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ONTOLOGY REPORT - ANNOTATIONS


Term:cortical cytoskeleton
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Accession:GO:0030863 term browser browse the term
Definition:The portion of the cytoskeleton that lies just beneath the plasma membrane.



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cortical cytoskeleton term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta located_in IEA
ISO
GO_REF:0000107
(MGI:3806792|PMID:18723693)
Ensembl
RGD
PMID:18723693 GO_REF:0000107 MGI:3806792 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
JBrowse link
G Actn4 actinin alpha 4 located_in ISO (MGI:2674212|PMID:12960352) RGD PMID:12960352 MGI:2674212 NCBI chr 1:84,182,783...84,251,867
Ensembl chr 1:84,182,788...84,251,847
JBrowse link
G Ank1 ankyrin 1 located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr16:68,876,294...69,054,812
Ensembl chr16:68,877,504...69,054,759
JBrowse link
G Capza1 capping actin protein of muscle Z-line subunit alpha 1 located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr 2:192,319,696...192,364,755
Ensembl chr 2:192,319,702...192,364,480
JBrowse link
G Capza2 capping actin protein of muscle Z-line subunit alpha 2 located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr 4:45,978,142...46,014,032
Ensembl chr 4:45,977,807...46,013,864
JBrowse link
G Capza3 capping actin protein of muscle Z-line subunit alpha 3 located_in IEA
ISO
GO_REF:0000107
(MGI:3806792|PMID:18723693)
Ensembl
RGD
PMID:18723693 GO_REF:0000107 MGI:3806792 NCBI chr 4:172,929,273...172,930,486
Ensembl chr 4:172,928,887...172,932,535
JBrowse link
G Capzb capping actin protein of muscle Z-line subunit beta located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr 5:151,435,600...151,535,409
Ensembl chr 5:151,434,871...151,535,409
JBrowse link
G Cttn cortactin located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:12151401)
UniProt
Ensembl
RGD
PMID:12151401 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:199,599,710...199,635,254
Ensembl chr 1:199,599,710...199,635,164
JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 located_in ISO (PMID:12151521) RGD PMID:12151521 NCBI chr10:54,740,700...54,769,097
Ensembl chr10:54,739,470...54,767,153
JBrowse link
G Dmtn dematin actin binding protein located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr15:45,677,974...45,705,601
Ensembl chr15:45,677,977...45,705,601
JBrowse link
G Epb41 erythrocyte membrane protein band 4.1 located_in ISO (PMID:16254212)
(MGI:3806792|PMID:18723693)
RGD PMID:16254212 PMID:18723693 MGI:3806792 NCBI chr 5:144,110,010...144,264,037
Ensembl chr 5:144,111,906...144,237,821
JBrowse link
G Epb42 erythrocyte membrane protein band 4.2 located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr 3:107,979,709...107,997,932
Ensembl chr 3:107,979,713...107,997,932
JBrowse link
G Flna filamin A IDA RGD PMID:15661894 RGD:2312435 NCBI chr  X:152,007,758...152,034,266
Ensembl chr  X:152,007,758...152,031,052
JBrowse link
G Gypc glycophorin C located_in
is_active_in
ISO
IBA
(PMID:16669616)
PMID:21873635
(MGI:3806792|PMID:18723693)
RGD PMID:16669616 PMID:18723693 PMID:21873635 MGI:3806792, RGD:13792537 NCBI chr18:24,160,738...24,193,408
Ensembl chr18:24,160,739...24,193,204
JBrowse link
G Inpp5d inositol polyphosphate-5-phosphatase D IDA RGD PMID:15661894 RGD:2312435 NCBI chr 9:88,287,680...88,392,748
Ensembl chr 9:88,287,677...88,392,746
JBrowse link
G Mpp1 MAGUK p55 scaffold protein 1 located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792
G Myh9 myosin, heavy chain 9 located_in ISO (MGI:3052228|PMID:12893741) RGD PMID:12893741 MGI:3052228 NCBI chr 7:109,343,718...109,424,457
