 calmodulin regulated spectrin-associated protein family, member 3 JBrowse link 12 2,133,935 2,157,403 RGD:13792537
G Cav3 caveolin 3 JBrowse link 4 144,382,945 144,398,919 RGD:1624291
G Ccdc13 coiled-coil domain containing 13 JBrowse link 8 130,436,529 130,475,521 RGD:1624291
RGD:13792537
G Ccdc88a coiled coil domain containing 88A JBrowse link 14 113,771,093 113,936,376 RGD:13792537
G Ccdc88b coiled-coil domain containing 88B JBrowse link 1 222,102,436 222,118,485 RGD:13792537
G Ccdc88c coiled-coil domain containing 88C JBrowse link 6 124,905,811 125,028,011 RGD:13792537
G Cep126 centrosomal protein 126 JBrowse link 8 6,237,838 6,305,127 RGD:1624291
RGD:13792537
G Chp1 calcineurin-like EF-hand protein 1 JBrowse link 3 111,354,506 111,389,998 RGD:8553982
G Cib1 calcium and integrin binding 1 JBrowse link 1 142,014,962 142,020,461 RGD:1624291
RGD:1600115
G Cript CXXC repeat containing interactor of PDZ3 domain JBrowse link 6 10,594,147 10,602,103 RGD:632510
RGD:13792537
G Dctn1 dynactin subunit 1 JBrowse link 4 114,876,770 114,896,567 RGD:1600115
G Dst dystonin JBrowse link 9 37,902,336 38,296,961 RGD:1624291
RGD:13792537
G Dvl1 dishevelled segment polarity protein 1 JBrowse link 5 173,295,948 173,308,014 RGD:1624291
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 JBrowse link 6 134,958,854 135,085,769 RGD:13792537
G Fign fidgetin, microtubule severing factor JBrowse link 3 49,992,250 50,120,601 RGD:13792537
G Fignl1 fidgetin-like 1 JBrowse link 14 91,895,902 91,904,474 RGD:13792537
G Fsd1 fibronectin type III and SPRY domain containing 1 JBrowse link 9 11,076,670 11,080,190 RGD:1624291
G Fsd1 fibronectin type 3 and SPRY domain-containing protein RGD:1600115
G Hook1 hook microtubule-tethering protein 1 JBrowse link 5 114,940,053 115,000,691 RGD:1624291
RGD:13792537
G Hook2 hook microtubule-tethering protein 2 JBrowse link 19 26,106,713 26,119,353 RGD:13792537
G Hook3 hook microtubule-tethering protein 3 JBrowse link 16 70,710,347 70,818,789 RGD:1624291
G Ift172 intraflagellar transport 172 JBrowse link 6 26,390,686 26,485,459 RGD:1624291
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G Katna1 katanin catalytic subunit A1 JBrowse link 1 1,826,170 1,867,786 RGD:1624291
RGD:13792537
G Katnal1 katanin catalytic subunit A1 like 1 JBrowse link 12 7,495,436 7,550,205 RGD:13792537
G Katnal2 katanin catalytic subunit A1 like 2 JBrowse link 18 73,283,756 73,360,367 RGD:13792537
G LOC100910196 katanin p60 ATPase-containing subunit A-like 1-like JBrowse link 12 7,446,804 7,479,232 RGD:13792537
G LOC103690050 katanin p60 ATPase-containing subunit A-like 1 JBrowse link 12 7,208,836 7,273,411 RGD:13792537
G Map10 microtubule-associated protein 10 JBrowse link 19 58,505,811 58,508,603 RGD:1624291
RGD:13792537
RGD:1600115
G Pcm1 pericentriolar material 1 JBrowse link 16 54,040,721 54,137,675 RGD:1624291
G Plk3 polo-like kinase 3 JBrowse link 5 135,997,725 136,002,900 RGD:1624291
RGD:1600115
G Slain2 SLAIN motif family, member 2 JBrowse link 14 37,802,347 37,880,571 RGD:1624291
G Slk STE20-like kinase JBrowse link 1 267,359,761 267,415,735 RGD:1600115
RGD:1624291
G Spast spastin JBrowse link 6 22,230,067 22,282,166 RGD:13792537
G Stmn3 stathmin 3 JBrowse link 3 176,808,016 176,816,108 RGD:1624291
RGD:8554560
RGD:1600115
G Trdn triadin JBrowse link 1 25,403,390 25,787,664 RGD:7327226
G Tubg1 tubulin, gamma 1 JBrowse link 10 89,030,865 89,037,455 RGD:1600115
G Tubg2 tubulin, gamma 2 JBrowse link 10 89,069,223 89,075,589 RGD:1600115
G Tubgcp2 tubulin, gamma complex associated protein 2 JBrowse link 1 212,333,740 212,359,352 RGD:13792537
