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ONTOLOGY REPORT - ANNOTATIONS


Term:endocytic vesicle membrane
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Accession:GO:0030666 term browser browse the term
Definition:The lipid bilayer surrounding an endocytic vesicle.



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endocytic vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cubn cubilin IDA RGD PMID:15578272 RGD:2317835 NCBI chr17:76,385,046...76,593,133
Ensembl chr17:76,385,060...76,593,231
JBrowse link
G Dync1li1 dynein cytoplasmic 1 light intermediate chain 1 located_in ISO
IEA
ISS
(PMID:20026645)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20026645 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:114,376,649...114,410,297
Ensembl chr 8:114,376,662...114,410,934
JBrowse link
G Rab11a RAB11a, member RAS oncogene family located_in ISO
ISS
(PMID:20026645)
GO_REF:0000024
RGD
UniProt
PMID:20026645 GO_REF:0000024 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525
JBrowse link
G Rab11fip3 RAB11 family interacting protein 3 located_in ISO (PMID:20026645) RGD PMID:20026645 NCBI chr10:15,002,650...15,086,382
Ensembl chr10:15,002,926...15,118,479
JBrowse link
G Scarb2 scavenger receptor class B, member 2 located_in IEA
ISO
GO_REF:0000107
(PMID:29199275)
Ensembl
RGD
PMID:29199275 GO_REF:0000107 NCBI chr14:15,558,271...15,609,813
Ensembl chr14:15,558,236...15,609,813
JBrowse link
AP-2 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 part_of ISO
IBA
(PMID:23676497)
GO_REF:0000033
RGD
GO_Central
PMID:23676497 GO_REF:0000033 NCBI chr 1:95,384,306...95,414,170
Ensembl chr 1:95,384,309...95,414,147
JBrowse link
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 part_of ISO
IBA
IEA
IMP
(PMID:23676497)
GO_REF:0000033
GO_REF:0000117
PMID:12086608
RGD
GO_Central
UniProt
PMID:23676497 PMID:12086608 GO_REF:0000033 GO_REF:0000117, RGD:12793054 NCBI chr 1:196,652,315...196,725,609
Ensembl chr 1:196,652,337...196,725,603
JBrowse link
G Ap2b1 adaptor related protein complex 2 subunit beta 1 part_of ISO (PMID:12086608), (PMID:23676497)
(PMID:23676497)
RGD PMID:12086608 PMID:23676497 NCBI chr10:68,099,397...68,205,023
Ensembl chr10:68,099,547...68,205,013
JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 part_of IDA
ISO
IBA
PMID:12086608
(PMID:23676497)
GO_REF:0000033
RGD
GO_Central
PMID:23676497 PMID:12086608 GO_REF:0000033, RGD:12793054 NCBI chr11:80,355,307...80,364,218
Ensembl chr11:80,328,041...80,364,140
JBrowse link
G Ap2s1 adaptor related protein complex 2 subunit sigma 1 part_of IDA
ISO
IEA
(PMID:12086608)
GO_REF:0000107
GO_REF:0000002
PMID:2040623
RGD
Ensembl
InterPro
PMID:12086608 PMID:7593184 PMID:2040623 GO_REF:0000002 GO_REF:0000107, RGD:2306270, RGD:727584 NCBI chr 1:77,417,496...77,428,903
Ensembl chr 1:77,417,477...77,428,905
JBrowse link
G Btbd8 BTB domain containing 8 located_in IDA PMID:29262337 UniProt PMID:29262337 RGD:13601995 NCBI chr14:2,265,187...2,338,426
Ensembl chr14:2,266,454...2,334,393
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of ISO (PMID:17626015) RGD PMID:17626015 NCBI chr 5:124,045,865...124,146,221
Ensembl chr 5:124,045,926...124,146,221
JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 part_of ISS
ISO
IEA
PMID:17626015
(PMID:17626015)
GO_REF:0000107
RGD
Ensembl
PMID:17626015 PMID:17626015 GO_REF:0000107, RGD:8554282 NCBI chr 5:117,536,752...117,734,593
Ensembl chr 5:117,537,746...117,734,575
JBrowse link
G Slc18a3 solute carrier family 18 member A3 part_of IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:14724281 GO_REF:0000033, RGD:2317430 NCBI chr16:7,713,630...7,716,491 JBrowse link
G Ston1 stonin 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:5,843,186...5,892,557
Ensembl chr 6:5,843,185...5,892,449
JBrowse link
G Ston2 stonin 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:110,567,485...110,676,376
Ensembl chr 6:110,567,485...110,676,376
JBrowse link