Ensembl chr 7:109,343,706...109,424,457
JBrowse link
G Nos2 nitric oxide synthase 2 located_in IEA
ISO
GO_REF:0000107
(MGI:2674212|PMID:12960352)
Ensembl
RGD
PMID:12960352 GO_REF:0000107 MGI:2674212 NCBI chr10:63,815,308...63,851,208
Ensembl chr10:63,815,308...63,851,210
JBrowse link
G Nsmf NMDA receptor synaptonuclear signaling and neuronal migration factor located_in IDA PMID:18303947 UniProt PMID:18303947 RGD:8553324 NCBI chr 3:7,861,846...7,870,615
Ensembl chr 3:7,861,872...7,870,614
JBrowse link
G Sele selectin E located_in ISO (PMID:8609175) RGD PMID:8609175 NCBI chr13:76,402,841...76,412,741
Ensembl chr13:76,403,304...76,412,741
JBrowse link
G Slc4a1 solute carrier family 4 member 1 (Diego blood group) located_in ISO
ISS
(PMID:16669616)
(MGI:3806792|PMID:18723693)
GO_REF:0000024
RGD
UniProt
PMID:16669616 PMID:18723693 GO_REF:0000024 MGI:3806792 NCBI chr10:87,306,865...87,323,132
Ensembl chr10:87,306,872...87,323,117
JBrowse link
G Spta1 spectrin, alpha, erythrocytic 1 located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr13:86,203,504...86,279,371
Ensembl chr13:86,203,504...86,279,371
JBrowse link
G Sptan1 spectrin, alpha, non-erythrocytic 1 located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr 3:13,241,164...13,306,047
Ensembl chr 3:13,241,217...13,306,046
JBrowse link
G Sptb spectrin, beta, erythrocytic located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr 6:95,310,342...95,437,221
Ensembl chr 6:95,310,326...95,437,118
JBrowse link
G Sptbn1 spectrin, beta, non-erythrocytic 1 located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr14:103,842,684...104,008,507
Ensembl chr14:103,842,684...104,008,507
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 located_in ISO (MGI:3821785|PMID:18796539) RGD PMID:18796539 MGI:3821785 NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324
JBrowse link
G Tmod1 tropomodulin 1 located_in ISO (MGI:3806792|PMID:18723693) RGD PMID:18723693 MGI:3806792 NCBI chr 5:60,316,445...60,393,957
Ensembl chr 5:60,338,512...60,393,956
JBrowse link
G Tpm3 tropomyosin 3 located_in ISO (MGI:1196796|PMID:9473354), (MGI:3688320|PMID:16765662) RGD PMID:9473354 PMID:16765662 MGI:1196796 MGI:3688320 NCBI chr 2:175,517,198...175,545,014
Ensembl chr 2:175,517,226...175,545,013
JBrowse link
G Tpm4 tropomyosin 4 located_in ISO
IEA
(MGI:3688320|PMID:16765662)
GO_REF:0000107
RGD
Ensembl
PMID:16765662 GO_REF:0000107 MGI:3688320 NCBI chr16:17,684,415...17,698,456
Ensembl chr16:17,683,195...17,705,984
JBrowse link
G Trpc4 transient receptor potential cation channel, subfamily C, member 4 located_in ISO
IEA
(PMID:16254212)
GO_REF:0000107
RGD
Ensembl
PMID:16254212 GO_REF:0000107 NCBI chr 2:138,307,676...138,476,856
Ensembl chr 2:138,308,084...138,476,768
JBrowse link
actin cap term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 located_in ISO (MGI:5006872|PMID:21494665), (MGI:5293241|PMID:21874009) RGD PMID:21494665 PMID:21874009 MGI:5006872 MGI:5293241 NCBI chr14:94,296,443...94,333,735
Ensembl chr14:94,296,443...94,340,524
JBrowse link
G Cald1 caldesmon 1 located_in ISO (MGI:3036595|PMID:2909534) RGD PMID:2909534 MGI:3036595 NCBI chr 4:63,265,781...63,446,936
Ensembl chr 4:63,265,942...63,446,932
JBrowse link
G Gsn gelsolin located_in ISO (PMID:23575248) RGD PMID:23575248 NCBI chr 3:18,585,166...18,638,404
Ensembl chr 3:18,585,172...18,638,402
JBrowse link
G Wasl WASP like actin nucleation promoting factor located_in IEA
ISO
GO_REF:0000107
(MGI:5293241|PMID:21874009)
Ensembl
RGD
PMID:21874009 GO_REF:0000107 MGI:5293241 NCBI chr 4:53,083,536...53,132,061
