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ONTOLOGY REPORT - ANNOTATIONS

Term:cortical cytoskeleton organization
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Accession:GO:0030865 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane.
Synonyms:exact_synonym: cortical cytoskeleton organisation
 related_synonym: cortical cytoskeleton organization and biogenesis

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cortical cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3C protein phosphatase 2 regulatory subunit B''gamma involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:11,901,522...11,935,764
Ensembl chr24:11,900,604...11,935,560 		JBrowse link
G PTK2B protein tyrosine kinase 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:25,437,680...25,571,594
Ensembl chr 8:25,437,564...25,571,782 		JBrowse link
G SEPTIN7 septin 7 acts_upstream_of_or_within ISO (PMID:22232702) MGI PMID:22232702 NCBI chr21:22,521,109...22,626,464
Ensembl chr21:22,522,127...22,626,504 		JBrowse link
G WDR1 WD repeat domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:39,929,749...39,973,892
Ensembl chr27:39,929,787...39,974,012 		JBrowse link
actomyosin contractile ring assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANLN anillin, actin binding protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:22,034,213...22,099,207
Ensembl chr21:22,034,259...22,099,158 		JBrowse link
G PDCD6IP programmed cell death 6 interacting protein involved_in ISO (PMID:27336173) UniProt PMID:27336173 NCBI chr15:78,265,099...78,339,307
Ensembl chr15:78,265,252...78,339,873 		JBrowse link
G RACGAP1 Rac GTPase activating protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:46,218,987...46,260,477
Ensembl chr11:46,220,090...46,254,602 		JBrowse link
G RTKN rhotekin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:32,835,660...32,851,799
Ensembl chr14:32,837,546...32,855,912 		JBrowse link
actomyosin contractile ring assembly actin filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLEC plectin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:138,125,471...138,187,209
Ensembl chr 8:138,125,280...138,149,364 		JBrowse link
cortical actin cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP11 A-kinase anchoring protein 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:20,447,394...20,498,604
Ensembl chr 3:20,462,176...20,494,670 		JBrowse link
G ARF6 ARF GTPase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:26,948,794...26,952,803
Ensembl chr24:26,949,388...26,950,074 		JBrowse link
G CALR calreticulin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:11,618,691...11,624,299
Ensembl chr 6:11,618,396...11,623,792 		JBrowse link
G CAVIN3 caveolae associated protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:58,504,726...58,507,200
Ensembl chr 1:58,504,782...58,507,438 		JBrowse link
G CDK5 cyclin dependent kinase 5 ISO RGD PMID:15331630 RGD:1598417 NCBI chr21:119,235,687...119,240,163 JBrowse link
G DLG1 discs large MAGUK scaffold protein 1 involved_in ISO (PMID:14699157) UniProt PMID:14699157 NCBI chr15:89,937,900...90,214,976
Ensembl chr15:90,055,964...90,215,652 		JBrowse link
G EHD2 EH domain containing 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:41,034,263...41,054,340
Ensembl chr 6:41,034,274...41,056,401 		JBrowse link
G EPB41 erythrocyte membrane protein band 4.1 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:103,704,322...103,928,004
Ensembl chr20:103,699,694...103,927,730 		JBrowse link
G EPB41L1 erythrocyte membrane protein band 4.1 like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:56,947,777...57,085,856
Ensembl chr 2:56,966,950...57,086,448 		JBrowse link
G EPB41L3 erythrocyte membrane protein band 4.1 like 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr18:64,489,194...64,704,733
Ensembl chr18:64,489,042...64,585,973 		JBrowse link
G FHOD1 formin homology 2 domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:60,207,972...60,227,032
Ensembl chr 5:60,208,109...60,229,272 		JBrowse link
G FHOD3 formin homology 2 domain containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:44,053,360...44,540,820
Ensembl chr18:44,049,837...44,540,760 		JBrowse link
G FMN1 formin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:49,700,309...50,117,799
Ensembl chr26:49,734,553...49,996,405 		JBrowse link
G FMN2 formin 2 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr25:77,188,304...77,432,384 JBrowse link
G FMNL1 formin like 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:61,169,453...61,198,686
Ensembl chr16:61,169,018...61,198,535 		JBrowse link
G FMNL2 formin like 2 involved_in ISO (PMID:21834987) UniProt PMID:21834987 NCBI chr10:37,757,033...38,081,750 JBrowse link
G FMNL3 formin like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:45,889,840...45,952,938
Ensembl chr11:45,891,979...45,952,917 		JBrowse link
G KCNC3 potassium voltage-gated channel subfamily C member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:43,374,151...43,391,418 JBrowse link
G LLGL1 LLGL scribble cell polarity complex component 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:17,266,648...17,285,460
Ensembl chr16:17,266,684...17,284,076 		JBrowse link
G LLGL2 LLGL scribble cell polarity complex component 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:46,103,080...46,151,576
