programmed DNA elimination - Ontology Report

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner VCMap Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS	{{ watchLinkText }}

Term:	programmed DNA elimination	go back to main search page
Accession:	GO:0031049	browse the term
Definition:	The DNA metabolic process in which micronuclear-limited sequences, internal eliminated sequences (IES) and breakage eliminated sequences (BES) are removed from the developing macronucleus (anlage) of a ciliate.

show annotations for term's descendants Sort by:

Rat (2) Mouse (2) Human (2) Chinchilla (2) Bonobo (2) Dog (2) Squirrel (2) Pig (2) All
Genes (2)

chromosome breakage

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Hmga2

high mobility group AT-hook 2

involved_in

(PMID:19549901)
GO_REF:0000024

GO_REF:0000024

NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408

ring finger and WD repeat domain 3

involved_in

(MGI:5917601|PMID:28691929)

NCBI chr19:43,477,121...43,499,068
Ensembl chr19:42,964,586...42,972,101

Term paths to the root

Path 1
Term	Annotations
biological_process	19491
cellular process	18343
cellular metabolic process	10755
cellular macromolecule metabolic process	8243
DNA metabolic process	882
programmed DNA elimination	2
chromosome breakage	2
scnRNA processing	0
Path 2
Term	Annotations
biological_process	19491
metabolic process	11797
cellular metabolic process	10755
cellular nitrogen compound metabolic process	6601
nucleobase-containing compound metabolic process	5420
nucleic acid metabolic process	4930
DNA metabolic process	882
programmed DNA elimination	2
chromosome breakage	2
scnRNA processing	0

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message