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ONTOLOGY REPORT - ANNOTATIONS


Term:cortical cytoskeleton organization
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Accession:GO:0030865 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane.
Synonyms:exact_synonym: cortical cytoskeleton organisation
 related_synonym: cortical cytoskeleton organization and biogenesis



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cortical cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:72,647,025...72,670,885
Ensembl chr 6:72,647,025...72,672,491
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISS
ISO
GO_REF:0000024
(MGI:3583523|PMID:12960403)
UniProt
RGD
PMID:12960403 GO_REF:0000024 MGI:3583523 NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282
JBrowse link
G Rac1 Rac family small GTPase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
JBrowse link
G Rac3 Rac family small GTPase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,002,808...106,005,243
Ensembl chr10:105,993,087...106,005,260
JBrowse link
G Rhog ras homolog family member G involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:156,618,713...156,630,710
Ensembl chr 1:156,615,349...156,631,257
JBrowse link
G Septin7 septin 7 acts_upstream_of_or_within ISO (PMID:22232702) RGD PMID:22232702 NCBI chr 8:23,719,448...23,783,247
Ensembl chr 8:23,716,030...23,783,243
JBrowse link
G Wdr1 WD repeat domain 1 involved_in ISO (MGI:3784948|PMID:17515402) RGD PMID:17515402 MGI:3784948 NCBI chr14:72,258,032...72,291,768
Ensembl chr14:72,257,956...72,291,766
JBrowse link
actomyosin contractile ring assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anln anillin, actin binding protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:20,858,227...20,921,602
Ensembl chr 8:20,858,228...20,921,538
JBrowse link
G Anlnl1 anillin, actin binding protein-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:57,985,340...57,995,824
Ensembl chr17:57,986,511...57,989,997
JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5819325|PMID:27336173)
UniProt
Ensembl
RGD
PMID:27336173 GO_REF:0000024 GO_REF:0000107 MGI:5819325 NCBI chr 8:113,590,998...113,646,795
Ensembl chr 8:113,590,998...113,646,773
JBrowse link
G Racgap1 Rac GTPase-activating protein 1 involved_in ISO (PMID:16129829) RGD PMID:16129829 NCBI chr 7:130,750,936...130,780,891
Ensembl chr 7:130,750,936...130,780,831
JBrowse link
G Rtkn rhotekin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:115,640,813...115,657,952
Ensembl chr 4:115,640,774...115,657,952
JBrowse link
actomyosin contractile ring assembly actin filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plec plectin involved_in IEA
ISO
GO_REF:0000107
MGI:3721885 (PMID:26519478)
Ensembl
RGD
PMID:26519478 GO_REF:0000107 NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467
JBrowse link
cortical actin cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap11 A-kinase anchoring protein 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5751858 (PMID:27402760)
Ensembl
RGD
PMID:27402760 GO_REF:0000107 NCBI chr15:53,911,635...53,956,138
Ensembl chr15:53,911,657...53,941,605
JBrowse link
G Arf6 ADP-ribosylation factor 6 involved_in ISO (PMID:10036235), (PMID:10913182) RGD PMID:10036235 PMID:10913182 NCBI chr 6:87,853,742...87,854,890
Ensembl chr 6:87,840,142...87,874,114
JBrowse link
G Calr calreticulin acts_upstream_of_or_within ISO (PMID:15136153) RGD PMID:15136153 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414
JBrowse link
G Cavin3 caveolae associated protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5518819 (PMID:24069528)
Ensembl
RGD
PMID:24069528 GO_REF:0000107 NCBI chr 1:159,826,549...159,828,138
Ensembl chr 1:159,826,549...159,828,161
JBrowse link
G Cdk5 cyclin-dependent kinase 5 IMP RGD PMID:15331630 RGD:1598417 NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:14699157)
UniProt
Ensembl
RGD
PMID:14699157 GO_REF:0000024 GO_REF:0000107 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
JBrowse link
G Ehd2 EH-domain containing 2 acts_upstream_of_or_within ISO (PMID:15247266) RGD PMID:15247266 NCBI chr 1:76,639,568...76,658,747
Ensembl chr 1:76,637,482...76,658,783
JBrowse link
