Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of nucleotide biosynthetic process
go back to main search page
Accession:GO:0030808 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides.
Synonyms:exact_synonym: regulation of nucleotide anabolism;   regulation of nucleotide biosynthesis;   regulation of nucleotide formation;   regulation of nucleotide synthesis


show annotations for term's descendants           Sort by:
 
negative regulation of ATP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 IMP RGD PMID:21325440 RGD:9685453 NCBI chr 1:259,692,020...259,818,922
Ensembl chr 1:259,739,955...259,819,494
JBrowse link
G Flcn folliculin ISO
ISS
(MGI:MGI:5463828|PMID:23150719)
GO_REF:0000024
RGD
UniProt
PMID:23150719 GO_REF:0000024, MGI:MGI:5463828 NCBI chr10:46,153,185...46,172,331
Ensembl chr10:46,153,188...46,172,309
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 ISO (PMID:24289924) RGD PMID:24289924 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link
G Pid1 phosphotyrosine interaction domain containing 1 ISO (PMID:20165904) RGD PMID:20165904 NCBI chr 9:91,667,748...91,683,468
Ensembl chr 9:91,665,986...91,882,927
JBrowse link
negative regulation of guanylate cyclase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hpca hippocalcin IDA RGD PMID:15336960 RGD:9686438 NCBI chr 5:147,295,124...147,305,757
Ensembl chr 5:147,294,820...147,303,346
JBrowse link
G Pdzd3 PDZ domain containing 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:48,577,905...48,582,353
Ensembl chr 8:48,577,952...48,582,353
JBrowse link
G Rd3 retinal degeneration 3, GUCY2D regulator ISO (PMID:21928830), (PMID:30559291)
(MGI:MGI:5810226|PMID:27471269)
RGD PMID:21928830, PMID:27471269, PMID:30559291 MGI:MGI:5810226 NCBI chr13:110,739,645...110,749,167
Ensembl chr13:110,743,098...110,748,365
JBrowse link
positive regulation of ATP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 Bcl2-like 1 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:148,259,594...148,314,191
Ensembl chr 3:148,259,596...148,313,810
JBrowse link
G Eno1 enolase 1 ISO UniProtKB:Q01986 (PMID:15459207) RGD PMID:15459207 NCBI chr 5:167,288,223...167,299,610
Ensembl chr 5:167,288,223...167,299,609
JBrowse link
G Il4 interleukin 4 ISO (MGI:MGI:6304699|PMID:29061364) RGD PMID:29061364 MGI:MGI:6304699 NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IGI
IMP
PMID:15459207 CAFA PMID:15459207, PMID:15459207 RGD:12793039, RGD:12793039 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Mt-co2 mitochondrially encoded cytochrome c oxidase II IMP RGD PMID:19306371 RGD:13506652 NCBI chr MT:7,006...7,689
Ensembl chr MT:7,006...7,689
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IMP RGD PMID:22629444 RGD:7240532 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 IMP RGD PMID:26888427 RGD:11040458 NCBI chr 1:162,369,801...162,376,024
Ensembl chr 1:162,369,801...162,376,023
JBrowse link
G Pid1 phosphotyrosine interaction domain containing 1 ISO (MGI:MGI:5306739|PMID:21080215) RGD PMID:21080215 MGI:MGI:5306739 NCBI chr 9:91,667,748...91,683,468
Ensembl chr 9:91,665,986...91,882,927
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha ISO (PMID:31574452) RGD PMID:31574452 NCBI chr 7:126,618,872...126,687,282
Ensembl chr 7:126,619,196...126,681,752
JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO
ISS
(MGI:MGI:5463828|PMID:23150719)
GO_REF:0000024
RGD
UniProt
PMID:23150719 GO_REF:0000024, MGI:MGI:5463828 NCBI chr14:63,095,291...63,190,688
Ensembl chr14:63,095,720...63,187,009
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase IMP RGD PMID:24096089 RGD:10413842 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:24747689) RGD PMID:24747689 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Slc25a12 solute carrier family 25 member 12 IMP RGD PMID:19764902 RGD:13628741 NCBI chr 3:57,881,951...57,998,214
Ensembl chr 3:57,882,370...57,957,346
JBrowse link
G Stat3 signal transducer and activator of transcription 3 IMP RGD PMID:23590160 RGD:8694322 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Taz tafazzin IMP RGD PMID:20348225 RGD:13432160 NCBI chr  X:156,421,006...156,429,461
Ensembl chr  X:156,421,009...156,428,593
JBrowse link
G Tmsb4x thymosin beta 4, X-linked ISO (PMID:21106936) RGD PMID:21106936 NCBI chr  X:28,593,405...28,617,267
Ensembl chr  X:28,593,405...28,595,395
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 ISO (MGI:MGI:5906931|PMID:28802038) RGD PMID:28802038 MGI:MGI:5906931 NCBI chr 9:14,611,541...14,618,076
Ensembl chr 9:14,611,561...14,618,013
JBrowse link
G Vcp valosin-containing protein ISO (PMID:23498975) RGD PMID:23498975 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
positive regulation of guanylate cyclase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora2b adenosine A2B receptor ISO
IEA
MGI:MGI:3773754 (MGI:MGI:3794903|PMID:18340377)
GO_REF:0000107
RGD
Ensembl
PMID:18340377 GO_REF:0000107, MGI:MGI:3794903 NCBI chr10:48,569,563...48,586,366
Ensembl chr10:48,569,555...48,586,365
JBrowse link
G Guca1a guanylate cyclase activator 1A IDA RGD PMID:12545196 RGD:1599357 NCBI chr 9:15,609,804...15,620,030
Ensembl chr 9:15,609,804...15,620,029
JBrowse link
