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ONTOLOGY REPORT - ANNOTATIONS

Term:positive regulation of histone modification
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Accession:GO:0031058 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of the covalent alteration of a histone.
Synonyms:exact_synonym: up regulation of histone modification;   upregulation of histone modification
 narrow_synonym: activation of histone modification;   stimulation of histone modification

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positive regulation of histone modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ube2n ubiquitin-conjugating enzyme E2N involved_in ISO (PMID:17349954) RGD PMID:17349954 NCBI chr 7:36,610,147...36,640,190
Ensembl chr 7:36,610,147...36,640,189 		JBrowse link
positive regulation of histone acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein involved_in ISO UniProtKB:P05067:PRO_0000000097|UniProtKB:P05067:PRO_0000000098 (PMID:19057576)
UniProtKB:P05067:PRO_0000000098|UniProtKB:P05067:PRO_0000000099 (PMID:19057576)
UniProtKB:P05067:PRO_0000000097|UniProtKB:P05067:PRO_0000000099 (PMID:19057576)		 RGD PMID:19057576 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858 		JBrowse link
G Arid5a AT-rich interaction domain 5A acts_upstream_of_or_within ISO (MGI:5317270|PMID:21346191) RGD PMID:21346191 MGI:5317270 NCBI chr 9:42,871,907...42,886,725
Ensembl chr 9:42,871,950...42,884,855 		JBrowse link
G Arrb1 arrestin, beta 1 involved_in ISO (PMID:16325578) RGD PMID:16325578 NCBI chr 1:164,502,099...164,573,947
Ensembl chr 1:164,502,389...164,593,139 		JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in ISO
IBA		 (PMID:20820192)
(MGI:5009779|PMID:20820192)
PMID:21873635		 RGD PMID:20820192, PMID:21873635 MGI:5009779, RGD:13792537 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681 		JBrowse link
G Brd7 bromodomain containing 7 involved_in ISO (PMID:20228809) RGD PMID:20228809 NCBI chr19:19,672,780...19,701,484
Ensembl chr19:19,672,856...19,701,484 		JBrowse link
G Ep300 E1A binding protein p300 IMP RGD PMID:25263804 RGD:9588307 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296 		JBrowse link
G Foxp3 forkhead box P3 involved_in
acts_upstream_of_or_within		 ISO (PMID:19276356)
(MGI:3697020|PMID:17028180)		 RGD PMID:17028180 PMID:19276356 MGI:3697020 NCBI chr  X:15,753,175...15,768,648
Ensembl chr  X:15,753,175...15,768,522 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog involved_in ISO (PMID:29759984) RGD PMID:29759984 NCBI chr10:10,725,830...10,759,471
Ensembl chr10:10,725,819...10,761,279 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in ISO (MGI:5565664|PMID:24147056) RGD PMID:24147056 MGI:5565664 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436 		JBrowse link
G Kat2a lysine acetyltransferase 2A IMP RGD PMID:20835911 RGD:8693751 NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 involved_in ISO (PMID:20018936) RGD PMID:20018936 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975 		JBrowse link
G Nap1l2 nucleosome assembly protein 1-like 2 acts_upstream_of_or_within ISO (MGI:3723398|PMID:17591696) RGD PMID:17591696 MGI:3723398 NCBI chr  X:73,997,274...73,999,677 JBrowse link
G Nos1 nitric oxide synthase 1 involved_in ISO (MGI:4839449|PMID:16427017) RGD PMID:16427017 MGI:4839449 NCBI chr12:44,214,949...44,405,530
Ensembl chr12:44,213,943...44,520,341 		JBrowse link
G Paxip1 PAX interacting protein 1 involved_in ISO (MGI:4821506|PMID:20671152) RGD PMID:20671152 MGI:4821506 NCBI chr 4:3,956,931...4,008,326
Ensembl chr 4:3,959,640...4,008,326 		JBrowse link
G Rps6ka4 ribosomal protein S6 kinase A4 involved_in ISO (PMID:20018936) RGD PMID:20018936 NCBI chr 1:222,087,328...222,098,284
Ensembl chr 1:222,087,326...222,098,297 		JBrowse link
