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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of nucleotide biosynthetic process
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Accession:GO:0030808 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides.
Synonyms:exact_synonym: regulation of nucleotide anabolism;   regulation of nucleotide biosynthesis;   regulation of nucleotide formation;   regulation of nucleotide synthesis


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negative regulation of ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 IMP RGD PMID:21325440 RGD:9685453 NCBI chr 1:249,374,810...249,502,310
Ensembl chr 1:239,425,430...239,552,317 		JBrowse link
G Mir675 microRNA 675 acts_upstream_of ISO (PMID:31574452) RGD PMID:31574452 NCBI chr 1:207,161,752...207,161,835
Ensembl chr 1:197,732,275...197,732,358 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO
IEA		 (PMID:24289924)
GO_REF:0000107		 RGD
Ensembl		 PMID:24289924 GO_REF:0000107 NCBI chr13:94,839,484...94,871,295
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Pid1 phosphotyrosine interaction domain containing 1 involved_in ISO
IEA		 (PMID:20165904)
GO_REF:0000107		 RGD
Ensembl		 PMID:20165904 GO_REF:0000107 NCBI chr 9:92,732,471...92,951,168
Ensembl chr 9:85,284,335...85,503,044 		JBrowse link
negative regulation of guanylate cyclase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hpca hippocalcin IDA RGD PMID:15336960 RGD:9686438 NCBI chr 5:146,739,978...146,750,961
Ensembl chr 5:141,455,613...141,463,841 		JBrowse link
G Rd3 RD3 regulator of GUCY2D involved_in ISO (PMID:21928830), (PMID:30559291)
(PMID:27471269)		 RGD PMID:21928830 PMID:27471269 PMID:30559291 NCBI chr13:106,060,657...106,097,063
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
negative regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:150,022,960...150,026,677
Ensembl chr 5:144,738,950...144,742,668 		JBrowse link
positive regulation of ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 IMP RGD PMID:31172217 RGD:329403053 NCBI chr13:80,280,595...80,366,939
Ensembl chr13:77,768,468...77,833,951 		JBrowse link
G Bcl2l1 Bcl2-like 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:161,713,777...161,764,844
Ensembl chr 3:141,253,523...141,303,479
Ensembl chr 1:141,253,523...141,303,479 		JBrowse link
G Eno1 enolase 1 involved_in ISO UniProtKB:Q01986 (PMID:15459207) RGD PMID:15459207 NCBI chr 5:166,002,867...166,014,252
Ensembl chr 5:160,719,951...160,731,336
Ensembl chr 3:160,719,951...160,731,336 		JBrowse link
G Hnf1a HNF1 homeobox A IMP RGD PMID:20841353 RGD:150540305 NCBI chr12:47,299,171...47,333,457
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Il4 interleukin 4 involved_in ISO (PMID:29061364) RGD PMID:29061364 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in IMP
IGI		 PMID:15459207 CAFA PMID:15459207 PMID:15459207 RGD:12793039, RGD:12793039 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IMP RGD PMID:22629444 RGD:7240532 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 IMP RGD PMID:26888427 RGD:11040458 NCBI chr 1:161,122,370...161,129,413
Ensembl chr 1:151,711,901...151,718,189 		JBrowse link
G Pid1 phosphotyrosine interaction domain containing 1 involved_in ISO (PMID:21080215) RGD PMID:21080215 NCBI chr 9:92,732,471...92,951,168
Ensembl chr 9:85,284,335...85,503,044 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of ISO
IEA		 (PMID:31574452)
GO_REF:0000107		 RGD
Ensembl		 PMID:31574452 GO_REF:0000107 NCBI chr 7:118,712,261...118,780,723
Ensembl chr 7:116,832,756...116,895,346 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase IMP RGD PMID:24096089 RGD:10413842 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:24747689) RGD PMID:24747689 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Slc25a12 solute carrier family 25 member 12 IMP RGD PMID:19764902 RGD:13628741 NCBI chr 3:76,504,868...76,599,536
Ensembl chr 3:56,097,269...56,192,100 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 IMP RGD PMID:23590160 RGD:8694322 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase IMP RGD PMID:20348225 RGD:13432160 NCBI chr  X:157,216,826...157,230,524
