Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:retromer complex
go back to main search page
Accession:GO:0030904 term browser browse the term
Definition:A conserved hetero-pentameric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. The budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p. The mammalian complex shows slight variation in composition compared to yeast, and comprises SNX1 or SNX2, SNX5 or SNX6, VPS26A or VPS26B, VPS29, and VPS35.



show annotations for term's descendants           Sort by:
 
retromer complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankfy1 ankyrin repeat and FYVE domain containing 1 colocalizes_with
part_of
ISO
IEA
(PMID:22284051)
GO_REF:0000107
RGD
Ensembl
PMID:22284051 GO_REF:0000107 NCBI chr10:57,312,246...57,383,964
Ensembl chr10:57,312,246...57,383,964
JBrowse link
G Dctn1 dynactin subunit 1 colocalizes_with ISO (PMID:19619496) RGD PMID:19619496 NCBI chr 4:115,671,024...115,703,824
Ensembl chr 4:115,661,638...115,703,815
JBrowse link
G Dennd4c DENN domain containing 4C part_of ISO (MGI:5427278|PMID:22472443) RGD PMID:22472443 MGI:5427278 NCBI chr 5:101,272,298...101,369,529
Ensembl chr 5:101,272,005...101,368,118
JBrowse link
G Dennd5a DENN domain containing 5A colocalizes_with
part_of
ISO
IEA
(PMID:19619496)
GO_REF:0000107
RGD
Ensembl
PMID:19619496 GO_REF:0000107 NCBI chr 1:163,928,183...163,994,207
Ensembl chr 1:163,928,183...163,994,316
JBrowse link
G Entr1 endosome associated trafficking regulator 1 colocalizes_with
part_of
ISO
IEA
(PMID:25278552)
GO_REF:0000107
RGD
Ensembl
PMID:25278552 GO_REF:0000107 NCBI chr 3:9,200,967...9,207,688
Ensembl chr 3:9,200,967...9,207,688
JBrowse link
G Magel2 MAGE family member L2 colocalizes_with
part_of
ISO
IEA
(PMID:23452853)
GO_REF:0000107
RGD
Ensembl
PMID:23452853 GO_REF:0000107 NCBI chr 1:115,880,137...115,884,680
Ensembl chr 1:115,880,474...115,884,250
JBrowse link
G Rab7a RAB7A, member RAS oncogene family colocalizes_with ISO (PMID:19531583), (PMID:24344282) RGD PMID:19531583 PMID:24344282 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Snx1 sorting nexin 1 part_of ISO (PMID:19619496) RGD PMID:19619496 NCBI chr 8:66,630,086...66,670,418
Ensembl chr 8:66,630,086...66,670,360
JBrowse link
G Snx12 sorting nexin 12 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:66,226,995...66,356,945
Ensembl chr  X:66,227,053...66,356,950
JBrowse link
G Snx2 sorting nexin 2 part_of ISO (PMID:11102511), (PMID:19619496) RGD PMID:11102511 PMID:19619496 NCBI chr18:46,602,223...46,643,870
Ensembl chr18:46,602,284...46,643,865
JBrowse link
G Snx27 sorting nexin 27 colocalizes_with
part_of
ISO
IEA
ISS
(PMID:23563491)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23563491 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:182,135,904...182,218,906
Ensembl chr 2:182,135,905...182,218,906
JBrowse link
G Snx3 sorting nexin 3 colocalizes_with
part_of
ISO
IBA
(PMID:21725319), (PMID:24344282)
PMID:21873635
RGD PMID:21725319 PMID:24344282 PMID:21873635 RGD:13792537 NCBI chr20:45,992,446...46,025,361
Ensembl chr20:45,992,720...46,025,379
JBrowse link
G Snx5 sorting nexin 5 part_of ISO
ISS
(PMID:19619496)
GO_REF:0000024
RGD
UniProt
PMID:19619496 GO_REF:0000024 NCBI chr 3:131,621,709...131,641,205
Ensembl chr 3:131,621,880...131,641,192
JBrowse link
G Snx6 sorting nexin 6 part_of ISO (PMID:19619496) RGD PMID:19619496 NCBI chr 6:72,230,950...72,274,157
Ensembl chr 6:72,229,870...72,315,911
JBrowse link
G Snx8 sorting nexin 8 colocalizes_with
