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ONTOLOGY REPORT - ANNOTATIONS

Term:notochord development
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Accession:GO:0030903 term browser browse the term
Definition:The process whose specific outcome is the progression of the notochord over time, from its formation to the mature structure. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column.


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notochord development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein involved_in ISO (MGI:76306|PMID:7586755) BHF-UCL PMID:7586755 MGI:76306 NCBI chr 9:136,850,521...137,055,249 JBrowse link
G COL18A1 collagen type XVIII alpha 1 chain involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:207,907,835...207,984,082
Ensembl chr13:207,940,948...207,982,938 		JBrowse link
G COL27A1 collagen type XXVII alpha 1 chain involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:254,768,576...254,924,893
Ensembl chr 1:254,770,093...254,923,823 		JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718 		JBrowse link
G COL5A2 collagen type V alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:93,611,856...93,981,131
Ensembl chr15:93,611,856...93,800,191 		JBrowse link
G GDF3 growth differentiation factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16368929) Ensembl
MGI		 PMID:16368929 GO_REF:0000107 NCBI chr 5:62,835,926...62,841,827
Ensembl chr 5:62,835,880...62,841,884 		JBrowse link
G ID3 inhibitor of DNA binding 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:81,422,541...81,424,169
Ensembl chr 6:81,422,546...81,424,075 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,142...88,528,326 		JBrowse link
G SMYD5 SMYD family member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15231714), (PMID:17884984)
(PMID:20197654)
(PMID:13837681), (PMID:15550757), (PMID:8155581)		 Ensembl
MGI		 PMID:8155581 PMID:13837681 PMID:15231714 PMID:15550757 PMID:17884984 More... GO_REF:0000107 NCBI chr 3:69,566,112...69,571,165
Ensembl chr 3:69,567,449...69,571,100 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chr 6:164,197,511...164,266,615
Ensembl chr 6:164,197,600...164,265,818 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8155581)
(PMID:8293872)
(PMID:15384171)		 Ensembl
MGI		 PMID:8155581 PMID:8293872 PMID:15384171 GO_REF:0000107 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,725,601 		JBrowse link
G TEAD1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chr 2:46,396,490...46,670,619
Ensembl chr 2:46,400,066...46,670,472 		JBrowse link
G TEAD2 TEA domain transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18332127) Ensembl
MGI		 PMID:18332127 GO_REF:0000107 NCBI chr 6:54,448,183...54,462,325
Ensembl chr 6:54,448,191...54,462,210 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18332127) Ensembl
MGI		 PMID:18332127 GO_REF:0000107 NCBI chr 9:32,811,629...32,924,926
Ensembl chr 9:32,811,416...32,925,603 		JBrowse link
notochord cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11287184) Ensembl
MGI		 PMID:11287184 GO_REF:0000107 NCBI chr 6:75,251,465...75,279,364
Ensembl chr 6:75,251,467...75,279,314 		JBrowse link
notochord formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRB2 crumbs cell polarity complex component 2 involved_in ISS
IEA		 CAFA
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:264,277,549...264,301,731
Ensembl chr 1:264,276,987...264,301,713 		JBrowse link
G EFNA1 ephrin A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11287184) Ensembl
MGI		 PMID:11287184 GO_REF:0000107 NCBI chr 4:94,666,457...94,673,442
Ensembl chr 4:94,666,460...94,674,071 		JBrowse link
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11287184) Ensembl
MGI		 PMID:11287184 GO_REF:0000107 NCBI chr 6:75,251,465...75,279,364
Ensembl chr 6:75,251,467...75,279,314 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7589801) Ensembl
MGI		 PMID:7589801 GO_REF:0000107 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,725,601 		JBrowse link
notochord morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11287184) Ensembl
MGI		 PMID:11287184 GO_REF:0000107 NCBI chr 6:75,251,465...75,279,364
Ensembl chr 6:75,251,467...75,279,314 		JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22949634) Ensembl
MGI		 PMID:22949634 GO_REF:0000107 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,814...40,154,029 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,142...88,528,326 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16916379) Ensembl
MGI		 PMID:16916379 GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206 		JBrowse link
G PPP1R35 protein phosphatase 1 regulatory subunit 35 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,363,005...8,378,351
Ensembl chr 3:8,363,009...8,364,347 		JBrowse link
G WNT11 Wnt family member 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25813538) Ensembl
MGI		 PMID:25813538 GO_REF:0000107 NCBI chr 9:10,413,182...10,435,158
Ensembl chr 9:10,413,263...10,435,100 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25813538) Ensembl
MGI		 PMID:25813538 GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207 		JBrowse link
notochord regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI1 GLI family zinc finger 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10725236) Ensembl
MGI		 PMID:10725236 GO_REF:0000107 NCBI chr 5:22,736,325...22,747,421
Ensembl chr 5:22,739,900...22,747,421 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10725236) Ensembl
MGI		 PMID:10725236 GO_REF:0000107 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17813
    multicellular organismal process 8689
      multicellular organism development 5107
        embryo development 1329
          embryonic organ development 545
            notochord development 25
              notochord cell differentiation + 1
              notochord morphogenesis + 12
Path 2
Term Annotations click to browse term
  biological_process 17813
    developmental process 6722
      anatomical structure development 6316
        multicellular organism development 5107
          embryo development 1329
            embryonic organ development 545
              notochord development 25
                notochord cell differentiation + 1
                notochord morphogenesis + 12
paths to the root