Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic microtubule organization
go back to main search page
Accession:GO:0031122 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell.
Synonyms:exact_synonym: cytoplasmic microtubule organisation
 related_synonym: cytoplasmic microtubule organization and biogenesis


show annotations for term's descendants           Sort by:
 
cytoplasmic microtubule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07026291.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:70,778,913...70,831,164 JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:98956 (MGI:3806438|PMID:18716223) RGD PMID:18716223 MGI:3806438 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI:94941 (MGI:3028427|PMID:14734535) RGD PMID:14734535 MGI:3028427
G Camsap1 calmodulin regulated spectrin-associated protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:3,373,971...3,434,027
Ensembl chr 3:3,373,971...3,434,027
JBrowse link
G Camsap2 calmodulin regulated spectrin-associated protein family, member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:53,145,712...53,225,349
Ensembl chr13:53,145,712...53,225,349
JBrowse link
G Camsap3 calmodulin regulated spectrin-associated protein family, member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:2,133,935...2,157,403
Ensembl chr12:2,134,022...2,157,403
JBrowse link
G Cav3 caveolin 3 acts_upstream_of_or_within ISO MGI:2180558 (MGI:3761450|PMID:14517320) RGD PMID:14517320 MGI:3761450 NCBI chr 4:144,382,945...144,398,919
Ensembl chr 4:144,382,945...144,398,917
JBrowse link
G Ccdc13 coiled-coil domain containing 13 involved_in ISO
IBA
(PMID:24816561)
PMID:21873635
RGD PMID:24816561, PMID:21873635 RGD:13792537 NCBI chr 8:130,436,529...130,475,521
Ensembl chr 8:130,437,157...130,475,320
JBrowse link
G Ccdc88a coiled coil domain containing 88A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:113,771,093...113,936,376
Ensembl chr14:113,867,209...113,932,263
JBrowse link
G Ccdc88b coiled-coil domain containing 88B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:222,102,436...222,118,485
Ensembl chr 1:222,102,437...222,118,459
JBrowse link
G Ccdc88c coiled-coil domain containing 88C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,905,811...125,028,011
Ensembl chr 6:124,905,808...125,027,553
JBrowse link
G Cep126 centrosomal protein 126 involved_in IBA
ISO
PMID:21873635
(PMID:24867236)
RGD PMID:24867236, PMID:21873635 RGD:13792537 NCBI chr 8:6,237,838...6,305,127
Ensembl chr 8:6,255,850...6,305,033
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 involved_in IDA PMID:14657246 UniProt PMID:14657246 RGD:8553982 NCBI chr 3:111,354,506...111,389,998
Ensembl chr 3:111,354,506...111,389,989
JBrowse link
G Cib1 calcium and integrin binding 1 involved_in ISO
ISS
(PMID:20951827)
GO_REF:0000024
RGD
UniProt
PMID:20951827 GO_REF:0000024 NCBI chr 1:142,014,962...142,020,461
Ensembl chr 1:142,014,958...142,020,525
JBrowse link
G Clip1 CAP-GLY domain containing linker protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:38,345,203...38,452,650
Ensembl chr12:38,345,456...38,452,652
JBrowse link
G Clip2 CAP-GLY domain containing linker protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:25,172,957...25,236,935
Ensembl chr12:25,173,005...25,237,009
JBrowse link
G Clip3 CAP-GLY domain containing linker protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:88,750,453...88,766,453
Ensembl chr 1:90,962,707...90,978,907
JBrowse link
G Clip4 CAP-GLY domain containing linker protein family, member 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:23,222,020...23,316,962
Ensembl chr 6:23,222,021...23,316,962
JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:9581762, PMID:21873635 RGD:632510, RGD:13792537 NCBI chr 6:10,594,147...10,602,103
Ensembl chr 6:10,594,122...10,602,085
JBrowse link
G Dctn1 dynactin subunit 1 involved_in IBA
ISS
PMID:21873635
GO_REF:0000024
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:114,876,770...114,896,567
Ensembl chr 4:114,876,770...114,896,573
JBrowse link
G Dst dystonin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2429314 (MGI:1341473|PMID:10428034)
RGD PMID:10428034, PMID:21873635 MGI:1341473, RGD:13792537 NCBI chr 9:37,902,336...38,296,961
Ensembl chr 9:37,902,303...38,196,273
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO MGI:1096327|MGI:1861437|MGI:98956 (MGI:3028275|PMID:14648878), (MGI:3806438|PMID:18716223) RGD PMID:14648878 PMID:18716223 MGI:3028275 MGI:3806438 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:134,958,854...135,085,769
Ensembl chr 6:134,958,854...135,085,769
JBrowse link
G Fign fidgetin, microtubule severing factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:49,992,250...50,120,601
Ensembl chr 3:49,992,397...50,120,392
JBrowse link
G Fignl1 fidgetin-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:91,895,902...91,904,474
Ensembl chr14:91,895,909...91,904,433
JBrowse link
G Fsd1 fibronectin type III and SPRY domain containing 1 involved_in ISO
IEA
(PMID:12154070), (PMID:12445389)
GO_REF:0000107
RGD
Ensembl
PMID:12154070 PMID:12445389 GO_REF:0000107 NCBI chr 9:11,076,670...11,080,190
Ensembl chr 9:11,067,369...11,080,155
JBrowse link
G Hook1 hook microtubule-tethering protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856652 (MGI:3624076|PMID:16540102)
RGD PMID:16540102, PMID:21873635 MGI:3624076, RGD:13792537 NCBI chr 5:114,940,053...115,000,691
Ensembl chr 5:114,940,053...115,000,691
JBrowse link
G Hook2 hook microtubule-tethering protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:26,106,713...26,119,353
Ensembl chr19:26,106,838...26,119,352
JBrowse link
G Hook3 hook microtubule-tethering protein 3 involved_in ISO (PMID:11238449) RGD PMID:11238449 NCBI chr16:70,710,347...70,818,789 JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (MGI:5013962|PMID:21703454) RGD PMID:21703454 MGI:5013962 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:5013962|PMID:21703454) RGD PMID:21703454 MGI:5013962 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Katna1 katanin catalytic subunit A1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3579921|PMID:15944385)
RGD PMID:15944385, PMID:21873635 MGI:3579921, RGD:13792537 NCBI chr 1:1,826,170...1,867,786
Ensembl chr 1:1,825,872...1,867,787
JBrowse link
G Katnal1 katanin catalytic subunit A1 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:7,495,436...7,550,205
Ensembl chr12:7,208,850...7,271,872
Ensembl chr12:7,208,850...7,271,872
JBrowse link
G Katnal2 katanin catalytic subunit A1 like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:73,283,756...73,360,367
Ensembl chr18:73,283,748...73,360,373
JBrowse link
G Map10 microtubule-associated protein 10 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:23264731)
UniProt
RGD
PMID:23264731, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr19:58,505,811...58,508,603
Ensembl chr19:58,505,811...58,508,603
JBrowse link
G Pcm1 pericentriolar material 1 involved_in ISO (PMID:22797915), (PMID:24816561) RGD PMID:22797915 PMID:24816561 NCBI chr16:54,040,721...54,137,675
Ensembl chr16:54,040,721...54,137,660
JBrowse link
G Plk3 polo-like kinase 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:20951827)
UniProt
RGD
PMID:20951827 GO_REF:0000024 NCBI chr 5:135,997,725...136,002,900
Ensembl chr 5:135,997,725...136,002,900
JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:31570889) RGD PMID:31570889 NCBI chr 8:117,082,440...117,116,244
Ensembl chr 8:117,106,576...117,116,167
JBrowse link
G Slain2 SLAIN motif family, member 2 involved_in ISO (PMID:21646404)
(MGI:5052220|PMID:21646404)
RGD PMID:21646404 MGI:5052220 NCBI chr14:37,802,347...37,880,571
Ensembl chr14:37,802,365...37,871,051
JBrowse link
G Slk STE20-like kinase involved_in IEA
ISO
GO_REF:0000107
(PMID:18287541)
Ensembl
RGD
PMID:18287541 GO_REF:0000107 NCBI chr 1:267,359,761...267,415,735
Ensembl chr 1:267,359,830...267,412,810
JBrowse link
G Spast spastin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:22,230,067...22,282,166
Ensembl chr 6:22,230,928...22,281,886
JBrowse link
G Stmn3 stathmin 3 involved_in IEA
ISO
ISS
GO_REF:0000002
(MGI:3706230|PMID:17135267)
GO_REF:0000107
InterPro
RGD
Ensembl
PMID:17135267, PMID:17135267 GO_REF:0000002 GO_REF:0000107 MGI:3706230, RGD:8554560 NCBI chr 3:176,808,016...176,816,108
Ensembl chr 3:176,808,017...176,816,162
JBrowse link
G Trdn triadin IMP RGD PMID:22505613 RGD:7327226 NCBI chr 1:25,403,390...25,787,664
Ensembl chr 1:25,403,390...25,839,345
JBrowse link
G Tubg1 tubulin, gamma 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:89,030,865...89,037,455
Ensembl chr10:89,030,865...89,037,455
JBrowse link
G Tubg2 tubulin, gamma 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:89,069,223...89,075,589
Ensembl chr10:89,069,256...89,075,585
JBrowse link
G Tubgcp2 tubulin, gamma complex associated protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:212,333,740...212,359,352
Ensembl chr 1:212,333,741...212,354,273
JBrowse link
G Tubgcp3 tubulin, gamma complex associated protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:82,184,362...82,245,041
Ensembl chr16:82,184,387...82,245,041
JBrowse link
G Tubgcp4 tubulin, gamma complex associated protein 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:113,131,292...113,160,750
Ensembl chr 3:113,131,327...113,158,720
JBrowse link
G Tubgcp5 tubulin, gamma complex associated protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:114,186,853...114,222,516
Ensembl chr 1:114,186,853...114,222,516
JBrowse link
G Tubgcp6 tubulin, gamma complex associated protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:130,080,895...130,102,247
Ensembl chr 7:130,080,895...130,101,858
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:26,825,261...26,850,460
Ensembl chr13:26,825,261...26,850,460
JBrowse link
G Wdr73 WD repeat domain 73 involved_in ISO
IBA
(PMID:25466283)
PMID:21873635
RGD PMID:25466283, PMID:21873635 RGD:13792537 NCBI chr 1:142,711,955...142,720,292
Ensembl chr 1:142,711,789...142,720,257
JBrowse link
astral microtubule nucleation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpj centromere protein J acts_upstream_of_or_within ISO (PMID:11003675) RGD PMID:11003675 NCBI chr15:36,745,672...36,809,228
Ensembl chr15:36,746,088...36,798,814
JBrowse link
astral microtubule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep120 centrosomal protein 120 acts_upstream_of_or_within ISO (MGI:3762422|PMID:17920017) RGD PMID:17920017 MGI:3762422 NCBI chr18:48,658,495...48,720,570
Ensembl chr18:48,658,495...48,720,472
JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23783028) RGD PMID:23783028 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in ISO
IEA
(PMID:20551903)
GO_REF:0000107
RGD
Ensembl
PMID:20551903 GO_REF:0000107 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Ezr ezrin involved_in ISO (PMID:20551903) RGD PMID:20551903 NCBI chr 1:47,287,872...47,331,412
Ensembl chr 1:47,287,874...47,331,412
JBrowse link