G Rps6ka5 ribosomal protein S6 kinase A5 involved_in ISO (PMID:20018936) RGD PMID:20018936 NCBI chr 6:124,557,892...124,735,787
Ensembl chr 6:124,557,913...124,735,778 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:23637611) RGD PMID:23637611 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852 		JBrowse link
G Snai2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO (MGI:3770601|PMID:17905753) RGD PMID:17905753 MGI:3770601 NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797 		JBrowse link
G Tada2a transcriptional adaptor 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:71,393,701...71,441,435
Ensembl chr10:71,393,692...71,441,389 		JBrowse link
G Tada2b transcriptional adaptor 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:79,446,057...79,457,341
Ensembl chr14:79,446,057...79,457,333 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (MGI:3584056|PMID:15990875) RGD PMID:15990875 MGI:3584056 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199 		JBrowse link
positive regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 acts_upstream_of_or_within ISO (MGI:5902654|PMID:27798112) RGD PMID:27798112 MGI:5902654 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584 		JBrowse link
G Pink1 PTEN induced kinase 1 acts_upstream_of_or_within ISO (MGI:5617128|PMID:25305081) RGD PMID:25305081 MGI:5617128 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Prkd1 protein kinase D1 involved_in ISO UniProtKB:Q9BZL6 (PMID:20497126) RGD PMID:20497126 NCBI chr 6:71,035,017...71,349,531
Ensembl chr 6:71,035,332...71,349,249 		JBrowse link
G Prkd2 protein kinase D2 involved_in ISO UniProtKB:Q15139 (PMID:20497126) RGD PMID:20497126 NCBI chr 1:78,767,911...78,796,223
Ensembl chr 1:78,767,911...78,796,231 		JBrowse link
G RGD735065 similar to GI:13385412-like protein splice form I involved_in ISO
IBA
ISS		 (PMID:23460338)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:23460338, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr20:6,869,870...6,910,022
Ensembl chr20:6,869,767...6,905,194 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (PMID:20497126) RGD PMID:20497126 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681 		JBrowse link
positive regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 involved_in ISO (PMID:16980585) RGD PMID:16980585 NCBI chr 7:14,323,298...14,339,953
Ensembl chr 7:14,324,104...14,351,918 		JBrowse link
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:16980585) RGD PMID:16980585 NCBI chr 7:14,340,168...14,369,835
Ensembl chr 7:14,340,170...14,369,821 		JBrowse link
G Aplnr apelin receptor acts_upstream_of ISO (MGI:5584055|PMID:23603510) RGD PMID:23603510 MGI:5584055 NCBI chr 3:72,540,538...72,544,183
Ensembl chr 3:72,540,538...72,544,182 		JBrowse link
G Bcl6 BCL6, transcription repressor acts_upstream_of_or_within ISO MGI:2135607 (MGI:5493185|PMID:23160044) RGD PMID:23160044 MGI:5493185 NCBI chr11:80,255,790...80,279,075
Ensembl chr11:80,255,790...80,279,075 		JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in ISO
IEA		 (PMID:21102443)
GO_REF:0000107		 RGD
Ensembl		 PMID:21102443 GO_REF:0000107 NCBI chr14:82,762,109...82,789,350
Ensembl chr14:82,762,190...82,789,319 		JBrowse link
G Ing2 inhibitor of growth family, member 2 involved_in ISO (MGI:4867787|PMID:21124965) RGD PMID:21124965 MGI:4867787 NCBI chr16:47,714,756...47,725,836
Ensembl chr16:47,717,951...47,725,836 		JBrowse link
G Jdp2 Jun dimerization protein 2 acts_upstream_of_or_within ISO MGI:1343091 (MGI:3807603|PMID:17464331) RGD PMID:17464331 MGI:3807603 NCBI chr 6:109,464,910...109,505,591
Ensembl chr 6:109,466,060...109,505,161 		JBrowse link
G Lpin1 lipin 1 acts_upstream_of_or_within ISO (MGI:4819323|PMID:20385772) RGD PMID:20385772 MGI:4819323 NCBI chr 6:41,796,214...41,905,149