G Epb41 erythrocyte membrane protein band 4.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:144,110,010...144,264,037
Ensembl chr 5:144,111,906...144,237,821
JBrowse link
G Epb41l1 erythrocyte membrane protein band 4.1-like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:144,929,195...145,052,723
Ensembl chr 3:144,984,640...145,052,721
JBrowse link
G Epb41l2 erythrocyte membrane protein band 4.1-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:19,863,010...20,037,795
Ensembl chr 1:19,863,009...20,037,721
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:109,056,178...109,260,607
Ensembl chr 9:109,016,113...109,260,607
JBrowse link
G Fhod1 formin homology 2 domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:33,206,492...33,225,448
Ensembl chr19:33,206,492...33,225,356
JBrowse link
G Fhod3 formin homology 2 domain containing 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:15,993,079...16,425,796
Ensembl chr18:15,993,324...16,425,796
JBrowse link
G Fmnl1 formin-like 1 involved_in ISO
IBA
(PMID:21834987)
GO_REF:0000033
RGD
GO_Central
PMID:21834987 GO_REF:0000033 NCBI chr10:88,115,876...88,143,342
Ensembl chr10:88,116,009...88,143,357
JBrowse link
G Fmnl2 formin-like 2 involved_in ISO
IBA
(PMID:21834987)
GO_REF:0000033
RGD
GO_Central
PMID:21834987 GO_REF:0000033 NCBI chr 3:37,348,791...37,624,746
Ensembl chr 3:37,348,574...37,624,754
JBrowse link
G Fmnl3 formin-like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:130,454,270...130,505,626
Ensembl chr 7:130,454,275...130,505,626
JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta involved_in ISO
IEA
(PMID:25816133)
GO_REF:0000107
RGD
Ensembl
PMID:25816133 GO_REF:0000107 NCBI chr16:69,319,487...69,373,251
Ensembl chr16:69,319,554...69,373,250
JBrowse link
G Kcnc3 potassium voltage-gated channel subfamily C member 3 involved_in ISO
ISS
(PMID:26997484)
GO_REF:0000024
RGD
UniProt
PMID:26997484 GO_REF:0000024 NCBI chr 1:95,080,960...95,095,165
Ensembl chr 1:95,080,960...95,095,160
JBrowse link
G Llgl1 LLGL scribble cell polarity complex component 1 involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:7542763)
Ensembl
GO_Central
RGD
PMID:7542763 GO_REF:0000033 GO_REF:0000107 NCBI chr10:45,379,423...45,394,096
Ensembl chr10:45,379,515...45,394,094
JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:101,050,978...101,086,527
Ensembl chr10:101,051,408...101,086,525
JBrowse link
G Nckap1 NCK-associated protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217
JBrowse link
G Nckap1l NCK associated protein 1 like involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:16417406), (PMID:32647003)
(MGI:5502518|PMID:23424621)
UniProt
GO_Central
RGD
PMID:16417406 PMID:23424621 PMID:32647003 GO_REF:0000024 GO_REF:0000033 MGI:5502518 NCBI chr 7:134,577,470...134,622,928
Ensembl chr 7:134,577,482...134,622,934
JBrowse link
G Plek pleckstrin involved_in ISO (PMID:10497244) RGD PMID:10497244 NCBI chr14:91,397,015...91,429,693
Ensembl chr14:91,397,019...91,454,131
JBrowse link
G Rab13 RAB13, member RAS oncogene family involved_in IMP PMID:23419316 UniProt PMID:23419316 RGD:8554106 NCBI chr 2:175,674,894...175,680,043
Ensembl chr 2:175,675,005...175,680,036
JBrowse link
G Rhoq ras homolog family member Q involved_in ISO
IBA
(PMID:11821390)
GO_REF:0000033
(MGI:2178001|PMID:11821390)
RGD
GO_Central
PMID:11821390 GO_REF:0000033 MGI:2178001 NCBI chr 6:7,613,632...7,652,047 JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
UniProtKB:O75116 (PMID:25816133)
Ensembl
GO_Central
RGD
PMID:25816133 GO_REF:0000033 GO_REF:0000107 NCBI chr18:1,114,532...1,236,345
Ensembl chr18:1,115,905...1,235,571
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in ISO
IBA
IEA
UniProtKB:Q13464 (PMID:25816133)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:25816133 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:39,679,116...39,774,033
Ensembl chr 6:39,679,082...39,774,031
JBrowse link
G Strip1 striatin interacting protein 1 involved_in ISO (PMID:21834987) RGD PMID:21834987 NCBI chr 2:195,248,384...195,268,330
Ensembl chr 2:195,248,386...195,268,481
JBrowse link
G Tln1 talin 1 acts_upstream_of_or_within ISO (PMID:12867986) RGD PMID:12867986 NCBI chr 5:57,787,670...57,817,900
Ensembl chr 5:57,787,943...57,817,900