G Tbc1d5 TBC1 domain family, member 5 located_in ISO (PMID:24603492) RGD PMID:24603492 NCBI chr 9:3,503,328...4,017,131
Ensembl chr 9:3,513,623...4,016,913
JBrowse link
clathrin coat of endocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epn2 epsin 2 IDA RGD PMID:10567358 RGD:708327 NCBI chr10:46,197,785...46,259,673
Ensembl chr10:46,197,785...46,259,642
JBrowse link
clathrin-coated endocytic vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clta clathrin, light chain A located_in TAS Reactome:R-RNO-177478
Reactome:R-RNO-182041
Reactome Reactome:R-RNO-177478 Reactome:R-RNO-182041 NCBI chr 5:58,244,253...58,263,480
Ensembl chr 5:58,245,442...58,263,472
JBrowse link
G Cltc clathrin heavy chain located_in TAS Reactome:R-RNO-177478
Reactome:R-RNO-182041
Reactome Reactome:R-RNO-177478 Reactome:R-RNO-182041 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737
JBrowse link
G Tyrp1 tyrosinase-related protein 1 located_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
early phagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 located_in ISO (PMID:27219021) RGD PMID:27219021 NCBI chr 7:20,135,248...20,184,757
Ensembl chr 7:20,135,375...20,184,754
JBrowse link
G Mtmr4 myotubularin related protein 4 is_active_in ISO (PMID:31543504) RGD PMID:31543504 NCBI chr10:72,393,411...72,416,342
Ensembl chr10:72,392,551...72,416,342
JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25568335)
UniProt
Ensembl
RGD
PMID:25568335 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:105,246,712...105,382,973
Ensembl chr 9:105,246,709...105,381,253
JBrowse link
phagocytic vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07044383.1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr20:3,403,777...3,436,874 JBrowse link
G AABR07044397.1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr20:2,496,605...2,497,428 JBrowse link
G Anxa3 annexin A3 located_in ISO (PMID:7526843) RGD PMID:7526843 NCBI chr14:12,727,708...12,781,717
Ensembl chr14:12,719,795...12,781,617
JBrowse link
G Clec4e C-type lectin domain family 4, member E located_in
is_active_in
IEA
ISO
ISS
GO_REF:0000107
(PMID:18490740)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18490740 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:156,606,927...156,612,911
Ensembl chr 4:156,607,614...156,612,767
JBrowse link
G Coro1a coronin 1A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 located_in ISO (PMID:10485905) RGD PMID:10485905 NCBI chr 1:185,617,469...185,696,476
Ensembl chr 1:185,617,294...185,696,478
JBrowse link
G Dnm2 dynamin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157
JBrowse link
G ENSRNOG00000064836 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr20:2,606,621...2,618,153 JBrowse link
G ENSRNOG00000069480 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr20:3,310,825...3,421,372 JBrowse link
G Hvcn1 hydrogen voltage-gated channel 1 located_in ISO (PMID:24415791) RGD PMID:24415791 NCBI chr12:34,341,673...34,370,010
Ensembl chr12:34,335,190...34,370,141
JBrowse link
G Inpp5b inositol polyphosphate-5-phosphatase B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:136,996,766...137,061,315
Ensembl chr 5:136,996,686...137,061,315
JBrowse link
G Irgm immunity-related GTPase M located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in IEA
ISO
GO_REF:0000107
MGI:2446573 (PMID:9670047)
Ensembl
RGD
PMID:9670047 GO_REF:0000107 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522
JBrowse link
G Mpeg1 macrophage expressed 1 is_active_in
located_in
ISS
ISO
IEA
GO_REF:0000024
(PMID:37347855)
GO_REF:0000044
UniProt
RGD
PMID:37347855 GO_REF:0000024 GO_REF:0000044 NCBI chr 1:209,452,176...209,456,692
Ensembl chr 1:209,452,133...209,458,855
JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:127,089,508...127,140,362
Ensembl chr  X:127,089,590...127,140,362
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing located_in ISO (PMID:30612035) RGD PMID:30612035 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 located_in