Ensembl chr 6:41,799,749...41,870,046 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 acts_upstream_of_or_within ISO (MGI:3821398|PMID:19037247) RGD PMID:19037247 MGI:3821398 NCBI chr10:48,629,121...48,772,890
Ensembl chr10:48,629,121...48,772,890 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:18854353) RGD PMID:18854353 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820 		JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (PMID:11259576) RGD PMID:11259576 NCBI chr 8:63,002,515...63,034,310
Ensembl chr 8:63,004,870...63,034,226 		JBrowse link
G Sap30bp SAP30 binding protein involved_in ISO (PMID:21221920) RGD PMID:21221920 NCBI chr10:104,483,011...104,514,513
Ensembl chr10:104,483,042...104,515,684 		JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 involved_in ISO (PMID:16691198) RGD PMID:16691198 NCBI chr 5:16,904,926...16,930,111
Ensembl chr 5:16,904,926...16,930,075 		JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 acts_upstream_of_or_within ISO (MGI:3760208|PMID:17636037) RGD PMID:17636037 MGI:3760208 NCBI chr10:46,570,996...46,593,021
Ensembl chr10:46,570,996...46,593,009 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (MGI:3528807|PMID:15657445), (MGI:3584056|PMID:15990875) RGD PMID:15657445 PMID:15990875 MGI:3528807 MGI:3584056 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (MGI:3528807|PMID:15657445) RGD PMID:15657445 MGI:3528807 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in ISO (MGI:5446998|PMID:22730529) RGD PMID:22730529 MGI:5446998 NCBI chr 2:188,704,989...188,719,674
Ensembl chr 2:188,704,687...188,718,704 		JBrowse link
positive regulation of histone deubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) RGD PMID:24526689 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096 		JBrowse link
positive regulation of histone H2B ubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk9 cyclin-dependent kinase 9 involved_in ISO (PMID:19575011)
(MGI:5616315|PMID:19575011)		 RGD PMID:19575011 MGI:5616315 NCBI chr 3:11,742,269...11,747,117
Ensembl chr 3:11,742,266...11,747,113 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165 		JBrowse link
G Rnf20 ring finger protein 20 involved_in ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 5:64,892,996...64,920,397
Ensembl chr 5:64,892,802...64,920,390 		JBrowse link
G Rnf40 ring finger protein 40 involved_in ISO (PMID:19575011)
(MGI:5616315|PMID:19575011)		 RGD PMID:19575011 MGI:5616315 NCBI chr 1:199,037,472...199,052,823
Ensembl chr 1:199,037,544...199,052,172 		JBrowse link
positive regulation of histone H3-K14 acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:3046385|PMID:15087456) RGD PMID:15087456 MGI:3046385 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681 		JBrowse link
G Kat2b lysine acetyltransferase 2B IMP RGD PMID:20094059 RGD:7364756 NCBI chr 9:4,440,982...4,492,949 JBrowse link
G Nap1l2 nucleosome assembly protein 1-like 2 acts_upstream_of_or_within ISO (MGI:3723398|PMID:17591696) RGD PMID:17591696 MGI:3723398 NCBI chr  X:73,997,274...73,999,677 JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:5308479|PMID:22110608) RGD PMID:22110608 MGI:5308479 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001 		JBrowse link
G Wbp2 WW domain binding protein 2 involved_in ISO
IEA		 (PMID:23233354)
GO_REF:0000107		 RGD
Ensembl		 PMID:23233354 GO_REF:0000107 NCBI chr10:104,629,563...104,637,906
Ensembl chr10:104,630,573...104,637,823 		JBrowse link
positive regulation of histone H3-K27 acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lif LIF, interleukin 6 family cytokine involved_in ISO
IEA		 (PMID:22783022)
GO_REF:0000107		 RGD
Ensembl		 PMID:22783022 GO_REF:0000107 NCBI chr14:84,482,652...84,500,574
Ensembl chr14:84,482,674...84,500,642 		JBrowse link