Ensembl chr  X:152,065,609...152,074,001 		JBrowse link
G Tmsb4x thymosin beta 4, X-linked involved_in ISO (PMID:21106936) RGD PMID:21106936 NCBI chr  X:30,761,611...30,763,612
Ensembl chr  X:27,128,610...27,146,667
Ensembl chr10:27,128,610...27,146,667 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:28802038) RGD PMID:28802038 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
G Vcp valosin-containing protein involved_in ISO
IEA		 (PMID:23498975)
GO_REF:0000107		 RGD
Ensembl		 PMID:23498975 GO_REF:0000107 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
positive regulation of guanylate cyclase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora2b adenosine A2B receptor acts_upstream_of_or_within ISO MGI:3773754 (PMID:18340377) RGD PMID:18340377 NCBI chr10:47,439,712...47,456,092
Ensembl chr10:46,940,384...46,956,772 		JBrowse link
G Guca1a guanylate cyclase activator 1A IDA RGD PMID:12545196 RGD:1599357 NCBI chr 9:21,080,782...21,096,221
Ensembl chr 9:13,588,525...13,598,565 		JBrowse link
regulation of ATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sphk2 sphingosine kinase 2 involved_in ISO
IEA		 (PMID:25637806)
GO_REF:0000107		 RGD
Ensembl		 PMID:25637806 GO_REF:0000107 NCBI chr 1:105,317,332...105,324,985
Ensembl chr 1:96,180,887...96,188,391 		JBrowse link
regulation of guanylate cyclase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guca1a guanylate cyclase activator 1A acts_upstream_of_or_within ISO MGI:1194489 (PMID:15336959) RGD PMID:15336959 NCBI chr 9:21,080,782...21,096,221
Ensembl chr 9:13,588,525...13,598,565 		JBrowse link
G Guca1b guanylate cyclase activator 1B acts_upstream_of_or_within ISO MGI:102770 (PMID:15336959) RGD PMID:15336959 NCBI chr 9:21,097,274...21,105,107
Ensembl chr 9:13,599,619...13,607,455 		JBrowse link
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antkmt adenine nucleotide translocase lysine methyltransferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,316,797...15,320,950
Ensembl chr10:14,812,269...14,814,193 		JBrowse link
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase involved_in ISO
IEA
IBA
ISS		 (PMID:30530489)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:30530489 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:84,313,991...84,329,195
Ensembl chr 2:82,603,009...82,618,308 		JBrowse link
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 involved_in ISO
IEA		 (PMID:30318146)
GO_REF:0000107		 RGD
Ensembl		 PMID:30318146 GO_REF:0000107 NCBI chr12:27,264,861...27,265,940
Ensembl chr12:21,626,450...21,629,408 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    regulation of biological process 13403
      regulation of cellular process 13038
        regulation of metabolic process 6791
          regulation of biosynthetic process 5581
            regulation of nucleotide biosynthetic process 31
              negative regulation of nucleotide biosynthetic process + 7
              positive regulation of nucleotide biosynthetic process + 20
              regulation of purine nucleotide biosynthetic process + 31
              regulation of pyrimidine nucleotide biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        primary metabolic process 10763
          nucleobase-containing compound metabolic process 5900
            nucleobase-containing small molecule metabolic process 733
              nucleoside phosphate metabolic process 699
                nucleotide metabolic process 540
                  nucleotide biosynthetic process 224
                    regulation of nucleotide biosynthetic process 31
                      negative regulation of nucleotide biosynthetic process + 7
                      positive regulation of nucleotide biosynthetic process + 20
                      regulation of purine nucleotide biosynthetic process + 31
                      regulation of pyrimidine nucleotide biosynthetic process + 0
paths to the root