Ensembl chr 4:53,083,536...53,132,022
JBrowse link
actomyosin contractile ring term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anln anillin, actin binding protein located_in
is_active_in
ISO
IBA
(PMID:10931866)
PMID:21873635
RGD PMID:10931866 PMID:21873635 RGD:13792537 NCBI chr 8:20,858,227...20,921,602
Ensembl chr 8:20,858,228...20,921,538
JBrowse link
G Anlnl1 anillin, actin binding protein-like 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:57,985,340...57,995,824
Ensembl chr17:57,986,511...57,989,997
JBrowse link
G Maea macrophage erythroblast attacher, E3 ubiquitin ligase located_in ISO (PMID:16510120) RGD PMID:16510120 NCBI chr14:77,357,261...77,390,683
Ensembl chr14:77,357,264...77,390,671
JBrowse link
G Myh2 myosin heavy chain 2 located_in ISO (MGI:3575233|PMID:15548599) RGD PMID:15548599 MGI:3575233 NCBI chr10:51,856,738...51,883,236
Ensembl chr10:51,856,738...51,883,236
JBrowse link
G Myh9 myosin, heavy chain 9 located_in ISO
IEA
ISS
(PMID:11029059)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:11029059 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:109,343,718...109,424,457
Ensembl chr 7:109,343,706...109,424,457
JBrowse link
G Pstpip1 proline-serine-threonine phosphatase-interacting protein 1 located_in ISO (MGI:1335001|PMID:9265651) RGD PMID:9265651 MGI:1335001 NCBI chr 8:56,499,287...56,538,593
Ensembl chr 8:56,499,590...56,538,580
JBrowse link
G Rtkn rhotekin is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:115,640,801...115,657,952
Ensembl chr 4:115,640,774...115,657,952
JBrowse link
cortical actin cytoskeleton term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn1 actinin, alpha 1 colocalizes_with IDA RGD PMID:15505042 RGD:1359754 NCBI chr 6:98,998,553...99,093,334
Ensembl chr 6:98,998,556...99,093,251
JBrowse link
G Actn2 actinin alpha 2 colocalizes_with IDA RGD PMID:15505042 RGD:1359754 NCBI chr17:58,143,334...58,210,622
Ensembl chr17:58,142,625...58,210,622
JBrowse link
G Actn3 actinin alpha 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012
JBrowse link
G Actn4 actinin alpha 4 is_active_in
located_in
IBA
ISO
PMID:21873635
(MGI:3692220|PMID:16837921)
RGD PMID:16837921 PMID:21873635 MGI:3692220, RGD:13792537 NCBI chr 1:84,182,783...84,251,867
Ensembl chr 1:84,182,788...84,251,847
JBrowse link
G Akap13 A-kinase anchoring protein 13 colocalizes_with ISO
ISS
(PMID:11546812)
GO_REF:0000024
RGD
UniProt
PMID:11546812 GO_REF:0000024 NCBI chr 1:129,313,183...129,619,647
Ensembl chr 1:129,314,402...129,619,646
JBrowse link
G Cap1 cyclase associated actin cytoskeleton regulatory protein 1 located_in ISO (MGI:3047055|PMID:15004221) RGD PMID:15004221 MGI:3047055 NCBI chr 5:135,142,108...135,168,885
Ensembl chr 5:135,142,112...135,168,769
JBrowse link
G Cdc45 cell division cycle 45 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619
JBrowse link
G Cdh1 cadherin 1 colocalizes_with ISO (PMID:24046456) RGD PMID:24046456 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775
JBrowse link
G Cdh2 cadherin 2 colocalizes_with
located_in
ISO
IEA
(PMID:24046456)
GO_REF:0000107
RGD
Ensembl
PMID:24046456 GO_REF:0000107 NCBI chr18:7,776,704...7,990,934
Ensembl chr18:7,776,704...7,990,167
JBrowse link
G Cfl1 cofilin 1 located_in ISO (MGI:3047055|PMID:15004221), (MGI:3575233|PMID:15548599) RGD PMID:15004221 PMID:15548599 MGI:3047055 MGI:3575233 NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587
JBrowse link
G Cldn5 claudin 5 colocalizes_with ISO (PMID:25816133) RGD PMID:25816133 NCBI chr11:82,212,822...82,214,248
Ensembl chr11:82,211,475...82,214,992
JBrowse link
G Coro1a coronin 1A colocalizes_with
located_in
ISO (PMID:24760828)