positive regulation of histone H3-K27 methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eed embryonic ectoderm development acts_upstream_of_or_within ISO (MGI:4844067|PMID:17997413) RGD PMID:17997413 MGI:4844067 NCBI chr 1:154,189,252...154,216,340
Ensembl chr 1:154,189,260...154,216,340 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in ISO (MGI:4429983|PMID:20144788), (MGI:4946172|PMID:21059868) RGD PMID:20144788 PMID:21059868 MGI:4429983 MGI:4946172 NCBI chr14:2,656,776...2,701,027
Ensembl chr14:2,658,267...2,700,977 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:24474760)		 Ensembl
UniProt
RGD		 PMID:24474760 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:71,540,870...71,585,906
Ensembl chr  X:71,528,988...71,585,908 		JBrowse link
G Phf1 PHD finger protein 1 involved_in ISO (PMID:23273982) RGD PMID:23273982 NCBI chr20:5,526,926...5,531,940
Ensembl chr20:5,526,961...5,531,941 		JBrowse link
G Phf19 PHD finger protein 19 involved_in ISO (PMID:23104054)
(MGI:5318799|PMID:22438827), (MGI:5487476|PMID:23104054)		 RGD PMID:22438827 PMID:23104054 MGI:5318799 MGI:5487476 NCBI chr 3:13,957,136...13,978,283
Ensembl chr 3:13,957,136...13,978,224 		JBrowse link
positive regulation of histone H3-K27 trimethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO MGI:3840841 (MGI:3840399|PMID:19270745) RGD PMID:19270745 MGI:3840399 NCBI chr 6:27,835,346...27,919,285
Ensembl chr 6:27,887,797...27,915,563 		JBrowse link
G Kpna7 karyopherin subunit alpha 7 acts_upstream_of_or_within ISO MGI:6108355 (MGI:5913752|PMID:20699224) RGD PMID:20699224 MGI:5913752 NCBI chr12:11,347,631...11,378,810
Ensembl chr12:11,347,643...11,384,349 		JBrowse link
G Lcor ligand dependent nuclear receptor corepressor involved_in ISO (MGI:6159308|PMID:29628311) RGD PMID:29628311 MGI:6159308 NCBI chr 1:260,775,091...260,839,549
NCBI chr 1:260,789,955...260,809,051
Ensembl chr 1:260,732,485...260,830,854 		JBrowse link
positive regulation of histone H3-K36 methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paxip1 PAX interacting protein 1 involved_in ISO (MGI:4821506|PMID:20671152) RGD PMID:20671152 MGI:4821506 NCBI chr 4:3,956,931...4,008,326
Ensembl chr 4:3,959,640...4,008,326 		JBrowse link
positive regulation of histone H3-K36 trimethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 involved_in ISO (PMID:21555454) RGD PMID:21555454 NCBI chr 7:14,222,101...14,303,055
Ensembl chr 7:14,222,101...14,303,055 		JBrowse link
G Nsd3 nuclear receptor binding SET domain protein 3 involved_in ISO (PMID:21555454) RGD PMID:21555454 NCBI chr16:71,126,276...71,237,118
Ensembl chr16:71,130,668...71,237,118 		JBrowse link
G Prdm9 PR/SET domain 9 involved_in ISO
ISS		 (PMID:24634223)
GO_REF:0000024		 RGD
UniProt		 PMID:24634223 GO_REF:0000024 NCBI chr 1:57,533,602...57,555,155
Ensembl chr 1:57,533,577...57,555,048 		JBrowse link
positive regulation of histone H3-K4 methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Auts2 activator of transcription and developmental regulator AUTS2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25519132)
GO_REF:0000107		 RGD
Ensembl		 PMID:25519132 GO_REF:0000107 NCBI chr12:27,155,362...28,252,752
Ensembl chr12:28,212,333...28,251,816 		JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in IEA
ISO		 GO_REF:0000107
(MGI:5009779|PMID:20820192)
(PMID:20820192)		 Ensembl
RGD		 PMID:20820192 GO_REF:0000107 MGI:5009779 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5428344|PMID:22723415)		 Ensembl
RGD		 PMID:22723415 GO_REF:0000107 MGI:5428344 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:16024656)
(MGI:3849235|PMID:19345177)		 RGD PMID:16024656 PMID:19345177 MGI:3849235 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165 		JBrowse link
G Dnmt1 DNA methyltransferase 1 involved_in ISO
IEA		 (PMID:18413740)
GO_REF:0000107		 RGD
