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ONTOLOGY REPORT - ANNOTATIONS


Term:cortical cytoskeleton organization
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Accession:GO:0030865 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane.
Synonyms:exact_synonym: cortical cytoskeleton organisation
 related_synonym: cortical cytoskeleton organization and biogenesis


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cortical cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 4930544G11Rik RIKEN cDNA 4930544G11 gene involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:65,952,571...65,954,014
Ensembl chr 6:65,952,609...65,954,014
JBrowse link
G Actn1 actinin, alpha 1 involved_in TAS (MGI:3577135|PMID:15841212) UniProt PMID:15841212 MGI:3577135 NCBI chr12:80,167,542...80,260,420
Ensembl chr12:80,167,547...80,260,371
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1 like 3 involved_in TAS (MGI:5296417|PMID:21966409) BHF-UCL PMID:21966409 MGI:5296417 NCBI chr17:69,075,647...69,289,991
Ensembl chr17:69,075,683...69,289,989
JBrowse link
G Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:55,280,809...55,303,239
Ensembl chr12:55,278,991...55,302,998
JBrowse link
G Rac1 Rac family small GTPase 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:143,505,481...143,528,031
Ensembl chr 5:143,503,634...143,528,036
JBrowse link
G Rac2 Rac family small GTPase 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:78,559,169...78,572,783
Ensembl chr15:78,559,167...78,572,783
JBrowse link
G Rac3 Rac family small GTPase 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:120,721,468...120,723,969
Ensembl chr11:120,721,470...120,723,969
JBrowse link
G Rhoa ras homolog family member A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:108,306,160...108,337,943
Ensembl chr 9:108,306,129...108,337,934
JBrowse link
G Rhob ras homolog family member B involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:8,497,661...8,500,009
Ensembl chr12:8,497,661...8,500,009
JBrowse link
G Rhobtb1 Rho-related BTB domain containing 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:69,151,058...69,291,791
Ensembl chr10:69,151,434...69,291,791
JBrowse link
G Rhobtb2 Rho-related BTB domain containing 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:69,784,990...69,824,847
Ensembl chr14:69,784,990...69,805,636
JBrowse link
G Rhobtb3 Rho-related BTB domain containing 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:75,869,537...75,943,824
Ensembl chr13:75,869,537...75,943,925
JBrowse link
G Rhoc ras homolog family member C involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:104,789,034...104,794,459
Ensembl chr 3:104,788,375...104,794,459
JBrowse link
G Rhod ras homolog family member D involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:4,423,472...4,439,534
Ensembl chr19:4,425,459...4,439,432
JBrowse link
G Rhof ras homolog family member F (in filopodia) involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:123,118,180...123,141,808
Ensembl chr 5:123,103,044...123,132,692
JBrowse link
G Rhog ras homolog family member G involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:102,239,123...102,250,118
Ensembl chr 7:102,239,123...102,256,054
JBrowse link
G Rhoh ras homolog family member H involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:65,860,742...65,896,700
Ensembl chr 5:65,861,213...65,896,700
JBrowse link
G Rnd1 Rho family GTPase 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:98,669,205...98,677,461
Ensembl chr15:98,663,421...98,677,461
JBrowse link
G Rnd2 Rho family GTPase 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:101,468,175...101,471,853
Ensembl chr11:101,464,999...101,471,853
JBrowse link
G Rnd3 Rho family GTPase 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:51,130,439...51,149,111
Ensembl chr 2:51,130,438...51,149,111
JBrowse link
G Septin7 septin 7 acts_upstream_of_or_within IMP (MGI:5306816|PMID:22232702) MGI PMID:22232702 MGI:5306816 NCBI chr 9:25,251,991...25,308,571
Ensembl chr 9:25,252,439...25,308,571
JBrowse link
G Synpo synaptopodin involved_in NAS (MGI:3577135|PMID:15841212) UniProt PMID:15841212 MGI:3577135 NCBI chr18:60,593,981...60,660,173
Ensembl chr18:60,593,973...60,660,142
JBrowse link
G Wdr1 WD repeat domain 1 involved_in IMP (MGI:3784948|PMID:17515402) UniProt PMID:17515402 MGI:3784948 NCBI chr 5:38,526,806...38,562,922
Ensembl chr 5:38,526,813...38,563,221
JBrowse link