(PMID:15800061)
RGD PMID:15800061 PMID:24760828 NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Cotl1 coactosin-like F-actin binding protein 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:47,871,689...47,906,010
Ensembl chr19:47,871,694...47,911,689
JBrowse link
G Cttn cortactin is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:199,599,710...199,635,254
Ensembl chr 1:199,599,710...199,635,164
JBrowse link
G Dbn1 drebrin 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:9,150,608...9,164,982
Ensembl chr17:9,150,659...9,164,984
JBrowse link
G Dbnl drebrin-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:80,666,115...80,681,155
Ensembl chr14:80,666,124...80,681,155
JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein located_in ISO (PMID:19158340) RGD PMID:19158340 NCBI chr16:55,246,716...55,671,441
Ensembl chr16:55,291,584...55,671,439
JBrowse link
G Dmd dystrophin is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:47,272,324...49,504,219
Ensembl chr  X:47,272,331...49,504,207
JBrowse link
G Dstn destrin, actin depolymerizing factor located_in ISO (MGI:3575233|PMID:15548599) RGD PMID:15548599 MGI:3575233 NCBI chr 3:131,284,647...131,311,361
Ensembl chr 3:131,284,648...131,311,379
JBrowse link
G Eef1a1 eukaryotic translation elongation factor 1 alpha 1 located_in ISO (PMID:19158340) RGD PMID:19158340 NCBI chr 8:79,341,554...79,344,784
Ensembl chr 8:79,341,557...79,344,839
JBrowse link
G Flot1 flotillin 1 colocalizes_with ISO (PMID:24046456) RGD PMID:24046456 NCBI chr20:2,917,864...2,927,993
Ensembl chr20:2,917,137...2,927,978
JBrowse link
G Flot2 flotillin 2 colocalizes_with ISO (PMID:24046456) RGD PMID:24046456 NCBI chr10:62,926,047...62,947,759
Ensembl chr10:62,920,665...62,947,756
JBrowse link
G Gsn gelsolin colocalizes_with
located_in
ISO (PMID:23575248)
(PMID:24236012)
RGD PMID:23575248 PMID:24236012 NCBI chr 3:18,585,166...18,638,404
Ensembl chr 3:18,585,172...18,638,402
JBrowse link
G Gys2 glycogen synthase 2 located_in IDA PMID:9003423 UniProt PMID:9003423 RGD:8553883 NCBI chr 4:175,365,054...175,406,228
Ensembl chr 4:175,365,054...175,406,228
JBrowse link
G Hcls1 hematopoietic cell specific Lyn substrate 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:63,817,482...63,840,943
Ensembl chr11:63,817,476...63,841,014
JBrowse link
G Iqgap1 IQ motif containing GTPase activating protein 1 located_in ISO PR:P46940 (MGI:5907777|PMID:28089576) RGD PMID:28089576 MGI:5907777 NCBI chr 1:134,679,581...134,769,776
Ensembl chr 1:134,679,586...134,769,755
JBrowse link
G Lancl2 LanC like 2 located_in ISO (PMID:16979580) RGD PMID:16979580 NCBI chr 4:87,441,821...87,483,707
Ensembl chr 4:87,441,823...87,482,800
JBrowse link
G Lasp1 LIM and SH3 protein 1 located_in IDA PMID:10806114 UniProt PMID:10806114 RGD:8553950 NCBI chr10:82,795,177...82,835,659
Ensembl chr10:82,795,137...82,943,292
JBrowse link
G Llgl1 LLGL scribble cell polarity complex component 1 located_in
is_active_in
ISO
IBA
IEA
(PMID:7542763)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:7542763 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:45,379,423...45,394,096
Ensembl chr10:45,379,515...45,394,094
JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:101,050,978...101,086,527
Ensembl chr10:101,051,408...101,086,525
JBrowse link
G Med28 mediator complex subunit 28 located_in ISO (MGI:3513729|PMID:15467741) RGD PMID:15467741 MGI:3513729 NCBI chr14:65,594,785...65,603,583
Ensembl chr14:65,594,647...65,603,583
JBrowse link
G Misp mitotic spindle positioning colocalizes_with ISO (PMID:23509069) RGD PMID:23509069 NCBI chr 7:9,870,390...9,886,541
Ensembl chr 7:9,870,444...9,886,541