Ensembl		 PMID:18413740 GO_REF:0000107 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta involved_in ISO (PMID:18413740) RGD PMID:18413740 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786 		JBrowse link
G Gcg glucagon involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1344416|MGI:1918367|MGI:2155884 (MGI:5529403|PMID:24051374)		 Ensembl
RGD		 PMID:24051374 GO_REF:0000107 MGI:5529403 NCBI chr 3:48,442,635...48,451,650
Ensembl chr 3:48,442,635...48,451,650 		JBrowse link
G Kmt2a lysine methyltransferase 2A involved_in ISO (MGI:5607228|PMID:21113167) RGD PMID:21113167 MGI:5607228 NCBI chr 8:49,110,407...49,185,872
Ensembl chr 8:49,114,990...49,158,971 		JBrowse link
G Myb MYB proto-oncogene, transcription factor involved_in ISO (PMID:20484083) RGD PMID:20484083 NCBI chr 1:16,658,178...16,690,135
Ensembl chr 1:16,659,442...16,687,817 		JBrowse link
G Nelfa negative elongation factor complex member A IMP RGD PMID:21623364 RGD:9693718 NCBI chr14:82,093,837...82,117,913
Ensembl chr14:82,093,837...82,117,906 		JBrowse link
G Nelfe negative elongation factor complex member E IMP RGD PMID:21623364 RGD:9693718 NCBI chr20:4,530,328...4,536,085
Ensembl chr20:4,530,342...4,536,209 		JBrowse link
G Paxip1 PAX interacting protein 1 involved_in ISO (MGI:4354659|PMID:19583951), (MGI:4821506|PMID:20671152) RGD PMID:19583951 PMID:20671152 MGI:4354659 MGI:4821506 NCBI chr 4:3,956,931...4,008,326
Ensembl chr 4:3,959,640...4,008,326 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) involved_in ISO (MGI:3849235|PMID:19345177) RGD PMID:19345177 MGI:3849235 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO		 GO_REF:0000107
(MGI:3769957|PMID:16330325)		 Ensembl
RGD		 PMID:16330325 GO_REF:0000107 MGI:3769957 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199 		JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:19818711) RGD PMID:19818711 NCBI chr 6:111,483,698...111,507,782
Ensembl chr 6:111,483,703...111,507,782 		JBrowse link
G Wdr5 WD repeat domain 5 involved_in ISO (PMID:26324722) RGD PMID:26324722 NCBI chr 3:6,061,892...6,080,724
Ensembl chr 3:6,061,940...6,080,680 		JBrowse link
G Wdr61 WD repeat domain 61 involved_in ISO
ISS		 (PMID:16024656)
GO_REF:0000024		 RGD
UniProt		 PMID:16024656 GO_REF:0000024 NCBI chr 8:59,296,339...59,313,663
Ensembl chr 8:59,296,346...59,313,574 		JBrowse link
positive regulation of histone H3-K4 trimethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2e lysine methyltransferase 2E involved_in ISO (PMID:23629655) RGD PMID:23629655 NCBI chr 4:8,187,751...8,255,578
Ensembl chr 4:8,187,751...8,255,514 		JBrowse link
G Prdm9 PR/SET domain 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6355794|PMID:24095733)		 UniProt
RGD		 PMID:24095733 GO_REF:0000024 MGI:6355794 NCBI chr 1:57,533,602...57,555,155
Ensembl chr 1:57,533,577...57,555,048 		JBrowse link
positive regulation of histone H3-K79 methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:16024656) RGD PMID:16024656 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165 		JBrowse link
G Wdr61 WD repeat domain 61 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16024656)		 UniProt
RGD		 PMID:16024656 GO_REF:0000024 NCBI chr 8:59,296,339...59,313,663
Ensembl chr 8:59,296,346...59,313,574 		JBrowse link
positive regulation of histone H3-K9 acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1, DNA repair associated involved_in ISO
IEA		 (PMID:20820192)
GO_REF:0000107
(MGI:5009779|PMID:20820192)		 RGD
Ensembl		 PMID:20820192 GO_REF:0000107 MGI:5009779 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:3046385|PMID:15087456) RGD PMID:15087456 MGI:3046385 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681 		JBrowse link
G Kat2b lysine acetyltransferase 2B IMP RGD PMID:20094059 RGD:7364756 NCBI chr 9:4,440,982...4,492,949 JBrowse link