is_active_in
ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:29378918)
GO_REF:0000033
GO_REF:0000044
UniProt
RGD
GO_Central
PMID:29378918 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 NCBI chr15:24,146,854...24,150,739
Ensembl chr15:24,146,856...24,150,702
JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 located_in
is_active_in
ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:29378918)
GO_REF:0000033
GO_REF:0000044
UniProt
RGD
GO_Central
PMID:29378918 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 NCBI chr 5:28,259,821...28,307,225
Ensembl chr 5:28,259,760...28,307,225
JBrowse link
G Rab10 RAB10, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:26,267,081...26,319,739
Ensembl chr 6:26,266,859...26,320,193
JBrowse link
G Rab11b RAB11B, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:14,521,448...14,534,589
Ensembl chr 7:14,521,368...14,534,593
JBrowse link
G Rab11fip1 RAB11 family interacting protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:64,886,902...64,917,491
Ensembl chr16:64,884,676...64,917,491
JBrowse link
G Rab22a RAB22A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:162,459,727...162,506,129
Ensembl chr 3:162,459,726...162,506,137
JBrowse link
G Rab34 RAB34, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:63,083,319...63,087,538
Ensembl chr10:63,083,338...63,087,538
JBrowse link
G Rab43 RAB43, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:120,249,650...120,269,174
Ensembl chr 4:120,249,879...120,269,174
JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:6,483,906...6,512,877
Ensembl chr 9:6,484,469...6,512,873
JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:68,332,360...68,334,470
Ensembl chr14:68,332,558...68,333,205
JBrowse link
G Rab5c RAB5C, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:85,642,553...85,666,142
Ensembl chr10:85,642,809...85,666,103
JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:17,654,027...17,675,385
Ensembl chr16:17,654,034...17,675,678
JBrowse link
G Rab8b RAB8B, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:67,458,921...67,536,466
Ensembl chr 8:67,458,923...67,536,384
JBrowse link
G Rab9a RAB9A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:27,955,552...28,009,870
Ensembl chr  X:27,952,204...28,001,622
JBrowse link
G Rab9b RAB9B, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:100,220,897...100,231,591
Ensembl chr  X:100,220,894...100,231,701
JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 IDA RGD PMID:18832707 RGD:9835043 NCBI chr 3:12,898,349...13,016,234
Ensembl chr 3:12,898,266...13,013,984
JBrowse link
G RT1-A RT1 class I, locus A located_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G RT1-A2 RT1 class Ia, locus A2 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:4,870,939...4,910,183 JBrowse link
G RT1-CE1 RT1 class I, locus1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,555,779...3,559,487
Ensembl chr20:3,555,782...3,559,486
JBrowse link
G RT1-CE10 RT1 class I, locus CE10 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,377,284...3,380,301 JBrowse link
G RT1-CE11 RT1 class I, locus CE11 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,355,393...3,358,520
Ensembl chr20:3,350,937...3,380,362
JBrowse link
G RT1-CE14 RT1 class I, locus CE14 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,296,654...3,300,795
Ensembl chr20:3,297,196...3,305,134
JBrowse link
G RT1-CE16 RT1 class I, locus CE16 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,257,109...3,260,747
Ensembl chr20:3,257,123...3,279,563
JBrowse link
G RT1-CE2 RT1 class I, locus CE2 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,538,452...3,541,841
Ensembl chr20:3,537,809...3,541,790
JBrowse link
G RT1-M1-5 RT1 class I, M1, gene 5 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:1,858,608...1,860,708
Ensembl chr20:1,811,604...1,860,708
JBrowse link