actin cortical patch assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1c coronin, actin binding protein 1C acts_upstream_of_or_within TAS (MGI:1342784|PMID:10461187) MGI PMID:10461187 MGI:1342784 NCBI chr 5:113,842,439...113,908,706
Ensembl chr 5:113,842,436...113,908,758
JBrowse link
actomyosin contractile ring assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anln anillin, actin binding protein involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:22,331,214...22,389,211
Ensembl chr 9:22,332,012...22,389,188
JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein involved_in IMP (MGI:5819325|PMID:27336173) UniProt PMID:27336173 MGI:5819325 NCBI chr 9:113,651,744...113,708,279
Ensembl chr 9:113,651,744...113,708,259
JBrowse link
G Racgap1 Rac GTPase-activating protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:99,620,496...99,651,656
Ensembl chr15:99,620,496...99,651,656
JBrowse link
G Rtkn rhotekin involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:83,135,505...83,152,579
Ensembl chr 6:83,135,463...83,152,579
JBrowse link
actomyosin contractile ring assembly actin filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plec plectin involved_in IMP (MGI:5790023|PMID:26519478) MGI PMID:26519478 MGI:5790023 NCBI chr15:76,170,974...76,231,378
Ensembl chr15:76,170,974...76,232,574
JBrowse link
cortical actin cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap11 A kinase (PRKA) anchor protein 11 acts_upstream_of_or_within IMP (MGI:5792167|PMID:27402760) MGI PMID:27402760 MGI:5792167 NCBI chr14:78,492,246...78,536,980
Ensembl chr14:78,492,246...78,536,808
JBrowse link
G Arf6 ADP-ribosylation factor 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:69,372,150...69,375,980
Ensembl chr12:69,372,150...69,373,783
JBrowse link
G Calr calreticulin acts_upstream_of_or_within IDA (MGI:3051936|PMID:15136153) MGI PMID:15136153 MGI:3051936 NCBI chr 8:84,842,088...84,846,931
Ensembl chr 8:84,841,850...84,846,934
JBrowse link
G Cavin3 caveolae associated 3 acts_upstream_of_or_within IMP (MGI:5518817|PMID:24069528) MGI PMID:24069528 MGI:5518817 NCBI chr 7:105,480,616...105,482,197
Ensembl chr 7:105,480,083...105,482,300
JBrowse link
G Cdk5 cyclin-dependent kinase 5 involved_in ISO RGD
MGI
PMID:15331630 GO_REF:0000096 MGI:4417868 RGD:1598417 NCBI chr 5:24,407,597...24,423,587
Ensembl chr 5:24,418,241...24,423,530
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:31,663,443...31,873,356
Ensembl chr16:31,663,443...31,875,129
JBrowse link
G Ehd2 EH-domain containing 2 acts_upstream_of_or_within IDA (MGI:3056883|PMID:15247266) MGI PMID:15247266 MGI:3056883 NCBI chr 7:15,946,963...15,967,535
Ensembl chr 7:15,946,958...15,967,567
JBrowse link
G Epb41 erythrocyte membrane protein band 4.1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 4:131,923,413...132,075,346
Ensembl chr 4:131,923,413...132,075,321
JBrowse link
G Epb41l1 erythrocyte membrane protein band 4.1 like 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 2:156,417,595...156,543,214
Ensembl chr 2:156,420,909...156,543,214
JBrowse link
G Epb41l2 erythrocyte membrane protein band 4.1 like 2 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr10:25,359,782...25,523,519
Ensembl chr10:25,359,798...25,523,519
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1 like 3 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr17:69,075,647...69,289,991
Ensembl chr17:69,075,683...69,289,989
JBrowse link
G Fhod1 formin homology 2 domain containing 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:105,329,160...105,348,062
Ensembl chr 8:105,329,163...105,347,953
JBrowse link
G Fhod3 formin homology 2 domain containing 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr18:24,708,388...25,133,507
Ensembl chr18:24,708,623...25,133,501
JBrowse link
G Fmnl1 formin-like 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:103,171,004...103,198,902
Ensembl chr11:103,171,107...103,198,901
JBrowse link
G Fmnl2 formin-like 2 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 2:52,857,717...53,134,202
Ensembl chr 2:52,857,860...53,133,804
JBrowse link
G Fmnl3 formin-like 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:99,317,210...99,370,521
Ensembl chr15:99,317,225...99,370,482
JBrowse link
G Ikbkb inhibitor of kappaB kinase beta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:22,659,205...22,706,589
Ensembl chr 8:22,659,212...22,706,589
JBrowse link
G Llgl1 LLGL1 scribble cell polarity complex component involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:60,699,672...60,714,186
Ensembl chr11:60,699,723...60,714,186