G Kpnb1 karyopherin subunit beta 1 involved_in ISO
IEA
(PMID:23783028)
GO_REF:0000107
RGD
Ensembl
PMID:23783028 GO_REF:0000107 NCBI chr10:85,096,517...85,124,641
Ensembl chr10:85,093,841...85,124,644
JBrowse link
G Limk2 LIM domain kinase 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:22328514)
UniProt
RGD
PMID:22328514 GO_REF:0000024 NCBI chr14:83,564,048...83,641,996
Ensembl chr14:83,573,928...83,641,892
JBrowse link
G Numa1 nuclear mitotic apparatus protein 1 involved_in ISO (PMID:12445386) RGD PMID:12445386 NCBI chr 1:167,044,544...167,091,453
Ensembl chr 1:167,051,209...167,091,453
JBrowse link
G Pde4dip phosphodiesterase 4D interacting protein involved_in ISO (PMID:29162697) RGD PMID:29162697 NCBI chr 2:199,867,965...200,066,034
Ensembl chr 2:199,867,972...200,003,443
JBrowse link
G Rab11a RAB11a, member RAS oncogene family involved_in ISO (PMID:24561039) RGD PMID:24561039 NCBI chr 8:70,192,975...70,215,719
Ensembl chr 8:70,192,975...70,215,719
JBrowse link
G Tacc2 transforming, acidic coiled-coil containing protein 2 acts_upstream_of_or_within ISO (MGI:3762422|PMID:17920017) RGD PMID:17920017 MGI:3762422 NCBI chr 1:201,140,264...201,329,612
Ensembl chr 1:201,055,644...201,329,622
JBrowse link
G Tacc3 transforming, acidic coiled-coil containing protein 3 acts_upstream_of_or_within ISO (MGI:3762422|PMID:17920017) RGD PMID:17920017 MGI:3762422 NCBI chr14:82,336,283...82,350,069
Ensembl chr14:82,336,324...82,347,679
JBrowse link
G Tppp tubulin polymerization promoting protein involved_in ISO
ISS
(PMID:22328514)
GO_REF:0000024
RGD
UniProt
PMID:22328514 GO_REF:0000024 NCBI chr 1:31,866,755...31,890,778
Ensembl chr 1:31,870,899...31,890,778
JBrowse link
axonemal microtubule depolymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif19 kinesin family member 19 involved_in ISO (MGI:5460922|PMID:23168168) RGD PMID:23168168 MGI:5460922 NCBI chr10:103,308,392...103,334,466
Ensembl chr10:103,308,392...103,334,466
JBrowse link
cortical microtubule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg1 discs large MAGUK scaffold protein 1 involved_in ISO
IEA
(PMID:20551903)
GO_REF:0000107
RGD
Ensembl
PMID:20551903 GO_REF:0000107 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Ezr ezrin involved_in ISO (PMID:20551903) RGD PMID:20551903 NCBI chr 1:47,287,872...47,331,412
Ensembl chr 1:47,287,874...47,331,412
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO (MGI:5293247|PMID:21844209) RGD PMID:21844209 MGI:5293247 NCBI chr10:61,456,144...61,577,412
Ensembl chr10:61,456,145...61,577,412
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in IDA PMID:20657843 BHF-UCL PMID:20657843 RGD:8553293 NCBI chr12:47,698,915...47,737,902
Ensembl chr12:47,698,947...47,737,902
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    cellular process 18343
      microtubule-based process 938
        microtubule cytoskeleton organization 639
          cytoplasmic microtubule organization 68
            astral microtubule organization + 13
            cortical microtubule organization 4
            cytoplasmic microtubule depolymerization + 1
Path 2
Term Annotations click to browse term
  biological_process 19491
    cellular process 18343
      cellular component organization or biogenesis 6721
        cellular component organization 6481
          organelle organization 4060
            cytoskeleton organization 1453
              microtubule cytoskeleton organization 639
                cytoplasmic microtubule organization 68
                  astral microtubule organization + 13
                  cortical microtubule organization 4
                  cytoplasmic microtubule depolymerization + 1
paths to the root