JBrowse link
G Mlph melanophilin located_in
is_active_in
ISO
IBA
(MGI:3611941|PMID:16247022)
PMID:21873635
RGD PMID:16247022 PMID:21873635 MGI:3611941, RGD:13792537 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
JBrowse link
G Mobp myelin-associated oligodendrocyte basic protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:119,869,504...119,899,605
Ensembl chr 8:119,869,626...119,899,563
JBrowse link
G Mtss2 MTSS I-BAR domain containing 2 located_in ISO (MGI:3810204|PMID:18413296) RGD PMID:18413296 MGI:3810204 NCBI chr19:38,692,793...38,714,575
Ensembl chr19:38,693,194...38,713,507
JBrowse link
G Myadm myeloid-associated differentiation marker located_in ISO
IEA
(PMID:21325632), (PMID:23264465)
GO_REF:0000107
RGD
Ensembl
PMID:21325632 PMID:23264465 GO_REF:0000107 NCBI chr 1:65,864,180...65,874,701
Ensembl chr 1:65,864,173...65,874,035
JBrowse link
G Myo1a myosin IA located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:8692943)
UniProt
Ensembl
RGD
PMID:8692943 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:63,542,988...63,557,944
Ensembl chr 7:63,542,988...63,557,944
JBrowse link
G Myo1f myosin IF located_in ISO (MGI:3664353|PMID:17023661) RGD PMID:17023661 MGI:3664353 NCBI chr 7:14,363,340...14,413,911
Ensembl chr 7:14,363,350...14,413,911
JBrowse link
G Myrip myosin VIIA and Rab interacting protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:120,017,843...120,184,821
Ensembl chr 8:120,017,524...120,183,833
JBrowse link
G Myzap myocardial zonula adherens protein colocalizes_with ISS
ISO
GO_REF:0000024
(MGI:4947500|PMID:20093627)
UniProt
RGD
PMID:20093627 GO_REF:0000024 MGI:4947500 NCBI chr 8:72,155,817...72,243,036
Ensembl chr 8:72,131,530...72,243,036
JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor located_in ISO (MGI:3513729|PMID:15467741) RGD PMID:15467741 MGI:3513729 NCBI chr14:79,627,399...79,710,709
Ensembl chr14:79,627,399...79,710,667
JBrowse link
G Pdlim2 PDZ and LIM domain 2 colocalizes_with IDA RGD PMID:15505042 RGD:1359754 NCBI chr15:45,235,421...45,250,187
Ensembl chr15:45,237,477...45,249,242
JBrowse link
G Pjvk pejvakin located_in ISO (MGI:5907777|PMID:28089576) RGD PMID:28089576 MGI:5907777 NCBI chr 3:61,594,644...61,605,051
Ensembl chr 3:61,596,641...61,605,045
JBrowse link
G Plekhh2 pleckstrin homology, MyTH4 and FERM domain containing H2 located_in ISO (MGI:5487756|PMID:22832517) RGD PMID:22832517 MGI:5487756 NCBI chr 6:10,032,837...10,132,081
Ensembl chr 6:10,032,660...10,140,794
JBrowse link
G Ppp1r9a protein phosphatase 1, regulatory subunit 9A located_in ISO (MGI:3583726|PMID:15996550) RGD PMID:15996550 MGI:3583726 NCBI chr 4:32,970,501...33,292,360
Ensembl chr 4:33,024,450...33,286,907
JBrowse link
G Ppp1r9b protein phosphatase 1, regulatory subunit 9B located_in ISO (MGI:3583726|PMID:15996550) RGD PMID:15996550 MGI:3583726 NCBI chr10:79,938,055...79,954,085
Ensembl chr10:79,938,066...79,954,083
JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor 3 colocalizes_with IDA
ISO
PMID:21047789
(PMID:21047789)
RGD PMID:21047789 PMID:21047789 RGD:10054076 NCBI chr 7:128,875,772...128,898,203
Ensembl chr 7:128,875,773...128,898,521
JBrowse link
G Rdx radixin located_in ISO
IDA
(MGI:5645204|PMID:21047789) RGD PMID:21047789 PMID:21047789 MGI:5645204, RGD:10054076 NCBI chr 8:52,379,494...52,437,673
Ensembl chr 8:52,379,494...52,437,678
JBrowse link
G Scnn1a sodium channel epithelial 1 subunit alpha IDA RGD PMID:16356937 RGD:1624121 NCBI chr 4:158,122,962...158,146,184
Ensembl chr 4:158,122,962...158,146,181
JBrowse link
G Shroom1 shroom family member 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:37,621,149...37,631,895