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:25816133) RGD PMID:25816133 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
cortical microtubule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg1 discs large MAGUK scaffold protein 1 involved_in ISO
IEA
(PMID:20551903)
GO_REF:0000107
RGD
Ensembl
PMID:20551903 GO_REF:0000107 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
JBrowse link
G Ezr ezrin involved_in ISO
IEA
(PMID:20551903)
GO_REF:0000107
RGD
Ensembl
PMID:20551903 GO_REF:0000107 NCBI chr 1:46,967,961...47,011,505
Ensembl chr 1:46,967,658...47,011,505
JBrowse link
G Kank1 KN motif and ankyrin repeat domains 1 involved_in ISO (PMID:24120883), (PMID:27410476) RGD PMID:24120883 PMID:27410476 NCBI chr 1:222,877,962...223,074,514
Ensembl chr 1:222,877,622...223,074,514
JBrowse link
G Kif21a kinesin family member 21A involved_in ISO (PMID:24120883) RGD PMID:24120883 NCBI chr 7:122,062,523...122,179,051
Ensembl chr 7:122,062,537...122,178,999
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO (MGI:5293247|PMID:21844209) RGD PMID:21844209 MGI:5293247 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
JBrowse link
G Ppfia1 PTPRF interacting protein alpha 1 involved_in ISO (PMID:24120883) RGD PMID:24120883 NCBI chr 1:199,641,277...199,718,371
Ensembl chr 1:199,641,277...199,717,277
JBrowse link
G Ppfibp1 PPFIA binding protein 1 involved_in ISO (PMID:24120883) RGD PMID:24120883 NCBI chr 4:179,807,579...179,951,428
Ensembl chr 4:179,808,794...179,951,428
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in IDA PMID:20657843 BHF-UCL PMID:20657843 RGD:8553293 NCBI chr12:41,938,533...41,977,517
Ensembl chr12:41,938,560...41,977,517
JBrowse link
cytoskeletal matrix organization at active zone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 involved_in IMP
ISO
IEA
PMID:19628693
(MGI:4355770|PMID:19628693)
GO_REF:0000107
RGD
Ensembl
PMID:19628693 PMID:19628693 GO_REF:0000107 MGI:4355770, RGD:8554760 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464
JBrowse link
mitotic actomyosin contractile ring assembly actin filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Iqgap1 IQ motif containing GTPase activating protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:134,679,581...134,769,776
Ensembl chr 1:134,679,586...134,769,755
JBrowse link
G Iqgap2 IQ motif containing GTPase activating protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:26,894,836...27,170,270
Ensembl chr 2:26,894,825...27,170,279
JBrowse link
G Iqgap3 IQ motif containing GTPase activating protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:173,542,151...173,583,956
Ensembl chr 2:173,542,110...173,583,956
JBrowse link
regulation of cytokinesis, actomyosin contractile ring assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ect2 epithelial cell transforming 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:109,975,813...110,037,911
Ensembl chr 2:109,975,813...110,037,911
JBrowse link
terminal web assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezr ezrin involved_in ISO
IEA
UniProtKB:Q3V0K9|UniProtKB:Q62468 (MGI:5621262|PMID:22114352)
GO_REF:0000107
RGD
Ensembl
PMID:22114352 GO_REF:0000107 MGI:5621262 NCBI chr 1:46,967,961...47,011,505
Ensembl chr 1:46,967,658...47,011,505
JBrowse link
G Pls1 plastin 1 involved_in
acts_upstream_of_or_within
ISO UniProtKB:P26040|UniProtKB:Q62468 (MGI:5621262|PMID:22114352)
MGI:5609592 (PMID:19321664)
RGD PMID:19321664 PMID:22114352 MGI:5621262 NCBI chr 8:96,316,703...96,426,592
Ensembl chr 8:96,317,849...96,385,195
JBrowse link
G Vil1 villin 1 involved_in ISO UniProtKB:P26040|UniProtKB:Q3V0K9 (MGI:5621262|PMID:22114352) RGD PMID:22114352 MGI:5621262 NCBI chr 9:75,991,141...76,018,860
Ensembl chr 9:75,991,141...76,018,858
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19870
    cellular process 18312
      cellular component organization or biogenesis 6999
        cellular component organization 6747
          organelle organization 3721
            cytoskeleton organization 1532
              cortical cytoskeleton organization 57
                cortical actin cytoskeleton organization + 43
                cortical microtubule organization 8
                cytoskeletal matrix organization at active zone 1
paths to the root