JBrowse link
G Llgl2 LLGL2 scribble cell polarity complex component involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:115,824,029...115,855,780
Ensembl chr11:115,824,049...115,855,780
JBrowse link
G Nckap1 NCK-associated protein 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:80,500,512...80,581,182
Ensembl chr 2:80,500,512...80,581,380
JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IBA
IMP
ISO
(MGI:6201960|PMID:21873635)
(MGI:5502518|PMID:23424621)
GO_Central
UniProt
MGI
PMID:21873635 PMID:23424621 GO_REF:0000096 MGI:4834177 MGI:5502518 MGI:6201960 NCBI chr15:103,453,783...103,502,860
Ensembl chr15:103,453,794...103,498,810
JBrowse link
G Plek pleckstrin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:16,971,206...17,008,718
Ensembl chr11:16,971,206...17,052,381
JBrowse link
G Rab13 RAB13, member RAS oncogene family involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 3:90,213,715...90,226,387
Ensembl chr 3:90,213,695...90,226,385
JBrowse link
G Rhoq ras homolog family member Q involved_in ISO
IMP
IBA
(MGI:2178001|PMID:11821390)
(MGI:6201960|PMID:21873635)
MGI
BHF-UCL
GO_Central
PMID:11821390 PMID:21873635 GO_REF:0000096 MGI:2178001 MGI:4834177 MGI:6201960 NCBI chr17:86,963,111...87,000,069
Ensembl chr17:86,963,082...87,000,069
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr18:10,064,401...10,182,251
Ensembl chr18:10,064,401...10,182,045
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr12:16,894,978...16,988,274
Ensembl chr12:16,894,895...16,987,823
JBrowse link
G Strip1 striatin interacting protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:107,612,532...107,631,710
Ensembl chr 3:107,612,532...107,631,694
JBrowse link
G Tln1 talin 1 acts_upstream_of_or_within IMP (MGI:2667760|PMID:12867986) MGI PMID:12867986 MGI:2667760 NCBI chr 4:43,531,513...43,562,583
Ensembl chr 4:43,531,519...43,562,691
JBrowse link
G Tnf tumor necrosis factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:35,199,367...35,202,007
Ensembl chr17:35,199,381...35,202,007
JBrowse link
cortical microtubule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg1 discs large MAGUK scaffold protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:31,663,443...31,873,356
Ensembl chr16:31,663,443...31,875,129
JBrowse link
G Ezr ezrin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:6,738,131...6,782,780
Ensembl chr17:6,738,041...6,782,784
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 involved_in IMP (MGI:5293247|PMID:21844209) CACAO PMID:21844209 MGI:5293247 NCBI chr11:74,673,949...74,724,384
Ensembl chr11:74,673,949...74,724,670
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 5:114,622,152...114,658,435
Ensembl chr 5:114,622,152...114,658,421
JBrowse link
cytoskeletal matrix organization at active zone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 involved_in IMP
ISO
(MGI:4355770|PMID:19628693) BHF-UCL
MGI
PMID:19628693 GO_REF:0000096 MGI:4355770 MGI:4417868 NCBI chr 3:25,421,808...26,332,866
Ensembl chr 3:25,426,215...26,332,460
JBrowse link
regulation of cytokinesis, actomyosin contractile ring assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ect2 ect2 oncogene involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 3:27,097,222...27,154,253
Ensembl chr 3:27,097,222...27,153,878
JBrowse link
terminal web assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezr ezrin involved_in IGI (MGI:5621262|PMID:22114352) UniProt PMID:22114352 MGI:5621262 NCBI chr17:6,738,131...6,782,780
Ensembl chr17:6,738,041...6,782,784
JBrowse link
G Pls1 plastin 1 (I-isoform) involved_in
acts_upstream_of_or_within
IGI
IMP
(MGI:5621262|PMID:22114352)
(MGI:5609425|PMID:19321664)
UniProt
MGI
PMID:19321664 PMID:22114352 MGI:5609425 MGI:5621262 NCBI chr 9:95,752,642...95,845,306
Ensembl chr 9:95,752,642...95,845,311
JBrowse link
G Vil1 villin 1 involved_in IGI (MGI:5621262|PMID:22114352) UniProt PMID:22114352 MGI:5621262 NCBI chr 1:74,409,384...74,435,560
Ensembl chr 1:74,409,376...74,435,559
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28616
    cellular process 17619
      cellular component organization or biogenesis 6404
        cellular component organization 6209
          organelle organization 3750
            cytoskeleton organization 1434
              cortical cytoskeleton organization 64
                cortical actin cytoskeleton organization + 39
                cortical microtubule organization 4
                cytoskeletal matrix organization at active zone 1
paths to the root