Ensembl chr10:37,621,723...37,631,256
JBrowse link
G Shroom2 shroom family member 2 colocalizes_with
is_active_in
located_in
ISO
IBA
IEA
(PMID:16684770)
PMID:21873635
GO_REF:0000107
(MGI:3690292|PMID:16684770)
RGD
Ensembl
PMID:16684770 PMID:21873635 GO_REF:0000107 MGI:3690292, RGD:13792537 NCBI chr  X:21,812,469...21,983,724
Ensembl chr  X:21,812,469...21,984,153
JBrowse link
G Shroom3 shroom family member 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:15,099,415...15,396,832
Ensembl chr14:15,099,423...15,396,915
JBrowse link
G Shroom4 shroom family member 4 colocalizes_with
is_active_in
ISO
IBA
(MGI:3690292|PMID:16684770)
PMID:21873635
RGD PMID:16684770 PMID:21873635 MGI:3690292, RGD:13792537 NCBI chr  X:15,869,065...16,076,850
Ensembl chr  X:15,869,065...16,076,869
JBrowse link
G Slc2a1 solute carrier family 2 member 1 located_in ISS
ISO
GO_REF:0000024
(PMID:18347014)
UniProt
RGD
PMID:18347014 GO_REF:0000024 NCBI chr 5:132,717,196...132,745,416
Ensembl chr 5:132,717,196...132,745,416
JBrowse link
G Spta1 spectrin, alpha, erythrocytic 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:86,203,504...86,279,371
Ensembl chr13:86,203,504...86,279,371
JBrowse link
G Sptan1 spectrin, alpha, non-erythrocytic 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:13,241,164...13,306,047
Ensembl chr 3:13,241,217...13,306,046
JBrowse link
G Sptb spectrin, beta, erythrocytic is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:95,310,342...95,437,221
Ensembl chr 6:95,310,326...95,437,118
JBrowse link
G Sptbn1 spectrin, beta, non-erythrocytic 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:103,842,684...104,008,507
Ensembl chr14:103,842,684...104,008,507
JBrowse link
G Sptbn2 spectrin, beta, non-erythrocytic 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,002,970...202,045,343
Ensembl chr 1:202,002,970...202,044,283
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:82,650,750...82,738,345
Ensembl chr 1:82,650,751...82,737,228
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 located_in IDA PMID:20657843 BHF-UCL PMID:20657843 RGD:8553293 NCBI chr12:41,938,533...41,977,517
Ensembl chr12:41,938,560...41,977,517
JBrowse link
G Utrn utrophin is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10760950 PMID:21873635 RGD:1580541, RGD:13792537 NCBI chr 1:6,720,854...7,224,313
Ensembl chr 1:6,722,594...7,224,313
JBrowse link
G Wdr1 WD repeat domain 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:72,258,032...72,291,768
Ensembl chr14:72,257,956...72,291,766
JBrowse link
cortical microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Numa1 nuclear mitotic apparatus protein 1 located_in ISO (PMID:26765568) RGD PMID:26765568 NCBI chr 1:156,297,907...156,372,855
Ensembl chr 1:156,326,259...156,372,855
JBrowse link
cortical microtubule cytoskeleton term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 located_in ISO (PMID:12837247) RGD PMID:12837247 NCBI chr13:29,493,554...29,715,151
Ensembl chr13:29,493,596...29,715,146
JBrowse link
G Mapre1 microtubule-associated protein, RP/EB family, member 1 located_in ISO (PMID:15631994) RGD PMID:15631994 NCBI chr 3:142,218,846...142,246,990
Ensembl chr 3:142,212,955...142,246,983
JBrowse link
cortical microtubule plus-end term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp2 cytoplasmic linker associated protein 2 located_in ISO (PMID:24520051) RGD PMID:24520051 NCBI chr 8:113,677,345...113,859,957
Ensembl chr 8:113,677,284...113,858,731
JBrowse link
G Pde4dip phosphodiesterase 4D interacting protein colocalizes_with ISO (PMID:29162697) RGD PMID:29162697 NCBI chr 2:185,293,236...185,490,100