Ensembl chr16:46,102,939...46,135,594 		JBrowse link
G NCKAP1 NCK associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:68,434,839...68,546,431
Ensembl chr10:68,433,258...68,545,990 		JBrowse link
G NCKAP1L NCK associated protein 1 like involved_in ISO (PMID:16417406), (PMID:32647003)
(PMID:23424621) 		UniProt PMID:16417406 PMID:23424621 PMID:32647003 NCBI chr11:50,611,193...50,658,800 JBrowse link
G NCKAP1L NCK associated protein 1 like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr11:50,611,181...50,647,519 JBrowse link
G PLEK pleckstrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:38,689,387...38,769,090
Ensembl chr14:38,689,393...38,745,893 		JBrowse link
G RAB13 RAB13, member RAS oncogene family involved_in ISO PMID:23419316 UniProt PMID:23419316 RGD:8554106 NCBI chr20:9,832,220...9,836,890 JBrowse link
G RHOQ ras homolog family member Q involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:60,605,881...60,648,444
Ensembl chr14:60,608,998...60,648,193 		JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:59,384,822...59,538,780
Ensembl chr18:59,384,944...59,540,070 		JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:96,275,889...96,443,048
Ensembl chr14:96,276,023...96,432,790 		JBrowse link
G STRIP1 striatin interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:23,487,653...23,508,732
Ensembl chr20:23,486,666...23,508,238 		JBrowse link
G TLN1 talin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:44,870,004...44,906,686
Ensembl chr12:44,876,643...44,907,072 		JBrowse link
cortical microtubule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLG1 discs large MAGUK scaffold protein 1 involved_in ISO (PMID:20551903) UniProt PMID:20551903 NCBI chr15:89,937,900...90,214,976
Ensembl chr15:90,055,964...90,215,652 		JBrowse link
G EZR ezrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:86,342,954...86,399,827
Ensembl chr13:86,344,051...86,370,622 		JBrowse link
G KANK1 KN motif and ankyrin repeat domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:78,775,214...79,015,538
Ensembl chr12:78,774,788...78,973,851 		JBrowse link
G KIF21A kinesin family member 21A involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:35,552,583...35,709,117
Ensembl chr11:35,552,398...35,709,070 		JBrowse link
G LOC103218783 liprin-beta-1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:27,241,332...27,417,421
Ensembl chr11:27,298,975...27,414,756 		JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:2,270,126...2,293,705
Ensembl chr16:2,270,085...2,296,825 		JBrowse link
G PPFIA1 PTPRF interacting protein alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:4,184,592...4,302,677
Ensembl chr 1:4,181,681...4,301,206 		JBrowse link
G TLN1 talin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:44,870,004...44,906,686
Ensembl chr12:44,876,643...44,907,072 		JBrowse link
G TRPV4 transient receptor potential cation channel subfamily V member 4 involved_in ISO PMID:20657843 BHF-UCL PMID:20657843 RGD:8553293 NCBI chr11:105,020,972...105,072,660 JBrowse link
cytoskeletal matrix organization at active zone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NLGN1 neuroligin 1 involved_in ISO PMID:19628693
(PMID:19628693) 		BHF-UCL PMID:19628693 RGD:8554760 NCBI chr15:15,129,976...16,017,107 JBrowse link
G NLGN1 neuroligin 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:15,131,866...15,141,276 JBrowse link
mitotic actomyosin contractile ring assembly actin filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IQGAP1 IQ motif containing GTPase activating protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:9,363,273...9,485,644
Ensembl chr29:9,362,926...9,485,526 		JBrowse link
G IQGAP2 IQ motif containing GTPase activating protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:70,672,171...70,979,766
Ensembl chr 4:70,672,553...70,979,763 		JBrowse link
G IQGAP3 IQ motif containing GTPase activating protein 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:7,286,819...7,334,352
Ensembl chr20:7,286,886...7,333,284 		JBrowse link
regulation of cytokinesis, actomyosin contractile ring assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ECT2 epithelial cell transforming 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:16,612,738...16,685,455
Ensembl chr15:16,612,443...16,685,386 		JBrowse link
terminal web assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EZR ezrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:86,342,954...86,399,827
Ensembl chr13:86,344,051...86,370,622 		JBrowse link
G PLS1 plastin 1 acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:22114352) Ensembl
UniProt		 PMID:22114352 GO_REF:0000107 NCBI chr15:47,919,807...48,031,158
Ensembl chr15:47,919,823...48,003,805 		JBrowse link
G VIL1 villin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:104,311,048...104,350,846
Ensembl chr10:104,320,074...104,347,289 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19706
    cellular process 19211
      cellular component organization or biogenesis 8786
        cellular component organization 8574
          organelle organization 3611
            cytoskeleton organization 1531
              cortical cytoskeleton organization 54
                cortical actin cytoskeleton organization + 42
                cortical microtubule organization 9
                cytoskeletal matrix organization at active zone 2
paths to the root