G Nap1l2 nucleosome assembly protein 1-like 2 acts_upstream_of_or_within ISO (MGI:3723398|PMID:17591696) RGD PMID:17591696 MGI:3723398 NCBI chr  X:73,997,274...73,999,677 JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 1:101,151,240...101,156,806
Ensembl chr 1:101,152,734...101,156,805 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:5308479|PMID:22110608) RGD PMID:22110608 MGI:5308479 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO		 GO_REF:0000107
(MGI:3769957|PMID:16330325)		 Ensembl
RGD		 PMID:16330325 GO_REF:0000107 MGI:3769957 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931 		JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277 		JBrowse link
positive regulation of histone H3-K9 dimethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrtc2 DMRT-like family C2 acts_upstream_of_or_within ISO MGI:3711104 (MGI:3710435|PMID:17447844) RGD PMID:17447844 MGI:3710435 NCBI chr 1:81,734,256...81,741,419
Ensembl chr 1:81,736,335...81,741,345
Ensembl chr 9:81,736,335...81,741,345 		JBrowse link
G Prdm12 PR/SET domain 12 involved_in ISO
IBA		 (PMID:26005867)
PMID:21873635		 RGD PMID:26005867, PMID:21873635 RGD:13792537 NCBI chr 3:10,181,104...10,199,185
Ensembl chr 3:10,181,924...10,196,626 		JBrowse link
positive regulation of histone H3-K9 methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1, DNA repair associated involved_in IEA
ISO		 GO_REF:0000107
(MGI:5009779|PMID:20820192)		 Ensembl
RGD		 PMID:20820192 GO_REF:0000107 MGI:5009779 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681 		JBrowse link
G Gfi1b growth factor independent 1B transcriptional repressor involved_in ISO (MGI:5284774|PMID:17707228) RGD PMID:17707228 MGI:5284774 NCBI chr 3:7,190,721...7,203,444
Ensembl chr 3:7,190,722...7,203,420 		JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in ISO (PMID:22956909) RGD PMID:22956909 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981 		JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 involved_in ISO (MGI:4441247|PMID:19010785) RGD PMID:19010785 MGI:4441247 NCBI chr17:20,183,440...20,365,219
Ensembl chr17:20,184,245...20,364,714 		JBrowse link
G Myb MYB proto-oncogene, transcription factor involved_in ISO (PMID:20484083) RGD PMID:20484083 NCBI chr 1:16,658,178...16,690,135
Ensembl chr 1:16,659,442...16,687,817 		JBrowse link
G Prdm12 PR/SET domain 12 acts_upstream_of_or_within ISO (MGI:5774920|PMID:26005867)
(PMID:26005867)		 RGD PMID:26005867 MGI:5774920 NCBI chr 3:10,181,104...10,199,185
Ensembl chr 3:10,181,924...10,196,626 		JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in ISO (MGI:5584328|PMID:24735877) RGD PMID:24735877 MGI:5584328 NCBI chr 3:37,599,540...37,648,818
Ensembl chr 3:37,599,728...37,647,631 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA		 (PMID:22956909)
GO_REF:0000107		 RGD
Ensembl		 PMID:22956909 GO_REF:0000107 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199 		JBrowse link
positive regulation of histone H3-K9 trimethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrtc2 DMRT-like family C2 acts_upstream_of_or_within ISO MGI:3711104 (MGI:3710435|PMID:17447844) RGD PMID:17447844 MGI:3710435 NCBI chr 1:81,734,256...81,741,419
Ensembl chr 1:81,736,335...81,741,345
Ensembl chr 9:81,736,335...81,741,345 		JBrowse link
G Lmna lamin A/C involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:5913114|PMID:23695662)		 Ensembl
RGD		 PMID:23695662 GO_REF:0000107 MGI:5913114 NCBI chr 2:187,842,884...187,863,552
Ensembl chr 2:187,842,885...187,863,516 		JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5811980|PMID:25722434)		 Ensembl
RGD		 PMID:25722434 GO_REF:0000107 MGI:5811980 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233 		JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 acts_upstream_of_or_within ISO MGI:2445449 (MGI:5913114|PMID:23695662) RGD PMID:23695662 MGI:5913114 NCBI chr  X:146,532,002...146,533,538 JBrowse link