Ensembl chr 2:185,293,214...185,468,379
JBrowse link
cuticular plate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calb1 calbindin 1 IDA RGD PMID:16120789 RGD:7175527 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431
JBrowse link
G Calb2 calbindin 2 IDA RGD PMID:16120789 RGD:7175527 NCBI chr19:38,114,435...38,141,438
Ensembl chr19:38,114,424...38,141,438
JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in ISO
ISS
(PMID:26426422)
GO_REF:0000024
RGD
UniProt
PMID:26426422 GO_REF:0000024 NCBI chr 8:54,930,265...54,947,157 JBrowse link
G Fchsd1 FCH and double SH3 domains 1 colocalizes_with ISO (MGI:6233193|PMID:23437151) RGD PMID:23437151 MGI:6233193 NCBI chr18:29,793,899...29,804,533
Ensembl chr18:29,793,899...29,804,466
JBrowse link
G Kncn kinocilin located_in
is_active_in
ISO
IBA
(MGI:3576794|PMID:15855039)
PMID:21873635
RGD PMID:15855039 PMID:21873635 MGI:3576794, RGD:13792537 NCBI chr 5:129,362,483...129,365,964
Ensembl chr 5:129,363,785...129,366,738
JBrowse link
G Myo1e myosin IE IDA RGD PMID:12486594 RGD:1298992 NCBI chr 8:70,887,934...71,080,180
Ensembl chr 8:70,887,870...71,080,169
JBrowse link
G Ocm oncomodulin IDA RGD PMID:16120789 RGD:7175527 NCBI chr12:10,535,619...10,596,705
Ensembl chr12:10,586,897...10,596,707
JBrowse link
G Pvalb parvalbumin IDA RGD PMID:16120789 RGD:7175527 NCBI chr 7:109,772,939...109,787,954
Ensembl chr 7:109,772,593...109,784,561
JBrowse link
G Snx9 sorting nexin 9 colocalizes_with ISO (MGI:6233193|PMID:23437151) RGD PMID:23437151 MGI:6233193 NCBI chr 1:46,424,897...46,510,096
Ensembl chr 1:46,423,553...46,509,036
JBrowse link
G Spta1 spectrin, alpha, erythrocytic 1 located_in ISO (MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:4430014 NCBI chr13:86,203,504...86,279,371
Ensembl chr13:86,203,504...86,279,371
JBrowse link
G Sptan1 spectrin, alpha, non-erythrocytic 1 located_in ISO (MGI:3821785|PMID:18796539) RGD PMID:18796539 MGI:3821785 NCBI chr 3:13,241,164...13,306,047
Ensembl chr 3:13,241,217...13,306,046
JBrowse link
G Sptbn1 spectrin, beta, non-erythrocytic 1 located_in ISO (MGI:3821785|PMID:18796539) RGD PMID:18796539 MGI:3821785 NCBI chr14:103,842,684...104,008,507
Ensembl chr14:103,842,684...104,008,507
JBrowse link
G Triobp TRIO and F-actin binding protein located_in ISO (MGI:4881391|PMID:20510926) RGD PMID:20510926 MGI:4881391 NCBI chr 7:110,505,916...110,569,301
Ensembl chr 7:110,506,248...110,562,474
JBrowse link
cytoskeleton of presynaptic active zone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsn bassoon (presynaptic cytomatrix protein) located_in
is_active_in
IDA
IBA
PMID:9679147
PMID:21873635
RGD
SynGO-UCL
GO_Central
PMID:11596050 PMID:9679147 PMID:21873635 RGD:9850129, RGD:69780, RGD:13792537 NCBI chr 8:108,784,849...108,875,819
Ensembl chr 8:108,788,542...108,875,819
JBrowse link
G Erc1 ELKS/RAB6-interacting/CAST family member 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:152,763,664...153,055,706
Ensembl chr 4:152,767,419...153,055,639
JBrowse link
G Erc2 ELKS/RAB6-interacting/CAST family member 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:2,812,712...3,673,624
Ensembl chr16:2,848,620...3,670,776
JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11596050 PMID:21873635 RGD:9850129, RGD:13792537 NCBI chr 4:19,691,439...20,050,015
Ensembl chr 4:19,695,315...20,049,885
JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:24,696,959...25,196,368
Ensembl chr 9:24,698,854...25,196,631
JBrowse link
G Rims2 regulating synaptic membrane exocytosis 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,248,104...70,759,134
Ensembl chr 7:70,243,872...70,757,491
JBrowse link