G Guca1b guanylate cyclase activator 1B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:15,621,083...15,629,017
Ensembl chr 9:15,621,083...15,629,017
JBrowse link
G Guca2a guanylate cyclase activator 2A IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:138,685,634...138,687,476
Ensembl chr 5:138,685,624...138,687,816
JBrowse link
G Guca2b guanylate cyclase activator 2B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:138,695,591...138,697,641
Ensembl chr 5:138,695,591...138,697,641
JBrowse link
G Nos1 nitric oxide synthase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:44,214,949...44,405,530
Ensembl chr12:44,213,943...44,520,341
JBrowse link
G Nos2 nitric oxide synthase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
JBrowse link
G Nos3 nitric oxide synthase 3 ISO
IBA
IEA
(PMID:17502619)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:17502619, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdk1 pyruvate dehydrogenase kinase 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5487511|PMID:22195962)
Ensembl
RGD
PMID:22195962 GO_REF:0000107, MGI:MGI:5487511 NCBI chr 3:58,530,870...58,561,494
Ensembl chr 3:58,530,870...58,558,027
JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5428826|PMID:22360721)
Ensembl
UniProt
RGD
PMID:22360721 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5428826 NCBI chr10:82,838,270...82,852,758
Ensembl chr10:82,839,153...82,852,660
JBrowse link
G Pdk3 pyruvate dehydrogenase kinase 3 ISO (PMID:22865452) RGD PMID:22865452 NCBI chr  X:62,836,131...62,904,114
Ensembl chr  X:62,836,131...62,903,554
JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3692363|PMID:16606348)
(PMID:21852536)
Ensembl
UniProt
RGD
PMID:16606348, PMID:21852536 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3692363 NCBI chr 4:30,546,772...30,556,774
Ensembl chr 4:30,546,664...30,556,814
JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha ISO MGI:MGI:2389489 (MGI:MGI:3628986|PMID:16636270), (MGI:MGI:3629421|PMID:16734431) RGD PMID:16636270, PMID:16734431 MGI:MGI:3628986, MGI:MGI:3629421 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285
JBrowse link
regulation of ATP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 ISO
ISS
(PMID:24767988)
GO_REF:0000024
RGD
UniProt
PMID:24767988 GO_REF:0000024 NCBI chr 5:120,250,318...120,309,153
Ensembl chr 5:120,250,616...120,305,897
JBrowse link
G Sphk2 sphingosine kinase 2 ISO (MGI:MGI:5641585|PMID:25637806) RGD PMID:25637806 MGI:MGI:5641585 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
regulation of guanylate cyclase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guca1a guanylate cyclase activator 1A ISO MGI:MGI:1194489 (MGI:MGI:3052899|PMID:15336959) RGD PMID:15336959 MGI:MGI:3052899 NCBI chr 9:15,609,804...15,620,030
Ensembl chr 9:15,609,804...15,620,029
JBrowse link
G Guca1b guanylate cyclase activator 1B ISO MGI:MGI:102770 (MGI:MGI:3052899|PMID:15336959) RGD PMID:15336959 MGI:MGI:3052899 NCBI chr 9:15,621,083...15,629,017
Ensembl chr 9:15,621,083...15,629,017
JBrowse link
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antkmt adenine nucleotide translocase lysine methyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:15,160,037...15,161,895
Ensembl chr10:15,159,803...15,161,938
JBrowse link
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:MGI:6277238|PMID:30530489)
(PMID:30530489)
UniProt
RGD
PMID:30530489, PMID:21873635 GO_REF:0000024, MGI:MGI:6277238, RGD:13792537 NCBI chr 2:84,678,892...84,694,152
Ensembl chr 2:84,678,948...84,693,988
JBrowse link
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 ISO (MGI:MGI:6245118|PMID:30318146) RGD PMID:30318146 MGI:MGI:6245118 NCBI chr12:24,668,398...24,669,464
Ensembl chr12:24,668,398...24,669,464
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      cellular metabolic process 11085
        cellular biosynthetic process 6060
          regulation of cellular biosynthetic process 4032
            regulation of nucleotide biosynthetic process 42
              negative regulation of nucleotide biosynthetic process + 7
              positive regulation of nucleotide biosynthetic process + 26
              regulation of 'de novo' NAD biosynthetic process from tryptophan + 0
              regulation of purine nucleotide biosynthetic process + 42
              regulation of pyrimidine nucleotide biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleobase-containing small molecule metabolic process 591
              nucleoside phosphate metabolic process 511
                nucleotide metabolic process 504
                  regulation of nucleotide metabolic process 88
                    regulation of nucleotide biosynthetic process 42
                      negative regulation of nucleotide biosynthetic process + 7
                      positive regulation of nucleotide biosynthetic process + 26
                      regulation of 'de novo' NAD biosynthetic process from tryptophan + 0
                      regulation of purine nucleotide biosynthetic process + 42
                      regulation of pyrimidine nucleotide biosynthetic process + 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.