G Tubgcp3 tubulin, gamma complex associated protein 3 JBrowse link 16 82,184,362 82,245,041 RGD:13792537
G Tubgcp4 tubulin, gamma complex associated protein 4 JBrowse link 3 113,131,292 113,160,750 RGD:13792537
G Tubgcp5 tubulin, gamma complex associated protein 5 JBrowse link 1 114,186,853 114,222,516 RGD:13792537
G Tubgcp6 tubulin, gamma complex associated protein 6 JBrowse link 7 130,080,895 130,102,247 RGD:13792537
G Wdr73 WD repeat domain 73 JBrowse link 1 142,711,955 142,720,292 RGD:1624291
astral microtubule nucleation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpj centromere protein J JBrowse link 15 36,745,672 36,809,228 RGD:1624291
RGD:1600115
astral microtubule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cep120 centrosomal protein 120 JBrowse link 18 48,658,495 48,720,570 RGD:1624291
G Clasp1 cytoplasmic linker associated protein 1 JBrowse link 13 34,365,038 34,584,651 RGD:1624291
G Dlg1 discs large MAGUK scaffold protein 1 JBrowse link 11 72,164,566 72,378,895 RGD:1600115
RGD:1624291
G Ezr ezrin JBrowse link 1 47,287,872 47,331,412 RGD:1624291
G Kpnb1 karyopherin subunit beta 1 JBrowse link 10 85,096,517 85,124,641 RGD:1600115
RGD:1624291
G Limk2 LIM domain kinase 2 JBrowse link 14 83,564,048 83,641,996 RGD:1624291
RGD:1600115
G Numa1 nuclear mitotic apparatus protein 1 JBrowse link 1 167,044,544 167,091,453 RGD:1624291
G Pde4dip phosphodiesterase 4D interacting protein JBrowse link 2 199,867,965 200,066,034 RGD:1624291
G Rab11a RAB11a, member RAS oncogene family JBrowse link 8 70,192,975 70,215,719 RGD:1624291
G Tacc2 transforming, acidic coiled-coil containing protein 2 JBrowse link 1 201,140,264 201,329,612 RGD:1624291
G Tacc3 transforming, acidic coiled-coil containing protein 3 JBrowse link 14 82,336,283 82,350,069 RGD:1624291
G Tppp tubulin polymerization promoting protein JBrowse link 1 31,866,755 31,890,778 RGD:1624291
RGD:1600115
axonemal microtubule depolymerization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kif19 kinesin family member 19 JBrowse link 10 103,308,392 103,334,466 RGD:1624291
cortical microtubule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlg1 discs large MAGUK scaffold protein 1 JBrowse link 11 72,164,566 72,378,895 RGD:1600115
RGD:1624291
G Ezr ezrin JBrowse link 1 47,287,872 47,331,412 RGD:1624291
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 JBrowse link 10 61,456,144 61,577,412 RGD:1624291
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 JBrowse link 12 47,698,915 47,737,902 RGD:8553293

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    cellular process 18179
      microtubule-based process 812
        microtubule cytoskeleton organization 611
          cytoplasmic microtubule organization 65
            astral microtubule organization + 13
            cortical microtubule organization 4
            cytoplasmic microtubule depolymerization + 1
Path 2
Term Annotations click to browse term
  biological_process 19439
    cellular process 18179
      cellular component organization or biogenesis 6367
        cellular component organization 6145
          organelle organization 3856
            cytoskeleton organization 1416
              microtubule cytoskeleton organization 611
                cytoplasmic microtubule organization 65
                  astral microtubule organization + 13
                  cortical microtubule organization 4
                  cytoplasmic microtubule depolymerization + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.