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ONTOLOGY REPORT - ANNOTATIONS


Term:heterochromatin assembly by small RNA
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Accession:GO:0031048 term browser browse the term
Definition:Assembly of heterochromatin, directed by small RNAs sharing sequence identity to the repressed region.
Synonyms:exact_synonym: RNA interference-like chromatin silencing;   RNA-mediated chromatin silencing;   RNA-mediated transcriptional silencing;   RNAi-directed chromatin silencing;   RNAi-like chromatin silencing;   small RNA-mediated heterochromatic silencing
 broad_synonym: RNA-mediated TGS
 related_synonym: chromatin silencing by small RNA;   heterochromatin assembly involved in chromatin silencing by small RNA;   heterochromatin formation involved in chromatin silencing by small RNA;   small RNA-mediated heterochromatin formation
 alt_id: GO:0070924
 never_in_taxon: NCBITaxon:4930 ! Saccharomyces



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heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam172a family with sequence similarity 172, member A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:7,553,873...8,018,183
Ensembl chr 2:7,553,891...8,018,162
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:119,405,103...119,446,861
Ensembl chr 6:119,404,334...119,448,915
JBrowse link
G Znfx1 zinc finger, NFX1-type containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:155,764,073...155,791,777
Ensembl chr 3:155,764,980...155,821,242
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in ISO
IBA
(PMID:18772885)
PMID:21873635
RGD PMID:18772885 PMID:21873635 RGD:13792537 NCBI chr10:47,214,479...47,228,552
Ensembl chr10:47,214,490...47,228,761
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589287 (MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:3528782 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G H3f3a H3.3 histone A acts_upstream_of_or_within ISO MGI:1101768 (MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:5694896 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:1097686 (MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:5694896 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G Hells helicase, lymphoid specific involved_in IBA
ISO
PMID:21873635
(MGI:3041983|PMID:14612388)
RGD PMID:14612388 PMID:21873635 MGI:3041983, RGD:13792537 NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    negative regulation of biological process 5677
      negative regulation of metabolic process 3218
        negative regulation of macromolecule metabolic process 2990
          negative regulation of gene expression 1145
            negative regulation of gene expression, epigenetic 118
              heterochromatin assembly 112
                heterochromatin assembly by small RNA 8
                  conversion of ds siRNA to ss siRNA involved in gene silencing by small RNA 0
                  negative regulation of heterochromatin assembly by small RNA 0
                  production of siRNA involved in gene silencing by small RNA 0
                  regulation of heterochromatin assembly by small RNA + 0
                  siRNA loading onto RISC involved in gene silencing by small RNA 0
                  siRNA-dependent facultative heterochromatin assembly + 0
Path 2
Term Annotations click to browse term
  biological_process 19497
    cellular process 18359
      cellular component organization or biogenesis 6620
        cellular component organization 6378
          organelle organization 3888
            chromosome organization 964
              chromatin organization 530
                chromatin assembly or disassembly 244
                  chromatin assembly 226
                    heterochromatin assembly 112
                      heterochromatin assembly by small RNA 8
                        conversion of ds siRNA to ss siRNA involved in gene silencing by small RNA 0
                        negative regulation of heterochromatin assembly by small RNA 0
                        production of siRNA involved in gene silencing by small RNA 0
                        regulation of heterochromatin assembly by small RNA + 0
                        siRNA loading onto RISC involved in gene silencing by small RNA 0
                        siRNA-dependent facultative heterochromatin assembly + 0
paths to the root