G Rims3 regulating synaptic membrane exocytosis 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:134,429,092...134,468,935
Ensembl chr 5:134,435,829...134,640,489
JBrowse link
spectrin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkcb protein kinase C, beta part_of IEA
ISO
GO_REF:0000107
(MGI:1346761|PMID:10534118)
Ensembl
RGD
PMID:10534118 GO_REF:0000107 MGI:1346761 NCBI chr 1:176,832,173...177,163,539
Ensembl chr 1:176,832,226...177,163,536
JBrowse link
G Spta1 spectrin, alpha, erythrocytic 1 part_of ISO MGI:1856180|MGI:1856181|MGI:1856377|MGI:1858128 (MGI:55971|PMID:6234993) RGD PMID:6234993 MGI:55971 NCBI chr13:86,203,504...86,279,371
Ensembl chr13:86,203,504...86,279,371
JBrowse link
G Sptan1 spectrin, alpha, non-erythrocytic 1 TAS RGD PMID:2753883 RGD:631897 NCBI chr 3:13,241,164...13,306,047
Ensembl chr 3:13,241,217...13,306,046
JBrowse link
G Sptb spectrin, beta, erythrocytic part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:95,310,342...95,437,221
Ensembl chr 6:95,310,326...95,437,118
JBrowse link
G Sptbn1 spectrin, beta, non-erythrocytic 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:103,842,684...104,008,507
Ensembl chr14:103,842,684...104,008,507
JBrowse link
G Sptbn2 spectrin, beta, non-erythrocytic 2 part_of ISO
IEA
TAS
(PMID:9826670)
GO_REF:0000002
PMID:9704016
RGD
InterPro
PMID:9826670 PMID:9704016 GO_REF:0000002, RGD:70020 NCBI chr 1:202,002,970...202,045,343
Ensembl chr 1:202,002,970...202,044,283
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 part_of ISO (PMID:11086001) RGD PMID:11086001 NCBI chr 1:82,650,750...82,738,345
Ensembl chr 1:82,650,751...82,737,228
JBrowse link
terminal web term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn1 actinin, alpha 1 located_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 6:98,998,553...99,093,334
Ensembl chr 6:98,998,556...99,093,251
JBrowse link
G Cobl cordon-bleu WH2 repeat protein located_in
is_active_in
ISO
IBA
(MGI:5621262|PMID:22114352)
PMID:21873635
RGD PMID:22114352 PMID:21873635 MGI:5621262, RGD:13792537 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800
JBrowse link
G Hfe homeostatic iron regulator IDA RGD PMID:16208485 RGD:1582698 NCBI chr17:41,413,451...41,421,502
Ensembl chr17:41,413,451...41,421,502
JBrowse link
G Krt19 keratin 19 located_in ISO (MGI:5609425|PMID:19321664) RGD PMID:19321664 MGI:5609425 NCBI chr10:85,075,835...85,080,552
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Pls1 plastin 1 located_in ISO (MGI:5609425|PMID:19321664) RGD PMID:19321664 MGI:5609425 NCBI chr 8:96,316,703...96,426,592
Ensembl chr 8:96,317,849...96,385,195
JBrowse link
G Vcl vinculin located_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr15:3,265,776...3,355,586
Ensembl chr15:3,265,815...3,355,606
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19309
    cellular anatomical entity 19051
      cytoplasm 11299
        cell cortex 340
          cortical cytoskeleton 124
            cortical actin cytoskeleton + 90
            cortical microtubule cytoskeleton + 5
            cytoskeleton of presynaptic active zone + 7
            eisosome filament 0
Path 2
Term Annotations click to browse term
  cellular_component 19309
    cellular anatomical entity 19051
      organelle 12937
        non-membrane-bounded organelle 4829
          intracellular non-membrane-bounded organelle 4828
            cytoskeleton 2204
              cortical cytoskeleton 124
                cortical actin cytoskeleton + 90
                cortical microtubule cytoskeleton + 5
                cytoskeleton of presynaptic active zone + 7
                eisosome filament 0
paths to the root