part_of
ISO
IEA
(PMID:19782049)
GO_REF:0000107
RGD
Ensembl
PMID:19782049 GO_REF:0000107 NCBI chr12:14,251,829...14,300,435
Ensembl chr12:14,251,859...14,300,432
JBrowse link
G Tbc1d5 TBC1 domain family, member 5 part_of ISO (PMID:20923837) RGD PMID:20923837 NCBI chr 9:3,503,328...4,017,131
Ensembl chr 9:3,513,623...4,016,913
JBrowse link
G Trim27 tripartite motif-containing 27 colocalizes_with
part_of
ISO
IEA
(PMID:23452853)
GO_REF:0000107
RGD
Ensembl
PMID:23452853 GO_REF:0000107 NCBI chr17:43,538,282...43,550,633
Ensembl chr17:43,538,285...43,550,643
JBrowse link
G Vps26a VPS26 retromer complex component A part_of ISO
IBA
IDA
(PMID:11102511), (PMID:28892079)
(MGI:4867115|PMID:21040701)
PMID:21873635
RGD PMID:11102511 PMID:21040701 PMID:28892079 PMID:21873635 PMID:11102511 MGI:4867115, RGD:13792537, RGD:10412293 NCBI chr20:30,404,320...30,434,266
Ensembl chr20:30,404,325...30,434,131
JBrowse link
G Vps26b VPS26 retromer complex component B part_of IBA
ISO
PMID:21873635
(MGI:4867115|PMID:21040701)
RGD PMID:21040701 PMID:21873635 MGI:4867115, RGD:13792537 NCBI chr 8:25,415,877...25,436,985
Ensembl chr 8:25,415,261...25,436,985
JBrowse link
G Vps29 VPS29 retromer complex component part_of IBA
ISO
ISS
PMID:21873635
(MGI:4867115|PMID:21040701)
GO_REF:0000024
(PMID:11102511), (PMID:28892079)
RGD
UniProt
PMID:11102511 PMID:21040701 PMID:28892079 PMID:21873635 GO_REF:0000024 MGI:4867115, RGD:13792537 NCBI chr12:34,208,911...34,217,977
Ensembl chr12:34,207,263...34,217,964
JBrowse link
G Vps35 VPS35 retromer complex component part_of IDA
ISO
IBA
PMID:11102511
(MGI:4867115|PMID:21040701)
PMID:21873635
(PMID:11102511), (PMID:28892079)
RGD PMID:11102511 PMID:21040701 PMID:28892079 PMID:11102511 PMID:21873635 MGI:4867115, RGD:10412293, RGD:13792537 NCBI chr19:21,765,771...21,801,620
Ensembl chr19:21,765,749...21,801,618
JBrowse link
retromer, cargo-selective complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps26a VPS26 retromer complex component A part_of ISO (PMID:27385586) RGD PMID:27385586 NCBI chr20:30,404,320...30,434,266
Ensembl chr20:30,404,325...30,434,131
JBrowse link
G Vps29 VPS29 retromer complex component part_of ISO
IEA
(PMID:27385586)
GO_REF:0000107
RGD
Ensembl
PMID:27385586 GO_REF:0000107 NCBI chr12:34,208,911...34,217,977
Ensembl chr12:34,207,263...34,217,964
JBrowse link
G Vps35 VPS35 retromer complex component part_of ISO (PMID:20164305), (PMID:27385586) RGD PMID:20164305 PMID:27385586 NCBI chr19:21,765,771...21,801,620
Ensembl chr19:21,765,749...21,801,618
JBrowse link
retromer, tubulation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snx1 sorting nexin 1 part_of ISO UniProtKB:O60749 (PMID:11102511) RGD PMID:11102511 NCBI chr 8:66,630,086...66,670,418
Ensembl chr 8:66,630,086...66,670,360
JBrowse link
G Snx2 sorting nexin 2 part_of ISO UniProtKB:Q13596 (PMID:11102511) RGD PMID:11102511 NCBI chr18:46,602,223...46,643,870
Ensembl chr18:46,602,284...46,643,865
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19896
    cellular anatomical entity 19599
      endomembrane system 4004
        retromer complex 21
          retromer, cargo-selective complex 3
          retromer, tubulation complex 2
Path 2
Term Annotations click to browse term
  cellular_component 19896
    cellular anatomical entity 19599
      membrane 9895
        membrane protein complex 1234
          retromer complex 21
            retromer, cargo-selective complex 3
            retromer, tubulation complex 2
paths to the root