G RT1-M6-2 RT1 class I, locus M6, gene 2 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:1,583,267...1,587,099
Ensembl chr20:1,583,299...1,586,215
JBrowse link
G RT1-O1 RT1 class Ib, locus O1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,655,116...2,657,520
Ensembl chr20:2,655,116...2,657,520
JBrowse link
G RT1-O1l1 RT1 class Ib, locus O1 like 1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,624,073...2,658,023
Ensembl chr20:2,623,953...2,692,081
JBrowse link
G RT1-S2 RT1 class Ib, locus S2 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,650,233...2,651,654
Ensembl chr20:2,649,964...2,652,027
JBrowse link
G RT1-T24-4 RT1 class I, locus T24, gene 4 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,684,515...2,747,878
Ensembl chr20:2,684,515...2,692,511
JBrowse link
G Slc11a1 solute carrier family 11 member 1 located_in
is_active_in
ISO
IBA
IEA
(PMID:12070036)
MGI:2446573 (PMID:11067873), (PMID:9034150), (PMID:9271100)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:9034150 PMID:9271100 PMID:11067873 PMID:12070036 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:75,957,193...75,968,115
Ensembl chr 9:75,957,316...75,968,101
JBrowse link
G Slc15a2 solute carrier family 15 member 2 located_in
is_active_in
IEA
ISO
GO_REF:0000044
(PMID:20406817)
UniProt
RGD
PMID:20406817 GO_REF:0000044 NCBI chr11:64,014,182...64,043,228
Ensembl chr11:64,014,182...64,043,225
JBrowse link
G Slc48a1 solute carrier family 48 member 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:128,915,136...128,923,929
Ensembl chr 7:128,915,195...128,923,024
JBrowse link
G Slc9a9 solute carrier family 9 member A9 located_in ISO (PMID:35716776) RGD PMID:35716776 NCBI chr 8:95,232,889...95,797,262
Ensembl chr 8:95,232,905...95,796,318
JBrowse link
G Syt7 synaptotagmin 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:207,031,359...207,093,787
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 located_in ISO (PMID:19549681) RGD PMID:19549681 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tlr2 toll-like receptor 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:16,728,486...16,764,261
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp9 vesicle-associated membrane protein 9 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:9,644,109...9,681,254
Ensembl chr14:9,644,582...9,681,205
JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp1 lysosomal-associated membrane protein 1 located_in IEA
ISO
GO_REF:0000107
(PMID:23395172)
Ensembl
RGD
PMID:23395172 GO_REF:0000107 NCBI chr16:76,355,982...76,380,700
Ensembl chr16:76,355,984...76,381,883
JBrowse link
G Mpeg1 macrophage expressed 1 is_active_in ISS
ISO
GO_REF:0000024
(PMID:31537793)
UniProt
RGD
PMID:31537793 GO_REF:0000024 NCBI chr 1:209,452,176...209,456,692
Ensembl chr 1:209,452,133...209,458,855
JBrowse link
G Slc48a1 solute carrier family 48 member 1 is_active_in ISO (PMID:23395172) RGD PMID:23395172 NCBI chr 7:128,915,136...128,923,929
Ensembl chr 7:128,915,195...128,923,024
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20827
    cellular anatomical structure 20627
      cytoplasm 11888
        cytoplasmic vesicle 2049
          endocytic vesicle 230
            endocytic vesicle membrane 81
              clathrin-coated endocytic vesicle membrane + 16
              peribacteroid membrane + 0
              phagocytic vesicle membrane + 60
Path 2
Term Annotations click to browse term
  cellular_component 20827
    cellular anatomical structure 20627
      organelle 13970
        membrane-bounded organelle 12557
          intracellular membrane-bounded organelle 12005
            intracellular vesicle 2058
              cytoplasmic vesicle 2049
                cytoplasmic vesicle membrane 896
                  endocytic vesicle membrane 81
                    clathrin-coated endocytic vesicle membrane + 16
                    peribacteroid membrane + 0
                    phagocytic vesicle membrane + 60
paths to the root