positive regulation of histone H4 acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin, beta 1 involved_in ISO (PMID:16325578) RGD PMID:16325578 NCBI chr 1:164,502,099...164,573,947
Ensembl chr 1:164,502,389...164,593,139 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISO
IEA		 (PMID:21856198)
GO_REF:0000107		 RGD
Ensembl		 PMID:21856198 GO_REF:0000107 NCBI chr10:83,095,067...83,128,342
Ensembl chr10:83,095,068...83,128,297 		JBrowse link
G Muc1 mucin 1, cell surface associated involved_in ISO (PMID:15710329) RGD PMID:15710329 NCBI chr 2:188,543,137...188,547,874
Ensembl chr 2:188,543,137...188,547,874 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 1:101,151,240...101,156,806
Ensembl chr 1:101,152,734...101,156,805 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931 		JBrowse link
positive regulation of histone H4-K16 acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Auts2 activator of transcription and developmental regulator AUTS2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25519132)
GO_REF:0000107		 RGD
Ensembl		 PMID:25519132 GO_REF:0000107 NCBI chr12:27,155,362...28,252,752
Ensembl chr12:28,212,333...28,251,816 		JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in ISO
IEA		 (PMID:20820192)
GO_REF:0000107
(MGI:5009779|PMID:20820192)		 RGD
Ensembl		 PMID:20820192 GO_REF:0000107 MGI:5009779 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681 		JBrowse link
positive regulation of histone H4-K20 methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1, DNA repair associated involved_in IEA
ISO		 GO_REF:0000107
(MGI:5009779|PMID:20820192)
(PMID:20820192)		 Ensembl
RGD		 PMID:20820192 GO_REF:0000107 MGI:5009779 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681 		JBrowse link
positive regulation of histone methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chtop chromatin target of PRMT1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25284789)		 UniProt
RGD		 PMID:25284789 GO_REF:0000024 NCBI chr 2:189,887,850...189,900,079
Ensembl chr 2:189,887,857...189,899,325 		JBrowse link
G Fam47e family with sequence similarity 47, member E involved_in ISO (PMID:33376131) RGD PMID:33376131 NCBI chr14:16,991,496...17,027,563 JBrowse link
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 acts_upstream_of_or_within ISO MGI:5810650 (MGI:5700289|PMID:22770845) RGD PMID:22770845 MGI:5700289 NCBI chr 7:122,896,860...122,918,025
Ensembl chr 7:122,896,871...122,918,036 		JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:3608952 (MGI:3607663|PMID:16195383) RGD PMID:16195383 MGI:3607663 NCBI chr 1:221,704,394...221,710,343
Ensembl chr 1:221,704,493...221,710,331 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:22046413) RGD PMID:22046413 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO MGI:1914617 (MGI:5447149|PMID:22862948) RGD PMID:22862948 MGI:5447149 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426 		JBrowse link
G Paxbp1 PAX3 and PAX7 binding protein 1 acts_upstream_of_or_within ISO MGI:97491 (MGI:5447149|PMID:22862948) RGD PMID:22862948 MGI:5447149 NCBI chr11:31,184,456...31,213,891
Ensembl chr11:31,185,473...31,213,787 		JBrowse link
G Rnf20 ring finger protein 20 acts_upstream_of_or_within ISO (MGI:5319125|PMID:22252316) RGD PMID:22252316 MGI:5319125 NCBI chr 5:64,892,996...64,920,397
Ensembl chr 5:64,892,802...64,920,390 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in ISO (PMID:25284789) RGD PMID:25284789 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427 		JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO (PMID:25280941) RGD PMID:25280941 NCBI chr14:85,753,736...85,758,820
Ensembl chr14:85,753,760...85,758,145 		JBrowse link
positive regulation of histone phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase IMP RGD PMID:19557000 RGD:2316101 NCBI chr 8:58,015,938...58,119,973
Ensembl chr 8:58,015,940...58,120,045 		JBrowse link
G Ccnb1 cyclin B1 involved_in IMP
ISO		 histone H1
(PMID:12954723)		 RGD PMID:12954723, PMID:15291744 RGD:1578405 NCBI chr 2:30,782,133...30,791,106
Ensembl chr 2:30,783,915...30,791,221 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in ISO (PMID:19575011)
(MGI:5616315|PMID:19575011)		 RGD PMID:19575011 MGI:5616315 NCBI chr 3:11,742,269...11,747,117
Ensembl chr 3:11,742,266...11,747,113 		JBrowse link
G Daxx death-domain associated protein IMP RGD PMID:21572393 RGD:9587767 NCBI chr20:5,480,103...5,485,962
Ensembl chr20:5,480,103...5,485,926 		JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO
ISS
IEA		 (PMID:24813610)
(MGI:5602914|PMID:24813610)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:24813610 GO_REF:0000024 GO_REF:0000107 MGI:5602914 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 involved_in ISO (PMID:20018936) RGD PMID:20018936 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975 		JBrowse link
G Rps6ka4 ribosomal protein S6 kinase A4 involved_in ISO (PMID:20018936) RGD PMID:20018936 NCBI chr 1:222,087,328...222,098,284
Ensembl chr 1:222,087,326...222,098,297 		JBrowse link
G Rps6ka5 ribosomal protein S6 kinase A5 involved_in ISO (PMID:20018936) RGD PMID:20018936 NCBI chr 6:124,557,892...124,735,787
Ensembl chr 6:124,557,913...124,735,778 		JBrowse link
G Slk STE20-like kinase IMP RGD PMID:21572393 RGD:9587767 NCBI chr 1:267,359,761...267,415,735
Ensembl chr 1:267,359,830...267,412,810 		JBrowse link
positive regulation of histone ubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine demethylase 1A acts_upstream_of_or_within ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171 		JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (MGI:5615026|PMID:25463925) RGD PMID:25463925 MGI:5615026 NCBI chr 1:219,566,130...219,642,294
Ensembl chr 1:219,566,156...219,640,294 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    cellular process 18344
      regulation of cellular process 12273
        regulation of cellular component organization 2591
          regulation of chromatin organization 226
            regulation of histone modification 181
              positive regulation of histone modification 111
                positive regulation of histone acetylation + 33
                positive regulation of histone deacetylation + 23
                positive regulation of histone demethylase activity (H3-K4 specific) 0
                positive regulation of histone deubiquitination 1
                positive regulation of histone methylation + 49
                positive regulation of histone phosphorylation 9
                positive regulation of histone ubiquitination + 6
Path 2
Term Annotations click to browse term
  biological_process 19491
    cellular process 18344
      cellular component organization or biogenesis 6721
        cellular component organization 6481
          organelle organization 4060
            chromosome organization 1222
              chromatin organization 808
                covalent chromatin modification 517
                  histone modification 502
                    regulation of histone modification 181
                      positive regulation of histone modification 111
                        positive regulation of histone acetylation + 33
                        positive regulation of histone deacetylation + 23
                        positive regulation of histone demethylase activity (H3-K4 specific) 0
                        positive regulation of histone deubiquitination 1
                        positive regulation of histone methylation + 49
                        positive regulation of histone phosphorylation 9
                        positive regulation of histone ubiquitination + 6
paths to the root